Clone Sequence Records
BO06875.3prime Sequence
881 bp (880 high quality bases) assembled on 2005-12-03
> BO06875.3prime
ATGGTCTAGAAAGCTTGCTTTGGCCTTCCTTTCGGTGGCGTACAGATCTA
GACGTCTTTGCCCAAAGACGGGAATCTGCTGACGCACCTGCTCCACCTCG
GAGAAATCTATATCGGCCACCACGATTTCCTCGCCTTCACTGGCACTCTG
CTGCACCTTGGCCCATGGATTCACCACCATGGAATGGCCATAGGCTACAT
ACTCGGCGCTTGTGTCACGGGCTGGTGATGTTGTGACCACAAAGAGTTGG
TTGTCATTGGCACGGGATCGCTGCAATAGCTCCCAGTGCAGTGGACCAGT
GGTCATGTTGAATGCAGCCGGATAGATGATCATCTCGCAGCCTGCGTTGC
GATAGAGCCTCGCCATCTCCTCGAATCGAATATCGTAGCAGATGCCGATG
CCAATCTTGTGGCCATCTACGTTGATGATGGTGAAATCATTGCCTGCGGA
CAGCGTTTCCGACTCCTTGAAGCGAATGCCACCCTTGACATCTATGTCAA
AGAGATGCATCTTGCGATGCTTGGCCACAAGGTCACCAGTGGGTGACCAA
ACCGTGCAGGTGTTGTAGATGGCATCGTTTTCGCCCAGTTCAGGGATTGT
TCCGCCCACGATGTACACCTGGTGCTTCCTGGCCAAATTGGAGAGCTGTT
GCGAGGTATAGCCATCGGGAATGGTCTCGGAGTACTCCCGAAAGTACTTG
GTGCCGTATGGAGCATTAAAGCACTCCGGCAGAGTGATCAATCGGGGTTT
ATGCTCCTTGACCGCCGCCTCGATTTTGGTGACGGCGTTTTGGACATTGG
CCACTTTGTCCTTGGAACCCTTGAGCTGCAGCAGCGCCAAACGCATGATG
TTGCTAGTTTTGCTCATGTCGACTGATAACT
BO06875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 852 | CG8132-RA | 1..849 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..921 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402470 | 848..19 | 4150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:21:04 has no hits.
BO06875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:16 Download gff for
BO06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:18 Download gff for
BO06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:56 Download gff for
BO06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..930 | 10..879 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:48 Download gff for
BO06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..930 | 10..879 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:48 Download gff for
BO06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401641..9402479 | 10..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:56 Download gff for
BO06875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227363..5228201 | 10..848 | 99 | | Minus |
BO06875.5prime Sequence
881 bp (825 high quality bases) assembled on 2005-12-03
> BO06875.5prime
GAAGTTATCAGTCGACATGAGCAAAACTAGCAACATCATGCGTTTGGCGC
TGCTGCAGCTCAAGGGTTCCAAGGACAAAGTGGCCAATGTCCAAAACGCC
GTCACCAAAATCGAGGCGGCGGTCAAGGAGCATAAACCCCGATTGATCAC
TCTGCCGGAGTGCTTTAATGCTCCATACGGCACCAAGTACTTTCGGGAGT
ACTCCGAGACCATTCCCGATGGCTATACCTCGCAACAGCTCTCCAATTTG
GCCAGGAAGCACCAGGTGTACATCGTGGGCGGAACAATCCCTGAACTGGG
CGAAAACGATGCCATCTACAACACCTGCACGGTTTGGTCACCCACTGGTG
ACCTTGTGGCCAAGCATCGCAAGATGCATCTCTTTGACATAGATGTCAAG
GGTGGCATTCGCTTCAAGGAGTCGGAAACGCTGTCCGCAGGCAATGATTT
CACCATCATCAACGTAGATGGCCACAAGATTGGCATCGGCATCTGCTACG
ATATTCGATTCGAGGAGATGGCGAGGCTCTATCGCAACGCAGGCTGCGAG
ATGATCATCTATCCGGCTGCATTCAACATGACCACTGGTCCACTGCACTG
GGAGCTATTGCAGCGATCCCGTGCCAATGACAACCAACTCTTTGTGGTCA
CAACATCACCAGCCCGTGACACAAGCGCCGAGTATGTAGCCTATGGCCAT
TCCATGGTGGTGAATCCATGGGCCAAGGTGCAGCAGAGTGCCAGTGAAGG
CGAGGAAATCGTGGTGGCCGATATAGATTTCTCCGAGGTGGAGCAGGTGC
GTCAGCAGATTCCCGTCTTTGGGCAAAGACGTCTAGATCTGTACGCCACC
GAAAGGAAGGCCAAAGCAAGCTTTCTAGACC
BO06875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 852 | CG8132-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..921 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402470 | 36..865 | 4150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:48:52 has no hits.
BO06875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:17 Download gff for
BO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:20 Download gff for
BO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:00 Download gff for
BO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..930 | 5..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:18 Download gff for
BO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..930 | 5..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:18 Download gff for
BO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401641..9402479 | 36..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:00 Download gff for
BO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227363..5228201 | 36..874 | 99 | | Plus |
BO06875.complete Sequence
883 bp (883 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630575
> BO06875.complete
GAAGTTATCAGTCGACATGAGCAAAACTAGCAACATCATGCGTTTGGCGC
TGCTGCAGCTCAAGGGTTCCAAGGACAAAGTGGCCAATGTCCAAAACGCC
GTCACCAAAATCGAGGCGGCGGTCAAGGAGCATAAACCCCGATTGATCAC
TCTGCCGGAGTGCTTTAATGCTCCATACGGCACCAAGTACTTTCGGGAGT
ACTCCGAGACCATTCCCGATGGCTATACCTCGCAACAGCTCTCCAATTTG
GCCAGGAAGCACCAGGTGTACATCGTGGGCGGAACAATCCCTGAACTGGG
CGAAAACGATGCCATCTACAACACCTGCACGGTTTGGTCACCCACTGGTG
ACCTTGTGGCCAAGCATCGCAAGATGCATCTCTTTGACATAGATGTCAAG
GGTGGCATTCGCTTCAAGGAGTCGGAAACGCTGTCCGCAGGCAATGATTT
CACCATCATCAACGTAGATGGCCACAAGATTGGCATCGGCATCTGCTACG
ATATTCGATTCGAGGAGATGGCGAGGCTCTATCGCAACGCAGGCTGCGAG
ATGATCATCTATCCGGCTGCATTCAACATGACCACTGGTCCACTGCACTG
GGAGCTATTGCAGCGATCCCGTGCCAATGACAACCAACTCTTTGTGGTCA
CAACATCACCAGCCCGTGACACAAGCGCCGAGTATGTAGCCTATGGCCAT
TCCATGGTGGTGAATCCATGGGCCAAGGTGCAGCAGAGTGCCAGTGAAGG
CGAGGAAATCGTGGTGGCCGATATAGATTTCTCCGAGGTGGAGCAGGTGC
GTCAGCAGATTCCCGTCTTTGGGCAAAGACGTCTAGATCTGTACGCCACC
GAAAGGAAGGCCAAAGCAAGCTTTCTAGACCAT
BO06875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 852 | CG8132-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..921 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402470 | 36..865 | 4150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:42:08 has no hits.
BO06875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:30 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:35 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 38..905 | 5..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:16 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 73..921 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:30 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 38..905 | 5..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:07 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 73..921 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:07 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401567..9401585 | 17..35 | 100 | -> | Plus |
| 3R | 9401641..9402470 | 36..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:16 Download gff for
BO06875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227289..5227307 | 17..35 | 100 | -> | Plus |
| arm_3R | 5227363..5228192 | 36..867 | 99 | | Plus |
BO06875.pep Sequence
Translation from 16 to 883
> BO06875.pep
MSKTSNIMRLALLQLKGSKDKVANVQNAVTKIEAAVKEHKPRLITLPECF
NAPYGTKYFREYSETIPDGYTSQQLSNLARKHQVYIVGGTIPELGENDAI
YNTCTVWSPTGDLVAKHRKMHLFDIDVKGGIRFKESETLSAGNDFTIINV
DGHKIGIGICYDIRFEEMARLYRNAGCEMIIYPAAFNMTTGPLHWELLQR
SRANDNQLFVVTTSPARDTSAEYVAYGHSMVVNPWAKVQQSASEGEEIVV
ADIDFSEVEQVRQQIPVFGQRRLDLYATERKAKASFLDH
BO06875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 283 | CG8132-PA | 1..283 | 1..283 | 1473 | 100 | Plus |
| NitFhit-PA | 460 | CG7067-PA | 35..301 | 10..277 | 383 | 34.6 | Plus |
