Clone BO06879 Report

Search the DGRC for BO06879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG8436-RA
Protein status:BO06879.pep: validated full length
Sequenced Size:760

Clone Sequence Records

BO06879.3prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO06879.3prime
ATGGTCTAGAAAGCTTGCATCGCGTAGGGCGTCGATTTCCAATCGAAGCT
TCTGAATCTTAAGCAAAGTCAGTGTGCGCTCTACTTTTAGATTGTCCGTT
TCCGTTTTAAGAAACTTGGTCTTACTCTGGAACTGACTGATCTCGGCTCG
CGCCTTTTCCGCTCGCAATGCAGCTAAACCATTTCTTGGCCTGGCCTCGA
TGATCGTCGCCGATCCATTGGCTAAGTCATCCGGGTTTTGCTGCAATATG
TAATGTTCTTTGCTTTCGTCCAGGTACTCAGAGTATTCGGGATTTTTAAT
TTCAACGTTGGAAATTTCAAATTCCAAATTTTGCTCGCCAGACTCTTCCG
TTTTGGTCAGTTTCCTTTTGCGAATTTCTCGTTTCACTCTGGGTTGCTCC
TTGGGCGCCTCAGCCTCGTCAGCATCGTCCAGAATTTGTTGTATCTTAAC
AATGATCTCCTTGCCTTCGTTGGCATTATCCAGGCCGCCATCATCGTCGC
CCGAAATCTTCTGGATCTTTATCCTAGGAGCCTCGTCATGATCCTTCTCG
TCGGCAGAAGTGTACACTACAGCGCTTCTACTTCGCCGGGCATCGCAGGT
TTGCCTGTGTAACGATAGCCGGGATAGCGCCGTATTTTGGAGTACTTTTT
CGCAGAAGTGACAGGTGGCCGAGTATTTGCCATTCTCCAAATTGGCGGTA
AATCCGTGGGTTCTGTAAAAATCCTCGGACTTCTTTCGGGGCATGTCGAC
TGATAACT

BO06879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8436-PA 729 CG8436-RA 1..726 744..19 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 963 CG8436-RA 85..810 744..19 3630 100 Minus
Ibf1-RB 948 CG8436-RB 85..795 744..19 3395 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9260011..9260247 255..19 1185 100 Minus
3R 32079331 3R 9259766..9259956 446..256 955 100 Minus
3R 32079331 3R 9259048..9259188 744..604 705 100 Minus
3R 32079331 3R 9259252..9259341 606..517 450 100 Minus
3R 32079331 3R 9259630..9259703 518..445 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:45:11 has no hits.

BO06879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:26 Download gff for BO06879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 15..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:29 Download gff for BO06879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 15..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:51 Download gff for BO06879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 85..813 15..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:39 Download gff for BO06879.3prime
Subject Subject Range Query Range Percent Splice Strand
Ibf1-RA 85..813 15..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:39 Download gff for BO06879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9259048..9259187 605..744 100 -> Minus
3R 9259254..9259341 517..604 100 -> Minus
3R 9259632..9259703 445..516 100 -> Minus
3R 9259768..9259956 256..444 100 -> Minus
3R 9260011..9260250 15..255 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:51 Download gff for BO06879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5084770..5084909 605..744 100 -> Minus
arm_3R 5084976..5085063 517..604 100 -> Minus
arm_3R 5085354..5085425 445..516 100 -> Minus
arm_3R 5085490..5085678 256..444 100 -> Minus
arm_3R 5085733..5085972 15..255 99   Minus

BO06879.5prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO06879.5prime
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATGCAAGCTT
TCTAGACC

BO06879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8436-PA 729 CG8436-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 963 CG8436-RA 85..810 17..742 3630 100 Plus
Ibf1-RB 948 CG8436-RB 85..795 17..742 3395 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9260011..9260247 506..742 1185 100 Plus
3R 32079331 3R 9259766..9259956 315..505 955 100 Plus
3R 32079331 3R 9259048..9259188 17..157 705 100 Plus
3R 32079331 3R 9259252..9259341 155..244 450 100 Plus
3R 32079331 3R 9259630..9259703 243..316 370 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:28:29 has no hits.

BO06879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:27 Download gff for BO06879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 17..746 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:30 Download gff for BO06879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:44 Download gff for BO06879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 85..813 17..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:30 Download gff for BO06879.5prime
Subject Subject Range Query Range Percent Splice Strand
Ibf1-RA 85..813 17..746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:30 Download gff for BO06879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9259768..9259956 317..505 100 -> Plus
3R 9260011..9260250 506..746 99   Plus
3R 9259048..9259187 17..156 100 -> Plus
3R 9259254..9259341 157..244 100 -> Plus
3R 9259632..9259703 245..316 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:44 Download gff for BO06879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5084770..5084909 17..156 100 -> Plus
arm_3R 5084976..5085063 157..244 100 -> Plus
arm_3R 5085354..5085425 245..316 100 -> Plus
arm_3R 5085490..5085678 317..505 100 -> Plus
arm_3R 5085733..5085972 506..746 99   Plus

BO06879.complete Sequence

760 bp (760 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630579

> BO06879.complete
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATGCAAGCTT
TCTAGACCAT

BO06879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 729 CG8436-PA 1..726 17..742 3630 100 Plus
Ibf1-RB 714 CG8436-PB 1..711 17..742 3370 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 963 CG8436-RA 85..810 17..742 3630 100 Plus
Ibf1-RB 948 CG8436-RB 85..795 17..742 3370 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9260011..9260247 506..742 1185 100 Plus
3R 32079331 3R 9259766..9259956 315..505 955 100 Plus
3R 32079331 3R 9259048..9259188 17..157 705 100 Plus
3R 32079331 3R 9259252..9259341 155..244 450 100 Plus
3R 32079331 3R 9259630..9259703 243..316 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:46:56 has no hits.

BO06879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:18 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 1..729 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:16 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 80..808 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:25 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 85..810 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:18 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 80..808 17..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:28 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
Ibf1-RA 85..810 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:28 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9259048..9259187 17..156 100 -> Plus
3R 9259254..9259341 157..244 100 -> Plus
3R 9259632..9259703 245..316 100 -> Plus
3R 9259768..9259956 317..505 100 -> Plus
3R 9260011..9260247 506..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:25 Download gff for BO06879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5084770..5084909 17..156 100 -> Plus
arm_3R 5084976..5085063 157..244 100 -> Plus
arm_3R 5085354..5085425 245..316 100 -> Plus
arm_3R 5085490..5085678 317..505 100 -> Plus
arm_3R 5085733..5085969 506..744 99   Plus

BO06879.pep Sequence

Translation from 16 to 760

> BO06879.pep
MPRKKSEDFYRTHGFTANLENGKYSATCHFCEKVLQNTALSRLSLHRQTC
DARRSRSAVVYTSADEKDHDEAPRIKIQKISGDDDGGLDNANEGKEIIVK
IQQILDDADEAEAPKEQPRVKREIRKRKLTKTEESGEQNLEFEISNVEIK
NPEYSEYLDESKEHYILQQNPDDLANGSATIIEARPRNGLAALRAEKARA
EISQFQSKTKFLKTETDNLKVERTLTLLKIQKLRLEIDALRDASFLDH

BO06879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-PA 242 CG8436-PA 1..242 1..242 1228 100 Plus
Ibf1-PB 237 CG8436-PB 1..237 1..242 1184 97.9 Plus