Clone Sequence Records
BO06879.3prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO06879.3prime
ATGGTCTAGAAAGCTTGCATCGCGTAGGGCGTCGATTTCCAATCGAAGCT
TCTGAATCTTAAGCAAAGTCAGTGTGCGCTCTACTTTTAGATTGTCCGTT
TCCGTTTTAAGAAACTTGGTCTTACTCTGGAACTGACTGATCTCGGCTCG
CGCCTTTTCCGCTCGCAATGCAGCTAAACCATTTCTTGGCCTGGCCTCGA
TGATCGTCGCCGATCCATTGGCTAAGTCATCCGGGTTTTGCTGCAATATG
TAATGTTCTTTGCTTTCGTCCAGGTACTCAGAGTATTCGGGATTTTTAAT
TTCAACGTTGGAAATTTCAAATTCCAAATTTTGCTCGCCAGACTCTTCCG
TTTTGGTCAGTTTCCTTTTGCGAATTTCTCGTTTCACTCTGGGTTGCTCC
TTGGGCGCCTCAGCCTCGTCAGCATCGTCCAGAATTTGTTGTATCTTAAC
AATGATCTCCTTGCCTTCGTTGGCATTATCCAGGCCGCCATCATCGTCGC
CCGAAATCTTCTGGATCTTTATCCTAGGAGCCTCGTCATGATCCTTCTCG
TCGGCAGAAGTGTACACTACAGCGCTTCTACTTCGCCGGGCATCGCAGGT
TTGCCTGTGTAACGATAGCCGGGATAGCGCCGTATTTTGGAGTACTTTTT
CGCAGAAGTGACAGGTGGCCGAGTATTTGCCATTCTCCAAATTGGCGGTA
AATCCGTGGGTTCTGTAAAAATCCTCGGACTTCTTTCGGGGCATGTCGAC
TGATAACT
BO06879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8436-PA | 729 | CG8436-RA | 1..726 | 744..19 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 963 | CG8436-RA | 85..810 | 744..19 | 3630 | 100 | Minus |
Ibf1-RB | 948 | CG8436-RB | 85..795 | 744..19 | 3395 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9260011..9260247 | 255..19 | 1185 | 100 | Minus |
3R | 32079331 | 3R | 9259766..9259956 | 446..256 | 955 | 100 | Minus |
3R | 32079331 | 3R | 9259048..9259188 | 744..604 | 705 | 100 | Minus |
3R | 32079331 | 3R | 9259252..9259341 | 606..517 | 450 | 100 | Minus |
3R | 32079331 | 3R | 9259630..9259703 | 518..445 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:45:11 has no hits.
BO06879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:26 Download gff for
BO06879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:29 Download gff for
BO06879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:51 Download gff for
BO06879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 85..813 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:39 Download gff for
BO06879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ibf1-RA | 85..813 | 15..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:39 Download gff for
BO06879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9259048..9259187 | 605..744 | 100 | -> | Minus |
3R | 9259254..9259341 | 517..604 | 100 | -> | Minus |
3R | 9259632..9259703 | 445..516 | 100 | -> | Minus |
3R | 9259768..9259956 | 256..444 | 100 | -> | Minus |
3R | 9260011..9260250 | 15..255 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:51 Download gff for
BO06879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5084770..5084909 | 605..744 | 100 | -> | Minus |
arm_3R | 5084976..5085063 | 517..604 | 100 | -> | Minus |
arm_3R | 5085354..5085425 | 445..516 | 100 | -> | Minus |
arm_3R | 5085490..5085678 | 256..444 | 100 | -> | Minus |
arm_3R | 5085733..5085972 | 15..255 | 99 | | Minus |
BO06879.5prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO06879.5prime
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATGCAAGCTT
TCTAGACC
BO06879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8436-PA | 729 | CG8436-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 963 | CG8436-RA | 85..810 | 17..742 | 3630 | 100 | Plus |
Ibf1-RB | 948 | CG8436-RB | 85..795 | 17..742 | 3395 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9260011..9260247 | 506..742 | 1185 | 100 | Plus |
3R | 32079331 | 3R | 9259766..9259956 | 315..505 | 955 | 100 | Plus |
3R | 32079331 | 3R | 9259048..9259188 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9259252..9259341 | 155..244 | 450 | 100 | Plus |
3R | 32079331 | 3R | 9259630..9259703 | 243..316 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:28:29 has no hits.
BO06879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:27 Download gff for
BO06879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:30 Download gff for
BO06879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:44 Download gff for
BO06879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 85..813 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:30 Download gff for
BO06879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ibf1-RA | 85..813 | 17..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:30 Download gff for
BO06879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9259768..9259956 | 317..505 | 100 | -> | Plus |
3R | 9260011..9260250 | 506..746 | 99 | | Plus |
3R | 9259048..9259187 | 17..156 | 100 | -> | Plus |
3R | 9259254..9259341 | 157..244 | 100 | -> | Plus |
3R | 9259632..9259703 | 245..316 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:44 Download gff for
BO06879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5084770..5084909 | 17..156 | 100 | -> | Plus |
arm_3R | 5084976..5085063 | 157..244 | 100 | -> | Plus |
arm_3R | 5085354..5085425 | 245..316 | 100 | -> | Plus |
arm_3R | 5085490..5085678 | 317..505 | 100 | -> | Plus |
arm_3R | 5085733..5085972 | 506..746 | 99 | | Plus |
BO06879.complete Sequence
760 bp (760 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630579
> BO06879.complete
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATGCAAGCTT
TCTAGACCAT
BO06879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 729 | CG8436-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Ibf1-RB | 714 | CG8436-PB | 1..711 | 17..742 | 3370 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 963 | CG8436-RA | 85..810 | 17..742 | 3630 | 100 | Plus |
Ibf1-RB | 948 | CG8436-RB | 85..795 | 17..742 | 3370 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9260011..9260247 | 506..742 | 1185 | 100 | Plus |
3R | 32079331 | 3R | 9259766..9259956 | 315..505 | 955 | 100 | Plus |
3R | 32079331 | 3R | 9259048..9259188 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9259252..9259341 | 155..244 | 450 | 100 | Plus |
3R | 32079331 | 3R | 9259630..9259703 | 243..316 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:46:56 has no hits.
BO06879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:18 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:16 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 80..808 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:25 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 85..810 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:18 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 80..808 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:28 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ibf1-RA | 85..810 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:28 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9259048..9259187 | 17..156 | 100 | -> | Plus |
3R | 9259254..9259341 | 157..244 | 100 | -> | Plus |
3R | 9259632..9259703 | 245..316 | 100 | -> | Plus |
3R | 9259768..9259956 | 317..505 | 100 | -> | Plus |
3R | 9260011..9260247 | 506..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:25 Download gff for
BO06879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5084770..5084909 | 17..156 | 100 | -> | Plus |
arm_3R | 5084976..5085063 | 157..244 | 100 | -> | Plus |
arm_3R | 5085354..5085425 | 245..316 | 100 | -> | Plus |
arm_3R | 5085490..5085678 | 317..505 | 100 | -> | Plus |
arm_3R | 5085733..5085969 | 506..744 | 99 | | Plus |
BO06879.pep Sequence
Translation from 16 to 760
> BO06879.pep
MPRKKSEDFYRTHGFTANLENGKYSATCHFCEKVLQNTALSRLSLHRQTC
DARRSRSAVVYTSADEKDHDEAPRIKIQKISGDDDGGLDNANEGKEIIVK
IQQILDDADEAEAPKEQPRVKREIRKRKLTKTEESGEQNLEFEISNVEIK
NPEYSEYLDESKEHYILQQNPDDLANGSATIIEARPRNGLAALRAEKARA
EISQFQSKTKFLKTETDNLKVERTLTLLKIQKLRLEIDALRDASFLDH
BO06879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-PA | 242 | CG8436-PA | 1..242 | 1..242 | 1228 | 100 | Plus |
Ibf1-PB | 237 | CG8436-PB | 1..237 | 1..242 | 1184 | 97.9 | Plus |