Clone Sequence Records
BO06871.3prime Sequence
950 bp (885 high quality bases) assembled on 2005-12-03
> BO06871.3prime
ATGGTCTAGAAAGCTTGCATGTGCACTTAAGTTGTCAAAAATATTTCTTG
CATAATTAACCATGTCTTCACACGTTTCCGACTGTTTGTTTTTGGAAATA
ATTTGTTGAAGCTTCGATAGGATTTCCTCTCGTTTTTCCGTAGAGAGTTT
TAACTCCGATTCCCGCGAAAGAGATGAAAGTGCAAAAAGCGTAGTTTCTT
GTTTGATATCAAAGTCATCAACGGGCTTAAGGTTTTCCACTAGCACAGGA
AACACTTCTTCCTTCACAAAATCATCTCTGACAGACTTCTCGATTGAAGT
TAACGATGCAATTAGAAAAGCAGTCTTCACGTAGACATTTGTATTTGTGG
ATTTCAGACAGGGTATCAAGGACCTGATCCCCTTTATGCGCTTAAACTCG
TCGTATCCAGGCTGAAAGTTCCTTATCAGCGATGATATCGCATACAAGGA
GCACCGCACGGTATTCGGATTCGAATGGCTCAAGTTCTTTGCAAGTGCAG
GCAAAAACTTATCGTTTATGAGGGCGTTCTGACAAAATACATTATTCTGG
GCCACTTCAGCGACAGTATTGAGTGCCGATTCTCGCACTTCGCTATCCGA
ATGTGTTATGTAGCGGAGTAGAGTTGCAGTTCCTCCTAGCTTCACCAGCG
TTATGGCATTGTCGATGTCATCGATGTGGCTCCTTATGACATCCAGACTC
TCGATTTGGTCGTCCGTGCTGGATTCTTCGCTGTTCAAGATCACCAAAGC
TGCTTTCAGGGCCGCTGCAGCATCCACTGTCATGGCATTTANGGCATTTG
CCAAAAACTGAGCTCTCTCAGGATCGGGAGTTTCCAACTTTGGGGCTGCT
TCTGGATTTGGATCGTGGTGTTGCACCGTATATTTCAGAACATTCTGCAN
GCTTAGGGCTCCTCTTGGCACGTTTGGATCGGTCATGTCGACTGATAACT
BO06871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-PB | 921 | CG10973-RB | 1..918 | 936..19 | 4552 | 99.7 | Minus |
CG10973-PA | 768 | CG10973-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 1032 | CG10973-RB | 57..974 | 936..19 | 4568 | 99.8 | Minus |
CG10984-RD | 2285 | CG10984-RD | 2180..2227 | 19..66 | 240 | 100 | Plus |
CG10984-RB | 2321 | CG10984-RB | 2216..2263 | 19..66 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12753676..12754218 | 276..818 | 2704 | 99.8 | Plus |
3L | 28110227 | 3L | 12753404..12753615 | 66..277 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 12754542..12754621 | 817..896 | 400 | 100 | Plus |
3L | 28110227 | 3L | 12753297..12753344 | 19..66 | 240 | 100 | Plus |
3L | 28110227 | 3L | 12754677..12754718 | 895..936 | 199 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:05:54 has no hits.
BO06871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:08 Download gff for
BO06871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 1..921 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:07 Download gff for
BO06871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 1..921 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:13 Download gff for
BO06871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..977 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:54 Download gff for
BO06871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..977 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:54 Download gff for
BO06871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12753293..12753344 | 15..66 | 96 | <- | Plus |
3L | 12753405..12753613 | 67..275 | 100 | <- | Plus |
3L | 12753676..12754216 | 276..816 | 99 | <- | Plus |
3L | 12754542..12754619 | 817..894 | 100 | <- | Plus |
3L | 12754677..12754718 | 895..936 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:13 Download gff for
BO06871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12746393..12746444 | 15..66 | 96 | <- | Plus |
arm_3L | 12746505..12746713 | 67..275 | 100 | <- | Plus |
arm_3L | 12747642..12747719 | 817..894 | 100 | <- | Plus |
arm_3L | 12747777..12747818 | 895..936 | 97 | | Plus |
arm_3L | 12746776..12747316 | 276..816 | 99 | <- | Plus |
BO06871.5prime Sequence
899 bp (816 high quality bases) assembled on 2005-12-03
> BO06871.5prime
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAA
ATTATTTCCAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTA
BO06871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-PB | 921 | CG10973-RB | 1..847 | 17..863 | 4235 | 100 | Plus |
CG10973-PA | 768 | CG10973-RA | 1..694 | 170..863 | 3470 | 100 | Plus |
CG10973-PB | 921 | CG10973-RB | 845..884 | 860..899 | 200 | 100 | Plus |
CG10973-PA | 768 | CG10973-RA | 692..731 | 860..899 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 1032 | CG10973-RB | 57..940 | 17..899 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12753676..12754218 | 677..135 | 2715 | 100 | Minus |
3L | 28110227 | 3L | 12753404..12753615 | 886..676 | 1010 | 99.5 | Minus |
3L | 28110227 | 3L | 12754542..12754621 | 136..57 | 400 | 100 | Minus |
3L | 28110227 | 3L | 12754677..12754718 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:47:03 has no hits.
BO06871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:09 Download gff for
BO06871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:08 Download gff for
BO06871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:56 Download gff for
BO06871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..939 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:45 Download gff for
BO06871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..939 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:45 Download gff for
BO06871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12753405..12753613 | 678..885 | 99 | <- | Minus |
3L | 12753676..12754216 | 137..677 | 100 | <- | Minus |
3L | 12754542..12754619 | 59..136 | 100 | <- | Minus |
3L | 12754677..12754718 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:56 Download gff for
BO06871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12746505..12746713 | 678..885 | 99 | <- | Minus |
arm_3L | 12746776..12747316 | 137..677 | 100 | <- | Minus |
arm_3L | 12747642..12747719 | 59..136 | 100 | <- | Minus |
arm_3L | 12747777..12747818 | 17..58 | 100 | | Minus |
BO06871.complete Sequence
952 bp (952 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630573
> BO06871.complete
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAA
ATTATTTCCAAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTA
TGCAAGAAATATTTTTGACAACTTAAGTGCACATGCAAGCTTTCTAGACC
AT
BO06871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 921 | CG10973-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 1032 | CG10973-RB | 57..974 | 17..934 | 4590 | 100 | Plus |
CG10984-RD | 2285 | CG10984-RD | 2180..2227 | 934..887 | 240 | 100 | Minus |
CG10984-RB | 2321 | CG10984-RB | 2216..2263 | 934..887 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12753676..12754218 | 677..135 | 2715 | 100 | Minus |
3L | 28110227 | 3L | 12753404..12753615 | 887..676 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 12754542..12754621 | 136..57 | 400 | 100 | Minus |
3L | 28110227 | 3L | 12753297..12753344 | 934..887 | 240 | 100 | Minus |
3L | 28110227 | 3L | 12754677..12754718 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:16 has no hits.
BO06871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:29 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 1..921 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:33 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 11..931 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:46 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..974 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:29 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 11..931 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:01 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..974 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:01 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12753295..12753344 | 887..936 | 96 | <- | Minus |
3L | 12753405..12753613 | 678..886 | 100 | <- | Minus |
3L | 12753676..12754216 | 137..677 | 100 | <- | Minus |
3L | 12754542..12754619 | 59..136 | 100 | <- | Minus |
3L | 12754677..12754718 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:46 Download gff for
BO06871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12746395..12746444 | 887..936 | 96 | <- | Minus |
arm_3L | 12746505..12746713 | 678..886 | 100 | <- | Minus |
arm_3L | 12746776..12747316 | 137..677 | 100 | <- | Minus |
arm_3L | 12747642..12747719 | 59..136 | 100 | <- | Minus |
arm_3L | 12747777..12747818 | 17..58 | 100 | | Minus |
BO06871.pep Sequence
Translation from 16 to 952
> BO06871.pep
MTDPNVPRGALSLQNVLKYTVQHHDPNPEAAPKLETPDPERAQFLANALN
AMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKL
GGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAK
NLSHSNPNTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTN
VYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDDFDIKQETTL
FALSSLSRESELKLSTEKREEILSKLQQIISKNKQSETCEDMVNYARNIF
DNLSAHASFLDH
BO06871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-PB | 306 | CG10973-PB | 1..306 | 1..306 | 1530 | 100 | Plus |