Clone Sequence Records
BO06877.3prime Sequence
910 bp (879 high quality bases) assembled on 2005-12-03
> BO06877.3prime
ATGGTCTAGAAAGCTTGCGTTGGAATCCTCTGAGCTGTCACTGTAGGCAG
CCAAGAGGGAAAGTCCAGCTGGAGCGGCAGCTGGCTGATTTGTAGCTTTA
GTTTCCGCTGGTGCAGACACAACTGAGGGCGTGGTTGCGGCTGGTTTGGA
TTCAACTTGCGTCGTTCCAGTGGCTACCGTGGGCTTTGCTACTGCGGTTG
CCTTGGGCTTGACCAGCACCAATGGTGTCTTCCTTTTAACCATTGACTGC
GCTGCGGATGCTTTGCTGGAGGATGTGGCGGAAAGACTGATCGTGCTGGG
CTTGGCCTGTTTGGCTGGTGGAGGAGCTGACGGTGTGTCCAACGGTTCAT
CCTTGATCTCCTCAATGATTTCCTCAGCGACAACACGAGAGCTTCCTTCT
GGCTTGTTCTTAAAGTTTACGGACTTAATAAAATCCTCGTCTTCGCGCTC
CTCCCGCTCCTGGCGCTCTCTCTCCGTCTCCACCGTGTTGTACTGCTGCA
GCAGAGTGTTGTAGTCCACTGTCTGCTGACGCCGGTTGAGATCACGCAAC
TCCTCCAGGCTCTCGATCGTTTCGATCTCGTTGCGCGACTGTTGGGTGCG
ATTCTCGAGCAGCTTCATCGGATTGTTGGCCTCCTCATCGCGCAATTCCT
GCTCCTCGCGACGTGCCTGTTCCTCGGCCAACTTGAGTGCCATGAAATTC
CTGGTGGCCCCCGCCTCAATCTCGTAGTCCGTGTTCTGTGGATCTGTCTT
GAAGGAGATCTCCTGCAGGCAGCGCGTGCACTTGATGTAGAACCGATAGA
TCCTGATGCCCAGGTACGTTTCGTTCTCCACGTCCTCCTTGCGAGCGTTG
AATTTCTTGCCCTTGTATATGTATTCCCCACACGTTTTGCAGCGCATATT
AAATGGAGCC
BO06877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-PA | 1002 | CG8435-RA | 108..999 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1148 | CG8435-RA | 186..1077 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16170135..16170622 | 423..910 | 2440 | 100 | Plus |
| 2R | 25286936 | 2R | 16169671..16170080 | 19..428 | 2035 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:06:10 has no hits.
BO06877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:21 Download gff for
BO06877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 108..1002 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:24 Download gff for
BO06877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 108..1002 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:18 Download gff for
BO06877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 186..1089 | 10..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:46 Download gff for
BO06877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 186..1089 | 10..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:46 Download gff for
BO06877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16169658..16170076 | 10..424 | 99 | <- | Plus |
| 2R | 16170137..16170622 | 425..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:18 Download gff for
BO06877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12057163..12057581 | 10..424 | 99 | <- | Plus |
| arm_2R | 12057642..12058127 | 425..910 | 100 | | Plus |
BO06877.5prime Sequence
955 bp (794 high quality bases) assembled on 2005-12-03
> BO06877.5prime
GAAGTTATCAGTCGACATGTCCGAGCGAAAGGTCTTAAACAAATACTATC
CCCCGGACTTCGATCCATCGAAGATTCCGCGCATGAAACTGGCCAAAAAC
CGGCAGTACACCGTGAGATTGATGGCTCCATTTAATATGCGCTGCAAAAC
GTGTGGGGAATACATATACAAGGGCAAGAAATTCAACGCTCGCAAGGAGG
ACGTGGAGAACGAAACGTACCTGGGCATCAGGATCTATCGGTTCTACATC
AAGTGCACGCGCTGCCTGCAGGAGATCTCCTTCAAGACAGATCCACAGAA
CACGGACTACGAGATTGAGGCGGGGGCCACCAGGAATTTCATGGCACTCA
AGTTGGCCGAGGAACAGGCACGTCGCGAGGAGCAGGAATTGCGCGATGAG
GAGGCCAACAATCCGATGAAGCTGCTCGAGAATCGCACCCAACAGTCGCG
CAACGAGATCGAAACGATCGAGAGCCTGGAGGAGTTGCGTGATCTCAACC
GGCGTCAGCAGACAGTGGACTACAACACTCTGCTGCAGCAGTACAACACG
GTGGAGACGGAGAGAGAGCGCCAGGAGCGGGAGGAGCGCGAAGACGAGGA
TTTTATTAAGTCCGTAAACTTTAAGAACAAGCCAGAAGGAAGCTCTCGTG
TTGTCGCTGAGGAAATCATTGAGGAGATCAAGGATGAACCGTTGGACACA
CCGTCAGCTCCTCCACCAGCCAAACAGGCCAAGCCCAGCACGATCAGTCT
TTCCGCCACATCCTCCAGCAAAGCATCCGCAGCGCAGTCAATGGTTAAAA
GGAAGACACCATTGGTGCTGGTCAAGCCCAAGGCAACCGCAGTAGCAAAG
CCCACGGTAGCCACTGGAACGACGCAAGTTGAATCAAAACCAGCCGCAAC
CACGCCCTCAGTTGTGTCTGCACCAGCGGAAACTAAAGCTACAAATCAGC
CAGCT
BO06877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-PA | 1002 | CG8435-RA | 1..939 | 17..955 | 4670 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1148 | CG8435-RA | 79..1017 | 17..955 | 4680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16170135..16170705 | 611..41 | 2855 | 100 | Minus |
| 2R | 25286936 | 2R | 16169731..16170080 | 955..606 | 1720 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:49:00 has no hits.
BO06877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:22 Download gff for
BO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:25 Download gff for
BO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:02 Download gff for
BO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 71..1017 | 8..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:23 Download gff for
BO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 71..1017 | 8..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:23 Download gff for
BO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16169731..16170076 | 610..955 | 99 | <- | Minus |
| 2R | 16170137..16170705 | 41..609 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:02 Download gff for
BO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12057236..12057581 | 610..955 | 99 | <- | Minus |
| arm_2R | 12057642..12058210 | 41..609 | 100 | <- | Minus |
BO06877.complete Sequence
1033 bp (1033 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630577
> BO06877.complete
GAAGTTATCAGTCGACATGTCCGAGCGAAAGGTCTTAAACAAATACTATC
CCCCGGACTTCGATCCATCGAAGATTCCGCGCATGAAACTGGCCAAAAAC
CGGCAGTACACCGTGAGATTGATGGCTCCATTTAATATGCGCTGCAAAAC
GTGTGGGGAATACATATACAAGGGCAAGAAATTCAACGCTCGCAAGGAGG
ACGTGGAGAACGAAACGTACCTGGGCATCAGGATCTATCGGTTCTACATC
AAGTGCACGCGCTGCCTGCAGGAGATCTCCTTCAAGACAGATCCACAGAA
CACGGACTACGAGATTGAGGCGGGGGCCACCAGGAATTTCATGGCACTCA
AGTTGGCCGAGGAACAGGCACGTCGCGAGGAGCAGGAATTGCGCGATGAG
GAGGCCAACAATCCGATGAAGCTGCTCGAGAATCGCACCCAACAGTCGCG
CAACGAGATCGAAACGATCGAGAGCCTGGAGGAGTTGCGTGATCTCAACC
GGCGTCAGCAGACAGTGGACTACAACACTCTGCTGCAGCAGTACAACACG
GTGGAGACGGAGAGAGAGCGCCAGGAGCGGGAGGAGCGCGAAGACGAGGA
TTTTATTAAGTCCGTAAACTTTAAGAACAAGCCAGAAGGAAGCTCTCGTG
TTGTCGCTGAGGAAATCATTGAGGAGATCAAGGATGAACCGTTGGACACA
CCGTCAGCTCCTCCACCAGCCAAACAGGCCAAGCCCAGCACGATCAGTCT
TTCCGCCACATCCTCCAGCAAAGCATCCGCAGCGCAGTCAATGGTTAAAA
GGAAGACACCATTGGTGCTGGTCAAGCCCAAGGCAACCGCAGTAGCAAAG
CCCACGGTAGCCACTGGAACGACGCAAGTTGAATCCAAACCAGCCGCAAC
CACGCCCTCAGTTGTGTCTGCACCAGCGGAAACTAAAGCTACAAATCAGC
CAGCTGCCGCTCCAGCTGGACTTTCCCTCTTGGCTGCCTACAGTGACAGC
TCAGAGGATTCCAACGCAAGCTTTCTAGACCAT
BO06877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1002 | CG8435-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1148 | CG8435-RA | 79..1077 | 17..1015 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16170135..16170705 | 611..41 | 2855 | 100 | Minus |
| 2R | 25286936 | 2R | 16169671..16170080 | 1015..606 | 2035 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:39 has no hits.
BO06877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:15 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 1..1002 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:13 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 59..1077 | 8..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:14 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 79..1077 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:16 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 59..1077 | 8..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:20 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 79..1077 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:20 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16169667..16170076 | 610..1017 | 99 | <- | Minus |
| 2R | 16170137..16170705 | 41..609 | 100 | <- | Minus |
| 2R | 16170760..16170783 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:14 Download gff for
BO06877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12057172..12057581 | 610..1017 | 99 | <- | Minus |
| arm_2R | 12057642..12058210 | 41..609 | 100 | <- | Minus |
| arm_2R | 12058265..12058288 | 17..40 | 100 | | Minus |
BO06877.pep Sequence
Translation from 16 to 1033
> BO06877.pep
MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCKTCGEYI
YKGKKFNARKEDVENETYLGIRIYRFYIKCTRCLQEISFKTDPQNTDYEI
EAGATRNFMALKLAEEQARREEQELRDEEANNPMKLLENRTQQSRNEIET
IESLEELRDLNRRQQTVDYNTLLQQYNTVETERERQEREEREDEDFIKSV
NFKNKPEGSSRVVAEEIIEEIKDEPLDTPSAPPPAKQAKPSTISLSATSS
SKASAAQSMVKRKTPLVLVKPKATAVAKPTVATGTTQVESKPAATTPSVV
SAPAETKATNQPAAAPAGLSLLAAYSDSSEDSNASFLDH
BO06877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-PA | 333 | CG8435-PA | 1..333 | 1..333 | 1687 | 100 | Plus |
| CG15084-PA | 316 | CG15084-PA | 1..204 | 1..195 | 185 | 26.9 | Plus |
