Clone Sequence Records
BO06872.3prime Sequence
908 bp (811 high quality bases) assembled on 2005-12-03
> BO06872.3prime
ATGGTCTAGAAAGCTTGCTTTTGATGTGCTCTTGTAGACGTCAACAAATG
CGCTTAGTTCTTTGTTTATATCGCTAGCCACGGTGACCAGAGGATCCTTG
TCCACTTCAGATACAAATACCAGGCATTCTTCATTTAAAGATTTGGCCAA
TATAGGGCAAAACTCATGGAGAAAACCCCTTTCTGAATTACTATGATTGC
AGAGAAGAACGGTGGTATTGTTGTGAGTAAACTCCAGAACTTCGTGATGG
GACATTTCGCCGGTAATGATAAGATCCGCTTGGATACCCTTCAGCAGAGA
TGCTCCAGAGCCGGCACAAATGCCGACGGATTGGATGAGTGTCTTGGGGG
TGTGGCCCACAGCTAGAGCAACGTGCACGCTGTTTCTAATGCGCTTTTGC
AGAGACTCCACCACCTGGGAAAGCTCCATTTTGGTTTCTATATATCTACC
GGATCCGGTACCCGGAGGAGCACCCAACTCCGGTTCCAGAGGGCGGATGC
TGATGATATTCACTGCCTTAGATAGCCAGTCGTTGACGCCACCACTCTTC
TTATCCCACGCCGTGTGGGGCGAGTACAAGGCTATATCGTTGGCCAAGCA
TGCTGCCACCACGCGCTCCTTCCAATGTGACTGCGTAATCCTGGTCAGGG
GCTTGAAAATTGGCGGATGATAGCTGATTATGAGCTCCGCCTCCTTCTCT
AGCGCTTCTTTCACTACGGGCTCGGTTAAATCGTTAGTTAATAGTATTTT
CTTGATTTGTTTTTCGCGGTGCGGTTCGATCAGGAGTCCCACATTGTCCC
ACTTCTCTGCCCAAGAAGTCGGAGCAAAGTTCTCCAGCTCCTTGACCACA
GCCGCCAGCTTTTGACCACTAAAAGTGTTCATCCTTCTCAGCATGTCGAC
TGATAACT
BO06872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-PA | 879 | CG4278-RA | 1..876 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 1063 | CG4278-RA | 89..964 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16327157..16328032 | 894..19 | 4380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:11:29 has no hits.
BO06872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:10 Download gff for
BO06872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 1..879 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:10 Download gff for
BO06872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 1..879 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:32 Download gff for
BO06872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 85..971 | 10..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:36 Download gff for
BO06872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 85..971 | 10..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:36 Download gff for
BO06872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16327153..16328039 | 10..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:32 Download gff for
BO06872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16327153..16328039 | 10..901 | 99 | | Minus |
BO06872.5prime Sequence
851 bp (771 high quality bases) assembled on 2005-12-03
> BO06872.5prime
GAAGTTATCAGTCGACATGCTGAGAAGGATGAACACTTTTAGTGGTCAAA
AGCTGGCGGCTGTGGTCAAGGAGCTGGAGAACTTTGCTCCGACTTCTTGG
GCAGAGAAGTGGGACAATGTGGGACTCCTGATCGAACCGCACCGCGAAAA
ACAAATCAAGAAAATACTATTAACTAACGATTTAACCGAGCCCGTAGTGA
AAGAAGCGCTAGAGAAGGAGGCGGAGCTCATAATCAGCTATCATCCGCCA
ATTTTCAAGCCCCTGACCAGGATTACGCAGTCACATTGGAAGGAGCGCGT
GGTGGCAGCATGCTTGGCCAACGATATAGCCTTGTACTCGCCCCACACGG
CGTGGGATAAGAAGAGTGGTGGCGTCAACGACTGGCTATCTAAGGCAGTG
AATATCATCAGCATCCGCCCTCTGGAACCGGAGTTGGGTGCTCCTCCGGG
TACCGGATCCGGTAGATATATAGAAACCAAAATGGAGCTTTCCCAGGTGG
TGGAGTCTCTGCAAAAGCGCATTAGAAACAGCGTGCACGTTGCTCTAGCT
GTGGGCCACACCCCCAAGACACTCATCCAATCCGTCGGCATTTGTGCCGG
CTCTGGAGCATCTCTGCTGAAGGGTATCCAAGCGGATCTTATCATTACCG
GCGAAATGTCCCATCACGAAGTTCTGGAGTTTACTCACAACAATACCACC
GTTCTTCTCTGCAATCATAGTAATTCAGAAAGGGGTTTTCTCCATGAGTT
TTGCCCTATATTGGCCAAATCTTTAAATGAAGAATGCCTGGTATTTGTAT
CTGAAGTGGACAAGGATCCTCTGGTCACCGTGGCTAGCGATATAAACAAA
G
BO06872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-PA | 879 | CG4278-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 1063 | CG4278-RA | 89..923 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16327157..16327991 | 17..851 | 4175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:11:43 has no hits.
BO06872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:11 Download gff for
BO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:11 Download gff for
BO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:34 Download gff for
BO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 85..923 | 10..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:05 Download gff for
BO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 85..923 | 10..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:05 Download gff for
BO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16327153..16327991 | 10..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:34 Download gff for
BO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16327153..16327991 | 10..851 | 99 | | Plus |
BO06872.complete Sequence
910 bp (910 high quality bases) assembled on 2005-11-28
GenBank Submission: FJ630574
> BO06872.complete
GAAGTTATCAGTCGACATGCTGAGAAGGATGAACACTTTTAGTGGTCAAA
AGCTGGCGGCTGTGGTCAAGGAGCTGGAGAACTTTGCTCCGACTTCTTGG
GCAGAGAAGTGGGACAATGTGGGACTCCTGATCGAACCGCACCGCGAAAA
ACAAATCAAGAAAATACTATTAACTAACGATTTAACCGAGCCCGTAGTGA
AAGAAGCGCTAGAGAAGGAGGCGGAGCTCATAATCAGCTATCATCCGCCA
ATTTTCAAGCCCCTGACCAGGATTACGCAGTCACATTGGAAGGAGCGCGT
GGTGGCAGCATGCTTGGCCAACGATATAGCCTTGTACTCGCCCCACACGG
CGTGGGATAAGAAGAGTGGTGGCGTCAACGACTGGCTATCTAAGGCAGTG
AATATCATCAGCATCCGCCCTCTGGAACCGGAGTTGGGTGCTCCTCCGGG
TACCGGATCCGGTAGATATATAGAAACCAAAATGGAGCTTTCCCAGGTGG
TGGAGTCTCTGCAAAAGCGCATTAGAAACAGCGTGCACGTTGCTCTAGCT
GTGGGCCACACCCCCAAGACACTCATCCAATCCGTCGGCATTTGTGCCGG
CTCTGGAGCATCTCTGCTGAAGGGTATCCAAGCGGATCTTATCATTACCG
GCGAAATGTCCCATCACGAAGTTCTGGAGTTTACTCACAACAATACCACC
GTTCTTCTCTGCAATCATAGTAATTCAGAAAGGGGTTTTCTCCATGAGTT
TTGCCCTATATTGGCCAAATCTTTAAATGAAGAATGCCTGGTATTTGTAT
CTGAAGTGGACAAGGATCCTCTGGTCACCGTGGCTAGCGATATAAACAAA
GAACTAAGCGCATTTGTTGACGTCTACAAGAGCACATCAAAAGCAAGCTT
TCTAGACCAT
BO06872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 879 | CG4278-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 1063 | CG4278-RA | 89..964 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16327157..16328032 | 17..892 | 4380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:00 has no hits.
BO06872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:26 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 1..879 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:05 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 83..969 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:42 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 89..960 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:26 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 83..969 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:20 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 89..960 | 17..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:20 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16327157..16328028 | 17..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:42 Download gff for
BO06872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16327157..16328028 | 17..888 | 100 | | Plus |
BO06872.pep Sequence
Translation from 16 to 910
> BO06872.pep
MLRRMNTFSGQKLAAVVKELENFAPTSWAEKWDNVGLLIEPHREKQIKKI
LLTNDLTEPVVKEALEKEAELIISYHPPIFKPLTRITQSHWKERVVAACL
ANDIALYSPHTAWDKKSGGVNDWLSKAVNIISIRPLEPELGAPPGTGSGR
YIETKMELSQVVESLQKRIRNSVHVALAVGHTPKTLIQSVGICAGSGASL
LKGIQADLIITGEMSHHEVLEFTHNNTTVLLCNHSNSERGFLHEFCPILA
KSLNEECLVFVSEVDKDPLVTVASDINKELSAFVDVYKSTSKASFLDH
BO06872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-PA | 292 | CG4278-PA | 1..292 | 1..292 | 1505 | 100 | Plus |
