Clone BO06880 Report

Search the DGRC for BO06880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG6719-RA
Protein status:BO06880.pep:
Sequenced Size:616

Clone Sequence Records

BO06880.5prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-03

> BO06880.5prime
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCGC
AAGCTTTCTAGACC

BO06880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6719-PA 585 CG6719-RA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 946 CG6719-RA 108..689 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 499..103 1985 100 Minus
3R 32079331 3R 11409049..11409150 598..497 510 100 Minus
3R 32079331 3R 11409681..11409768 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:21:17 has no hits.

BO06880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:30 Download gff for BO06880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 17..602 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:33 Download gff for BO06880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:58 Download gff for BO06880.5prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..693 9..603 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:50 Download gff for BO06880.5prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..693 9..603 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:50 Download gff for BO06880.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11409045..11409148 499..603 98 <- Minus
3R 11409210..11409604 104..498 100 <- Minus
3R 11409682..11409772 9..103 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:58 Download gff for BO06880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7234767..7234870 499..603 98 <- Minus
arm_3R 7234932..7235326 104..498 100 <- Minus
arm_3R 7235404..7235494 9..103 95   Minus

BO06880.3prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-03

> BO06880.3prime
ATGGTCTAGAAAGCTTGCGGATGGGGTAGTGGCGGTGGTCTTGGTAGCGG
CCTGCCGCTTTTTCACGCCCCAGTTGTAGACCCGCGCCATGTTCACCTCC
GTAGTTGTGATTTGATCCCTCAGAAAATCCTGATCGTGCTCCACGGACTT
TAGGTTGCCCACGGCCGATGTGATGTTCTGGTTCAGCAGAGCCTCCGCCT
CGTCTAGCGGATACTCCAGCATCACGCTGGCCCCCAGCCAGAGGTATACT
GTTTTCGTGGGCGGCACCAGTGTCTTGATGAACACCTGGTCGCTGAGCAG
GAATTGCGTCTCGCGCTCCTCGTCCTCCTTGCGAAGCACATTGACCATTT
CCAGGGAGCGCTCCAGGTCCGGAATTTGAGACTTCAACTTGCGCCGCCGC
GCCTCCAGATTGCAGGCCATGAATCGATACTTGCCGTGCTGCTCGTCCAG
TCGCTGCAGCACCTTTTCGCAATTTTCGTTCTCCGGCTGCGACATGAAGG
TGTCGATCTCCTCCAGGAACACTGCCTCCGGGATGCCGGCGAAGGTCTTC
TGGTTTTCCGGTAATTTGGGCATTTCCACCGAGTCCATTATTCCTGTCAT
GTCGACTGATAACT

BO06880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6719-PA 585 CG6719-RA 1..582 600..19 2910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 946 CG6719-RA 108..689 600..19 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 118..514 1985 100 Plus
3R 32079331 3R 11409049..11409150 19..120 510 100 Plus
3R 32079331 3R 11409681..11409768 513..600 440 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:23:28 has no hits.

BO06880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:29 Download gff for BO06880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 15..600 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:32 Download gff for BO06880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 15..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:39 Download gff for BO06880.3prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..693 14..608 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:02 Download gff for BO06880.3prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..693 14..608 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:02 Download gff for BO06880.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11409045..11409148 14..118 98 <- Plus
3R 11409210..11409604 119..513 100 <- Plus
3R 11409682..11409772 514..608 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:39 Download gff for BO06880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7234767..7234870 14..118 98 <- Plus
arm_3R 7234932..7235326 119..513 100 <- Plus
arm_3R 7235404..7235494 514..608 95   Plus

BO06880.complete Sequence

616 bp assembled on 2006-12-18

GenBank Submission: FJ630580

> BO06880.complete
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCGC
AAGCTTTCTAGACCAT

BO06880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 585 CG6719-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 946 CG6719-RA 108..689 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 499..103 1985 100 Minus
3R 32079331 3R 11409049..11409150 598..497 510 100 Minus
3R 32079331 3R 11409681..11409768 104..17 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:47:04 has no hits.

BO06880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:26 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:50 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 106..695 9..603 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:53 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 108..689 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:26 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 106..695 9..603 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:27 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 108..689 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:27 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11409047..11409148 499..600 98 <- Minus
3R 11409210..11409604 104..498 100 <- Minus
3R 11409682..11409768 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:53 Download gff for BO06880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7234769..7234870 499..600 98 <- Minus
arm_3R 7234932..7235326 104..498 100 <- Minus
arm_3R 7235404..7235490 17..103 100   Minus

BO06880.pep Sequence

Translation from 16 to 616

> BO06880.pep
MTGIMDSVEMPKLPENQKTFAGIPEAVFLEEIDTFMSQPENENCEKVLQR
LDEQHGKYRFMACNLEARRRKLKSQIPDLERSLEMVNVLRKEDEERETQF
LLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNL
KSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQAATKTTATTPSASFLDH

BO06880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-PA 194 CG6719-PA 1..194 1..194 993 100 Plus
CG15676-PB 182 CG15676-PB 1..181 1..180 209 28.6 Plus
CG15676-PA 182 CG15676-PA 1..181 1..180 209 28.6 Plus