Clone BO06871 Report

Search the DGRC for BO06871

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG10973-RB
Protein status:BO06871.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO06871.3prime Sequence

950 bp (885 high quality bases) assembled on 2005-12-03

> BO06871.3prime
ATGGTCTAGAAAGCTTGCATGTGCACTTAAGTTGTCAAAAATATTTCTTG
CATAATTAACCATGTCTTCACACGTTTCCGACTGTTTGTTTTTGGAAATA
ATTTGTTGAAGCTTCGATAGGATTTCCTCTCGTTTTTCCGTAGAGAGTTT
TAACTCCGATTCCCGCGAAAGAGATGAAAGTGCAAAAAGCGTAGTTTCTT
GTTTGATATCAAAGTCATCAACGGGCTTAAGGTTTTCCACTAGCACAGGA
AACACTTCTTCCTTCACAAAATCATCTCTGACAGACTTCTCGATTGAAGT
TAACGATGCAATTAGAAAAGCAGTCTTCACGTAGACATTTGTATTTGTGG
ATTTCAGACAGGGTATCAAGGACCTGATCCCCTTTATGCGCTTAAACTCG
TCGTATCCAGGCTGAAAGTTCCTTATCAGCGATGATATCGCATACAAGGA
GCACCGCACGGTATTCGGATTCGAATGGCTCAAGTTCTTTGCAAGTGCAG
GCAAAAACTTATCGTTTATGAGGGCGTTCTGACAAAATACATTATTCTGG
GCCACTTCAGCGACAGTATTGAGTGCCGATTCTCGCACTTCGCTATCCGA
ATGTGTTATGTAGCGGAGTAGAGTTGCAGTTCCTCCTAGCTTCACCAGCG
TTATGGCATTGTCGATGTCATCGATGTGGCTCCTTATGACATCCAGACTC
TCGATTTGGTCGTCCGTGCTGGATTCTTCGCTGTTCAAGATCACCAAAGC
TGCTTTCAGGGCCGCTGCAGCATCCACTGTCATGGCATTTANGGCATTTG
CCAAAAACTGAGCTCTCTCAGGATCGGGAGTTTCCAACTTTGGGGCTGCT
TCTGGATTTGGATCGTGGTGTTGCACCGTATATTTCAGAACATTCTGCAN
GCTTAGGGCTCCTCTTGGCACGTTTGGATCGGTCATGTCGACTGATAACT

BO06871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-PB 921 CG10973-RB 1..918 936..19 4552 99.7 Minus
CG10973-PA 768 CG10973-RA 1..765 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 1032 CG10973-RB 57..974 936..19 4568 99.8 Minus
CG10984-RD 2285 CG10984-RD 2180..2227 19..66 240 100 Plus
CG10984-RB 2321 CG10984-RB 2216..2263 19..66 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12753676..12754218 276..818 2704 99.8 Plus
3L 28110227 3L 12753404..12753615 66..277 1060 100 Plus
3L 28110227 3L 12754542..12754621 817..896 400 100 Plus
3L 28110227 3L 12753297..12753344 19..66 240 100 Plus
3L 28110227 3L 12754677..12754718 895..936 199 97.6 Plus
Blast to na_te.dros performed on 2015-02-12 07:05:54 has no hits.

BO06871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:08 Download gff for BO06871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 1..921 15..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:07 Download gff for BO06871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 1..921 15..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:13 Download gff for BO06871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..977 15..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:54 Download gff for BO06871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..977 15..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:54 Download gff for BO06871.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12753293..12753344 15..66 96 <- Plus
3L 12753405..12753613 67..275 100 <- Plus
3L 12753676..12754216 276..816 99 <- Plus
3L 12754542..12754619 817..894 100 <- Plus
3L 12754677..12754718 895..936 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:13 Download gff for BO06871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12746393..12746444 15..66 96 <- Plus
arm_3L 12746505..12746713 67..275 100 <- Plus
arm_3L 12747642..12747719 817..894 100 <- Plus
arm_3L 12747777..12747818 895..936 97   Plus
arm_3L 12746776..12747316 276..816 99 <- Plus

BO06871.5prime Sequence

899 bp (816 high quality bases) assembled on 2005-12-03

> BO06871.5prime
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAA
ATTATTTCCAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTA

BO06871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-PB 921 CG10973-RB 1..847 17..863 4235 100 Plus
CG10973-PA 768 CG10973-RA 1..694 170..863 3470 100 Plus
CG10973-PB 921 CG10973-RB 845..884 860..899 200 100 Plus
CG10973-PA 768 CG10973-RA 692..731 860..899 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 1032 CG10973-RB 57..940 17..899 4395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12753676..12754218 677..135 2715 100 Minus
3L 28110227 3L 12753404..12753615 886..676 1010 99.5 Minus
3L 28110227 3L 12754542..12754621 136..57 400 100 Minus
3L 28110227 3L 12754677..12754718 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:47:03 has no hits.

BO06871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:09 Download gff for BO06871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 1..883 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:08 Download gff for BO06871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 1..883 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:56 Download gff for BO06871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..939 17..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:45 Download gff for BO06871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..939 17..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:45 Download gff for BO06871.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12753405..12753613 678..885 99 <- Minus
3L 12753676..12754216 137..677 100 <- Minus
3L 12754542..12754619 59..136 100 <- Minus
3L 12754677..12754718 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:56 Download gff for BO06871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12746505..12746713 678..885 99 <- Minus
arm_3L 12746776..12747316 137..677 100 <- Minus
arm_3L 12747642..12747719 59..136 100 <- Minus
arm_3L 12747777..12747818 17..58 100   Minus

BO06871.complete Sequence

952 bp (952 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630573

> BO06871.complete
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAA
ATTATTTCCAAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTA
TGCAAGAAATATTTTTGACAACTTAAGTGCACATGCAAGCTTTCTAGACC
AT

BO06871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 921 CG10973-PB 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 1032 CG10973-RB 57..974 17..934 4590 100 Plus
CG10984-RD 2285 CG10984-RD 2180..2227 934..887 240 100 Minus
CG10984-RB 2321 CG10984-RB 2216..2263 934..887 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12753676..12754218 677..135 2715 100 Minus
3L 28110227 3L 12753404..12753615 887..676 1060 100 Minus
3L 28110227 3L 12754542..12754621 136..57 400 100 Minus
3L 28110227 3L 12753297..12753344 934..887 240 100 Minus
3L 28110227 3L 12754677..12754718 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:38:16 has no hits.

BO06871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:29 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 1..921 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:33 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 11..931 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:46 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..974 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:29 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 11..931 17..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:01 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..974 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:01 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12753295..12753344 887..936 96 <- Minus
3L 12753405..12753613 678..886 100 <- Minus
3L 12753676..12754216 137..677 100 <- Minus
3L 12754542..12754619 59..136 100 <- Minus
3L 12754677..12754718 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:46 Download gff for BO06871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12746395..12746444 887..936 96 <- Minus
arm_3L 12746505..12746713 678..886 100 <- Minus
arm_3L 12746776..12747316 137..677 100 <- Minus
arm_3L 12747642..12747719 59..136 100 <- Minus
arm_3L 12747777..12747818 17..58 100   Minus

BO06871.pep Sequence

Translation from 16 to 952

> BO06871.pep
MTDPNVPRGALSLQNVLKYTVQHHDPNPEAAPKLETPDPERAQFLANALN
AMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKL
GGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAK
NLSHSNPNTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTN
VYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDDFDIKQETTL
FALSSLSRESELKLSTEKREEILSKLQQIISKNKQSETCEDMVNYARNIF
DNLSAHASFLDH

BO06871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-PB 306 CG10973-PB 1..306 1..306 1530 100 Plus