Clone BO06869 Report

Search the DGRC for BO06869

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:69
Vector:pDNR-Dual
Associated Gene/Transcript140up-RA
Protein status:BO06869.pep: validated full length
Sequenced Size:817

Clone Sequence Records

BO06869.3prime Sequence

815 bp (809 high quality bases) assembled on 2005-12-03

> BO06869.3prime
ATGGTCTAGAAAGCTTGCCTTGATCGTGTCCAGCGATACATGTTCGGATG
TTTTCTCGTCGTGGGCCTTGAAAAGCTCTGGGTTTTCGTCCTCTGTCAGT
TTTTTGAACGCCTGTTGAATGTTTTCGTCGCGATCGAGTCGCCATTTGTA
CTGCCAGTAGCGAACCTCTTCCATCGAGGTCCCTGATGCTTTCATCAGCA
GCAGCGACGTCACACCAGCCACGCCGCCCAAGAAACCTCCAATGATTCCA
CCTGCCGCCATGCCCCGCAGACCAAGACTCACTTTGTAAAGCGAGCCGGT
GATGGAACCAGCGGCCAAGTATTCGTAGATTGAGGATTTTCCACGGTACA
CCGACATACAAGTGATGATGCCGAAGTAGGATGTGGTAAAAAGTCCCACT
CGCCAGCCCCATTTGAAGCCGCCTTTGGCAAAGTTGACTGTGAATTGATC
TTGCAGCTTTTTCTTGGCATCAAAGTGCGATTTAAATGCTGTGGCCTGGT
TGTTCTCCATGAAATTCATGTAGGCCACGCGCGATTGTGTAACTCCGCCG
TAAATAGCTCCAATAAGGAATCCTAGGAAGCCGGCCTGGTAAACCGAGTT
AAGCTCGGAGGATATGCTGCCAAACTCGTCGATTGTAAACATTTGCTTGA
GGCGCTCCAGTCCTGTTTCCTCTGGTGGTTTACTGGCCAGAAAGGCCTTG
TATGTTTTGTTTTCCTTATCGACTATTTCATCTGCGGCGCCTTCGAATGT
TGGCAGGATGCCTGCGATCAGAAACCGGCGTCCTTTCCACAGAAAATTCA
TGTCGACTGATAACT

BO06869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9852-PA 786 140up-RA 1..783 801..19 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 1200 CG9852-RB 73..855 801..19 3915 100 Minus
140up-RA 937 CG9852-RA 73..855 801..19 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14124508..14124862 19..373 1775 100 Plus
3R 32079331 3R 14125304..14125476 629..801 865 100 Plus
3R 32079331 3R 14125075..14125240 463..628 830 100 Plus
3R 32079331 3R 14124925..14125015 374..464 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:47:35 has no hits.

BO06869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:04 Download gff for BO06869.3prime
Subject Subject Range Query Range Percent Splice Strand
140up-PA 1..786 16..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:00 Download gff for BO06869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9852-PA 1..786 16..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:52 Download gff for BO06869.3prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..855 19..801 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:50 Download gff for BO06869.3prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..855 19..801 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:50 Download gff for BO06869.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14124508..14124862 19..373 100 <- Plus
3R 14124925..14125013 374..462 100 <- Plus
3R 14125075..14125240 463..628 100 <- Plus
3R 14125304..14125476 629..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:52 Download gff for BO06869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9950230..9950584 19..373 100 <- Plus
arm_3R 9950647..9950735 374..462 100 <- Plus
arm_3R 9950797..9950962 463..628 100 <- Plus
arm_3R 9951026..9951198 629..801 100   Plus

BO06869.5prime Sequence

815 bp (794 high quality bases) assembled on 2005-12-03

> BO06869.5prime
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGG
CAAGCTTTCTAGACC

BO06869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9852-PA 786 140up-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 1200 CG9852-RB 73..855 17..799 3915 100 Plus
140up-RA 937 CG9852-RA 73..855 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14124508..14124862 799..445 1775 100 Minus
3R 32079331 3R 14125304..14125476 189..17 865 100 Minus
3R 32079331 3R 14125075..14125240 355..190 830 100 Minus
3R 32079331 3R 14124925..14125015 444..354 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:05:38 has no hits.

BO06869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:05 Download gff for BO06869.5prime
Subject Subject Range Query Range Percent Splice Strand
140up-PA 1..786 17..802 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:01 Download gff for BO06869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9852-PA 1..786 17..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:09 Download gff for BO06869.5prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..855 17..799 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:32 Download gff for BO06869.5prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..855 17..799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:32 Download gff for BO06869.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14124508..14124862 445..799 100 <- Minus
3R 14124925..14125013 356..444 100 <- Minus
3R 14125075..14125240 190..355 100 <- Minus
3R 14125304..14125476 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:09 Download gff for BO06869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9950230..9950584 445..799 100 <- Minus
arm_3R 9950647..9950735 356..444 100 <- Minus
arm_3R 9950797..9950962 190..355 100 <- Minus
arm_3R 9951026..9951198 17..189 100   Minus

BO06869.complete Sequence

817 bp (817 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630572

> BO06869.complete
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGG
CAAGCTTTCTAGACCAT

BO06869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 786 CG9852-PB 1..783 17..799 3915 100 Plus
140up-RA 786 CG9852-PA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 1200 CG9852-RB 73..855 17..799 3915 100 Plus
140up-RA 937 CG9852-RA 73..855 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14124508..14124862 799..445 1775 100 Minus
3R 32079331 3R 14125304..14125476 189..17 865 100 Minus
3R 32079331 3R 14125075..14125240 355..190 830 100 Minus
3R 32079331 3R 14124925..14125015 444..354 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:35:56 has no hits.

BO06869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:28 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 1..786 17..802 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:31 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 55..837 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:15:34 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..855 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:28 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 55..837 17..799 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:00 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..855 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:00 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14124925..14125013 356..444 100 <- Minus
3R 14125075..14125240 190..355 100 <- Minus
3R 14125304..14125476 17..189 100   Minus
3R 14124505..14124862 445..801 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:15:34 Download gff for BO06869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9950227..9950584 445..801 99 <- Minus
arm_3R 9950647..9950735 356..444 100 <- Minus
arm_3R 9950797..9950962 190..355 100 <- Minus
arm_3R 9951026..9951198 17..189 100   Minus

BO06869.pep Sequence

Translation from 16 to 817

> BO06869.pep
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIKASFLDH

BO06869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
140up-PB 261 CG9852-PB 1..261 1..261 1355 100 Plus
140up-PA 261 CG9852-PA 1..261 1..261 1355 100 Plus