Clone Sequence Records
BO06880.5prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-03
> BO06880.5prime
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCGC
AAGCTTTCTAGACC
BO06880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6719-PA | 585 | CG6719-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 946 | CG6719-RA | 108..689 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11409209..11409605 | 499..103 | 1985 | 100 | Minus |
3R | 32079331 | 3R | 11409049..11409150 | 598..497 | 510 | 100 | Minus |
3R | 32079331 | 3R | 11409681..11409768 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:21:17 has no hits.
BO06880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:30 Download gff for
BO06880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:33 Download gff for
BO06880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:58 Download gff for
BO06880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..693 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:50 Download gff for
BO06880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..693 | 9..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:50 Download gff for
BO06880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11409045..11409148 | 499..603 | 98 | <- | Minus |
3R | 11409210..11409604 | 104..498 | 100 | <- | Minus |
3R | 11409682..11409772 | 9..103 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:58 Download gff for
BO06880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7234767..7234870 | 499..603 | 98 | <- | Minus |
arm_3R | 7234932..7235326 | 104..498 | 100 | <- | Minus |
arm_3R | 7235404..7235494 | 9..103 | 95 | | Minus |
BO06880.3prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-03
> BO06880.3prime
ATGGTCTAGAAAGCTTGCGGATGGGGTAGTGGCGGTGGTCTTGGTAGCGG
CCTGCCGCTTTTTCACGCCCCAGTTGTAGACCCGCGCCATGTTCACCTCC
GTAGTTGTGATTTGATCCCTCAGAAAATCCTGATCGTGCTCCACGGACTT
TAGGTTGCCCACGGCCGATGTGATGTTCTGGTTCAGCAGAGCCTCCGCCT
CGTCTAGCGGATACTCCAGCATCACGCTGGCCCCCAGCCAGAGGTATACT
GTTTTCGTGGGCGGCACCAGTGTCTTGATGAACACCTGGTCGCTGAGCAG
GAATTGCGTCTCGCGCTCCTCGTCCTCCTTGCGAAGCACATTGACCATTT
CCAGGGAGCGCTCCAGGTCCGGAATTTGAGACTTCAACTTGCGCCGCCGC
GCCTCCAGATTGCAGGCCATGAATCGATACTTGCCGTGCTGCTCGTCCAG
TCGCTGCAGCACCTTTTCGCAATTTTCGTTCTCCGGCTGCGACATGAAGG
TGTCGATCTCCTCCAGGAACACTGCCTCCGGGATGCCGGCGAAGGTCTTC
TGGTTTTCCGGTAATTTGGGCATTTCCACCGAGTCCATTATTCCTGTCAT
GTCGACTGATAACT
BO06880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6719-PA | 585 | CG6719-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 946 | CG6719-RA | 108..689 | 600..19 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11409209..11409605 | 118..514 | 1985 | 100 | Plus |
3R | 32079331 | 3R | 11409049..11409150 | 19..120 | 510 | 100 | Plus |
3R | 32079331 | 3R | 11409681..11409768 | 513..600 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:23:28 has no hits.
BO06880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:29 Download gff for
BO06880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:32 Download gff for
BO06880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:39 Download gff for
BO06880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..693 | 14..608 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:02 Download gff for
BO06880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..693 | 14..608 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:02 Download gff for
BO06880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11409045..11409148 | 14..118 | 98 | <- | Plus |
3R | 11409210..11409604 | 119..513 | 100 | <- | Plus |
3R | 11409682..11409772 | 514..608 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:39 Download gff for
BO06880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7234767..7234870 | 14..118 | 98 | <- | Plus |
arm_3R | 7234932..7235326 | 119..513 | 100 | <- | Plus |
arm_3R | 7235404..7235494 | 514..608 | 95 | | Plus |
BO06880.complete Sequence
616 bp assembled on 2006-12-18
GenBank Submission: FJ630580
> BO06880.complete
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCGC
AAGCTTTCTAGACCAT
BO06880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 585 | CG6719-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 946 | CG6719-RA | 108..689 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11409209..11409605 | 499..103 | 1985 | 100 | Minus |
3R | 32079331 | 3R | 11409049..11409150 | 598..497 | 510 | 100 | Minus |
3R | 32079331 | 3R | 11409681..11409768 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:47:04 has no hits.
BO06880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:26 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-RA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:50 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-RA | 106..695 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:53 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 108..689 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:26 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-RA | 106..695 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:27 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 108..689 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:27 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11409047..11409148 | 499..600 | 98 | <- | Minus |
3R | 11409210..11409604 | 104..498 | 100 | <- | Minus |
3R | 11409682..11409768 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:53 Download gff for
BO06880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7234769..7234870 | 499..600 | 98 | <- | Minus |
arm_3R | 7234932..7235326 | 104..498 | 100 | <- | Minus |
arm_3R | 7235404..7235490 | 17..103 | 100 | | Minus |
BO06880.pep Sequence
Translation from 16 to 616
> BO06880.pep
MTGIMDSVEMPKLPENQKTFAGIPEAVFLEEIDTFMSQPENENCEKVLQR
LDEQHGKYRFMACNLEARRRKLKSQIPDLERSLEMVNVLRKEDEERETQF
LLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNL
KSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQAATKTTATTPSASFLDH
BO06880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-PA | 194 | CG6719-PA | 1..194 | 1..194 | 993 | 100 | Plus |
CG15676-PB | 182 | CG15676-PB | 1..181 | 1..180 | 209 | 28.6 | Plus |
CG15676-PA | 182 | CG15676-PA | 1..181 | 1..180 | 209 | 28.6 | Plus |