Clone Sequence Records
BO06876.3prime Sequence
934 bp (870 high quality bases) assembled on 2005-12-03
> BO06876.3prime
ATGGTCTAGAAAGCTTGCACTCAAATGGAGCACCTGATCAGTAACTCGAG
TAATTAAAGGATCCAGCTCGTGGTCCCCCAACTCCTGGTCCCACAGATCG
TACAGAGTATCCGTGGCTAGATTGACGGAGTTGTTCACGGCGGTTGTGTT
GAATGTTCGAAGGGAGAGGAAGATGACTGCATCCTCCACCAGAGGGCTGT
AGGTATCGCAGATTGTGTGCAGGGCTCGAGCTCCATTCGGCGCAATTTCA
TTTAGGTTCACTATTAAAAAAACCTTTCCATCGTTGATTTTTGATTTGAA
TTGTTCAATCGCCAAACCGTATTCCTTCATGTGCTCCTTCTTCATGTGAA
TCAGCTTTCGGGGACCACCAAAGCACATTGAAGCCTCAATGGCAATTTCA
TCGATCAGTTTCTCCAGCTTTGGATCCTGGTGCAGGAACAAAAATACACT
GGGGTGCTTGTCCTTTTTGTTAATCAGCCCCTCGATCCCCTTTTGCAGGG
CTCTCCATACTTTTTCCTGCTGCTGGGGATACTTTGTCCTGAGATCCTTA
AAGTCACACTGTTTCTCCTCTATAATGCTGGATCCGTACCCATAGACAAC
CAATAAACCAAATAGAACACCGGCAAGCGCTAGTTTAATACCGATGCCGT
TGTGATGTTCATTGATAGAATTGTGCTGCTCCTGCCTTGAACTCGGCCTA
GAAGTTGAAATACTGCGTCTTCTGGACTGATCGGTGGGTTTGGGAATACT
GGGTTCGTCATGGGATTCACTTTCTTCCAGTTCGTCGGCCGAAGATGTCC
CTTCCTCGTAGCTTTGTACCGGCTGCCTATTGTAGGAGTGGTCCTGGTCC
ACATCGTCCTTTGACTGGGAAAGAGCCCCAGGTTCGTTACCATGCAGTGG
TCGTCTCGCAGATTACTCATGTCGACTGATAACT
BO06876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-PA | 906 | CG14103-RA | 13..903 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 1221 | CG14103-RB | 52..954 | 920..19 | 4490 | 99.9 | Minus |
CG14103-RA | 1036 | CG14103-RA | 52..954 | 920..19 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19804475..19805029 | 367..920 | 2725 | 99.8 | Plus |
3L | 28110227 | 3L | 19804005..19804232 | 19..246 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 19804288..19804410 | 247..369 | 615 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 798..759 | 110 | 75 | Minus |
BO06876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:19 Download gff for
BO06876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:21 Download gff for
BO06876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:59 Download gff for
BO06876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..960 | 12..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:03 Download gff for
BO06876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..960 | 12..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:03 Download gff for
BO06876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19803999..19804232 | 12..246 | 98 | <- | Plus |
3L | 19804288..19804409 | 247..368 | 100 | <- | Plus |
3L | 19804477..19805029 | 369..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:59 Download gff for
BO06876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19797099..19797332 | 12..246 | 98 | <- | Plus |
arm_3L | 19797388..19797509 | 247..368 | 100 | <- | Plus |
arm_3L | 19797577..19798129 | 369..920 | 99 | | Plus |
BO06876.5prime Sequence
919 bp (800 high quality bases) assembled on 2005-12-03
> BO06876.5prime
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAAACACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGGAGTTGGGGGACACGAGCTGGATCCTTTATTACTCGAGTACTGATCA
NGTGCTCCATTGAGTGCAG
BO06876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-PA | 906 | CG14103-RA | 1..849 | 17..865 | 4195 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 1221 | CG14103-RB | 52..949 | 17..911 | 4374 | 99.3 | Plus |
CG14103-RA | 1036 | CG14103-RA | 52..949 | 17..911 | 4374 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19804475..19805029 | 571..17 | 2775 | 100 | Minus |
3L | 28110227 | 3L | 19804010..19804232 | 911..692 | 924 | 97.3 | Minus |
3L | 28110227 | 3L | 19804288..19804410 | 691..569 | 615 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 20:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 140..179 | 110 | 75 | Plus |
BO06876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:20 Download gff for
BO06876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:22 Download gff for
BO06876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:22 Download gff for
BO06876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..953 | 17..919 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:53 Download gff for
BO06876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..953 | 17..919 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:53 Download gff for
BO06876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19804001..19804232 | 692..919 | 95 | <- | Minus |
3L | 19804288..19804409 | 570..691 | 100 | <- | Minus |
3L | 19804477..19805029 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:22 Download gff for
BO06876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19797101..19797332 | 692..919 | 95 | <- | Minus |
arm_3L | 19797388..19797509 | 570..691 | 100 | <- | Minus |
arm_3L | 19797577..19798129 | 17..569 | 100 | | Minus |
BO06876.complete Sequence
937 bp (937 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630576
> BO06876.complete
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAACAACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGGAGTTGGGGGACCACGAGCTGGATCCTTTAATTACTCGAGTTACTGA
TCAGGTGCTCCATTTGAGTGCAAGCTTTCTAGACCAT
BO06876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 906 | CG14103-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
CG14103-RA | 906 | CG14103-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 1221 | CG14103-RB | 52..954 | 17..919 | 4515 | 100 | Plus |
CG14103-RA | 1036 | CG14103-RA | 52..954 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19804475..19805029 | 571..17 | 2775 | 100 | Minus |
3L | 28110227 | 3L | 19804005..19804232 | 919..692 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 19804288..19804410 | 691..569 | 615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 140..179 | 110 | 75 | Plus |
BO06876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:31 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:36 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 41..949 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:11 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..954 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:32 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 41..949 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:50 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..954 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:50 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19804003..19804232 | 692..921 | 99 | <- | Minus |
3L | 19804288..19804409 | 570..691 | 100 | <- | Minus |
3L | 19804477..19805029 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:11 Download gff for
BO06876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19797103..19797332 | 692..921 | 99 | <- | Minus |
arm_3L | 19797388..19797509 | 570..691 | 100 | <- | Minus |
arm_3L | 19797577..19798129 | 17..569 | 100 | | Minus |
BO06876.pep Sequence
Translation from 16 to 937
> BO06876.pep
MSNLARRPLHGNEPGALSQSKDDVDQDHSYNRQPVQSYEEGTSSADELEE
SESHDEPSIPKPTDQSRRRSISTSRPSSRQEQHNSINEHHNGIGIKLALA
GVLFGLLVVYGYGSSIIEEKQCDFKDLRTKYPQQQEKVWRALQKGIEGLI
NKKDKHPSVFLFLHQDPKLEKLIDEIAIEASMCFGGPRKLIHMKKEHMKE
YGLAIEQFKSKINDGKVFLIVNLNEIAPNGARALHTICDTYSPLVEDAVI
FLSLRTFNTTAVNNSVNLATDTLYDLWDQELGDHELDPLITRVTDQVLHL
SASFLDH
BO06876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-PB | 301 | CG14103-PB | 1..301 | 1..301 | 1566 | 100 | Plus |
CG14103-PA | 301 | CG14103-PA | 1..301 | 1..301 | 1566 | 100 | Plus |