Clone Sequence Records
BO06869.3prime Sequence
815 bp (809 high quality bases) assembled on 2005-12-03
> BO06869.3prime
ATGGTCTAGAAAGCTTGCCTTGATCGTGTCCAGCGATACATGTTCGGATG
TTTTCTCGTCGTGGGCCTTGAAAAGCTCTGGGTTTTCGTCCTCTGTCAGT
TTTTTGAACGCCTGTTGAATGTTTTCGTCGCGATCGAGTCGCCATTTGTA
CTGCCAGTAGCGAACCTCTTCCATCGAGGTCCCTGATGCTTTCATCAGCA
GCAGCGACGTCACACCAGCCACGCCGCCCAAGAAACCTCCAATGATTCCA
CCTGCCGCCATGCCCCGCAGACCAAGACTCACTTTGTAAAGCGAGCCGGT
GATGGAACCAGCGGCCAAGTATTCGTAGATTGAGGATTTTCCACGGTACA
CCGACATACAAGTGATGATGCCGAAGTAGGATGTGGTAAAAAGTCCCACT
CGCCAGCCCCATTTGAAGCCGCCTTTGGCAAAGTTGACTGTGAATTGATC
TTGCAGCTTTTTCTTGGCATCAAAGTGCGATTTAAATGCTGTGGCCTGGT
TGTTCTCCATGAAATTCATGTAGGCCACGCGCGATTGTGTAACTCCGCCG
TAAATAGCTCCAATAAGGAATCCTAGGAAGCCGGCCTGGTAAACCGAGTT
AAGCTCGGAGGATATGCTGCCAAACTCGTCGATTGTAAACATTTGCTTGA
GGCGCTCCAGTCCTGTTTCCTCTGGTGGTTTACTGGCCAGAAAGGCCTTG
TATGTTTTGTTTTCCTTATCGACTATTTCATCTGCGGCGCCTTCGAATGT
TGGCAGGATGCCTGCGATCAGAAACCGGCGTCCTTTCCACAGAAAATTCA
TGTCGACTGATAACT
BO06869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9852-PA | 786 | 140up-RA | 1..783 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 1200 | CG9852-RB | 73..855 | 801..19 | 3915 | 100 | Minus |
140up-RA | 937 | CG9852-RA | 73..855 | 801..19 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14124508..14124862 | 19..373 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 14125304..14125476 | 629..801 | 865 | 100 | Plus |
3R | 32079331 | 3R | 14125075..14125240 | 463..628 | 830 | 100 | Plus |
3R | 32079331 | 3R | 14124925..14125015 | 374..464 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:47:35 has no hits.
BO06869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:04 Download gff for
BO06869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-PA | 1..786 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:00 Download gff for
BO06869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9852-PA | 1..786 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:52 Download gff for
BO06869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..855 | 19..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:50 Download gff for
BO06869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..855 | 19..801 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:50 Download gff for
BO06869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124508..14124862 | 19..373 | 100 | <- | Plus |
3R | 14124925..14125013 | 374..462 | 100 | <- | Plus |
3R | 14125075..14125240 | 463..628 | 100 | <- | Plus |
3R | 14125304..14125476 | 629..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:52 Download gff for
BO06869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9950230..9950584 | 19..373 | 100 | <- | Plus |
arm_3R | 9950647..9950735 | 374..462 | 100 | <- | Plus |
arm_3R | 9950797..9950962 | 463..628 | 100 | <- | Plus |
arm_3R | 9951026..9951198 | 629..801 | 100 | | Plus |
BO06869.5prime Sequence
815 bp (794 high quality bases) assembled on 2005-12-03
> BO06869.5prime
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGG
CAAGCTTTCTAGACC
BO06869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9852-PA | 786 | 140up-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 1200 | CG9852-RB | 73..855 | 17..799 | 3915 | 100 | Plus |
140up-RA | 937 | CG9852-RA | 73..855 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14124508..14124862 | 799..445 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 14125304..14125476 | 189..17 | 865 | 100 | Minus |
3R | 32079331 | 3R | 14125075..14125240 | 355..190 | 830 | 100 | Minus |
3R | 32079331 | 3R | 14124925..14125015 | 444..354 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:05:38 has no hits.
BO06869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:05 Download gff for
BO06869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:01 Download gff for
BO06869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9852-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:09 Download gff for
BO06869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..855 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:32 Download gff for
BO06869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..855 | 17..799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:32 Download gff for
BO06869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124508..14124862 | 445..799 | 100 | <- | Minus |
3R | 14124925..14125013 | 356..444 | 100 | <- | Minus |
3R | 14125075..14125240 | 190..355 | 100 | <- | Minus |
3R | 14125304..14125476 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:09 Download gff for
BO06869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9950230..9950584 | 445..799 | 100 | <- | Minus |
arm_3R | 9950647..9950735 | 356..444 | 100 | <- | Minus |
arm_3R | 9950797..9950962 | 190..355 | 100 | <- | Minus |
arm_3R | 9951026..9951198 | 17..189 | 100 | | Minus |
BO06869.complete Sequence
817 bp (817 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630572
> BO06869.complete
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGG
CAAGCTTTCTAGACCAT
BO06869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 786 | CG9852-PB | 1..783 | 17..799 | 3915 | 100 | Plus |
140up-RA | 786 | CG9852-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 1200 | CG9852-RB | 73..855 | 17..799 | 3915 | 100 | Plus |
140up-RA | 937 | CG9852-RA | 73..855 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14124508..14124862 | 799..445 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 14125304..14125476 | 189..17 | 865 | 100 | Minus |
3R | 32079331 | 3R | 14125075..14125240 | 355..190 | 830 | 100 | Minus |
3R | 32079331 | 3R | 14124925..14125015 | 444..354 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:35:56 has no hits.
BO06869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:28 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:31 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 55..837 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:15:34 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..855 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:28 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 55..837 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:00 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..855 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:00 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124925..14125013 | 356..444 | 100 | <- | Minus |
3R | 14125075..14125240 | 190..355 | 100 | <- | Minus |
3R | 14125304..14125476 | 17..189 | 100 | | Minus |
3R | 14124505..14124862 | 445..801 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:15:34 Download gff for
BO06869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9950227..9950584 | 445..801 | 99 | <- | Minus |
arm_3R | 9950647..9950735 | 356..444 | 100 | <- | Minus |
arm_3R | 9950797..9950962 | 190..355 | 100 | <- | Minus |
arm_3R | 9951026..9951198 | 17..189 | 100 | | Minus |
BO06869.pep Sequence
Translation from 16 to 817
> BO06869.pep
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIKASFLDH
BO06869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-PB | 261 | CG9852-PB | 1..261 | 1..261 | 1355 | 100 | Plus |
140up-PA | 261 | CG9852-PA | 1..261 | 1..261 | 1355 | 100 | Plus |