Clone BO06876 Report

Search the DGRC for BO06876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG14103-RA
Protein status:BO06876.pep: validated full length
Sequenced Size:937

Clone Sequence Records

BO06876.3prime Sequence

934 bp (870 high quality bases) assembled on 2005-12-03

> BO06876.3prime
ATGGTCTAGAAAGCTTGCACTCAAATGGAGCACCTGATCAGTAACTCGAG
TAATTAAAGGATCCAGCTCGTGGTCCCCCAACTCCTGGTCCCACAGATCG
TACAGAGTATCCGTGGCTAGATTGACGGAGTTGTTCACGGCGGTTGTGTT
GAATGTTCGAAGGGAGAGGAAGATGACTGCATCCTCCACCAGAGGGCTGT
AGGTATCGCAGATTGTGTGCAGGGCTCGAGCTCCATTCGGCGCAATTTCA
TTTAGGTTCACTATTAAAAAAACCTTTCCATCGTTGATTTTTGATTTGAA
TTGTTCAATCGCCAAACCGTATTCCTTCATGTGCTCCTTCTTCATGTGAA
TCAGCTTTCGGGGACCACCAAAGCACATTGAAGCCTCAATGGCAATTTCA
TCGATCAGTTTCTCCAGCTTTGGATCCTGGTGCAGGAACAAAAATACACT
GGGGTGCTTGTCCTTTTTGTTAATCAGCCCCTCGATCCCCTTTTGCAGGG
CTCTCCATACTTTTTCCTGCTGCTGGGGATACTTTGTCCTGAGATCCTTA
AAGTCACACTGTTTCTCCTCTATAATGCTGGATCCGTACCCATAGACAAC
CAATAAACCAAATAGAACACCGGCAAGCGCTAGTTTAATACCGATGCCGT
TGTGATGTTCATTGATAGAATTGTGCTGCTCCTGCCTTGAACTCGGCCTA
GAAGTTGAAATACTGCGTCTTCTGGACTGATCGGTGGGTTTGGGAATACT
GGGTTCGTCATGGGATTCACTTTCTTCCAGTTCGTCGGCCGAAGATGTCC
CTTCCTCGTAGCTTTGTACCGGCTGCCTATTGTAGGAGTGGTCCTGGTCC
ACATCGTCCTTTGACTGGGAAAGAGCCCCAGGTTCGTTACCATGCAGTGG
TCGTCTCGCAGATTACTCATGTCGACTGATAACT

BO06876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PA 906 CG14103-RA 13..903 909..19 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 1221 CG14103-RB 52..954 920..19 4490 99.9 Minus
CG14103-RA 1036 CG14103-RA 52..954 920..19 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805029 367..920 2725 99.8 Plus
3L 28110227 3L 19804005..19804232 19..246 1140 100 Plus
3L 28110227 3L 19804288..19804410 247..369 615 100 Plus
Blast to na_te.dros performed 2015-02-11 16:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 798..759 110 75 Minus

BO06876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:19 Download gff for BO06876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:21 Download gff for BO06876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:59 Download gff for BO06876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..960 12..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:03 Download gff for BO06876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..960 12..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:03 Download gff for BO06876.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19803999..19804232 12..246 98 <- Plus
3L 19804288..19804409 247..368 100 <- Plus
3L 19804477..19805029 369..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:59 Download gff for BO06876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797099..19797332 12..246 98 <- Plus
arm_3L 19797388..19797509 247..368 100 <- Plus
arm_3L 19797577..19798129 369..920 99   Plus

BO06876.5prime Sequence

919 bp (800 high quality bases) assembled on 2005-12-03

> BO06876.5prime
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAAACACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGGAGTTGGGGGACACGAGCTGGATCCTTTATTACTCGAGTACTGATCA
NGTGCTCCATTGAGTGCAG

BO06876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PA 906 CG14103-RA 1..849 17..865 4195 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 1221 CG14103-RB 52..949 17..911 4374 99.3 Plus
CG14103-RA 1036 CG14103-RA 52..949 17..911 4374 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805029 571..17 2775 100 Minus
3L 28110227 3L 19804010..19804232 911..692 924 97.3 Minus
3L 28110227 3L 19804288..19804410 691..569 615 100 Minus
Blast to na_te.dros performed 2015-02-04 20:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 140..179 110 75 Plus

BO06876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:20 Download gff for BO06876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:22 Download gff for BO06876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:22 Download gff for BO06876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..953 17..919 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:53 Download gff for BO06876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..953 17..919 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:53 Download gff for BO06876.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19804001..19804232 692..919 95 <- Minus
3L 19804288..19804409 570..691 100 <- Minus
3L 19804477..19805029 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:22 Download gff for BO06876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797101..19797332 692..919 95 <- Minus
arm_3L 19797388..19797509 570..691 100 <- Minus
arm_3L 19797577..19798129 17..569 100   Minus

BO06876.complete Sequence

937 bp (937 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630576

> BO06876.complete
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAACAACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGGAGTTGGGGGACCACGAGCTGGATCCTTTAATTACTCGAGTTACTGA
TCAGGTGCTCCATTTGAGTGCAAGCTTTCTAGACCAT

BO06876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 906 CG14103-PB 1..903 17..919 4515 100 Plus
CG14103-RA 906 CG14103-PA 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 1221 CG14103-RB 52..954 17..919 4515 100 Plus
CG14103-RA 1036 CG14103-RA 52..954 17..919 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805029 571..17 2775 100 Minus
3L 28110227 3L 19804005..19804232 919..692 1140 100 Minus
3L 28110227 3L 19804288..19804410 691..569 615 100 Minus
Blast to na_te.dros performed 2014-11-28 01:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 140..179 110 75 Plus

BO06876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:31 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:36 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 41..949 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:11 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..954 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:32 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 41..949 17..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:50 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..954 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:50 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19804003..19804232 692..921 99 <- Minus
3L 19804288..19804409 570..691 100 <- Minus
3L 19804477..19805029 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:11 Download gff for BO06876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797103..19797332 692..921 99 <- Minus
arm_3L 19797388..19797509 570..691 100 <- Minus
arm_3L 19797577..19798129 17..569 100   Minus

BO06876.pep Sequence

Translation from 16 to 937

> BO06876.pep
MSNLARRPLHGNEPGALSQSKDDVDQDHSYNRQPVQSYEEGTSSADELEE
SESHDEPSIPKPTDQSRRRSISTSRPSSRQEQHNSINEHHNGIGIKLALA
GVLFGLLVVYGYGSSIIEEKQCDFKDLRTKYPQQQEKVWRALQKGIEGLI
NKKDKHPSVFLFLHQDPKLEKLIDEIAIEASMCFGGPRKLIHMKKEHMKE
YGLAIEQFKSKINDGKVFLIVNLNEIAPNGARALHTICDTYSPLVEDAVI
FLSLRTFNTTAVNNSVNLATDTLYDLWDQELGDHELDPLITRVTDQVLHL
SASFLDH

BO06876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PB 301 CG14103-PB 1..301 1..301 1566 100 Plus
CG14103-PA 301 CG14103-PA 1..301 1..301 1566 100 Plus