Clone BO06885 Report

Search the DGRC for BO06885

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG13601-RA
Protein status:BO06885.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO06885.3prime Sequence

797 bp (796 high quality bases) assembled on 2005-12-03

> BO06885.3prime
ATGGTCTAGAAAGCTTGCAAGGTCGGCTGCTTTTGTAGGCAGTGAGCTGG
CAACGGCAACGGTGGCTGCCTCTCCCAGAGACTGCTCCAGCTGCACGGCC
ACCTCATCCAGGTGCTGGAGAGCCTCCTTGGCCTTGCGGTTGCGTCCGTC
CACGAAGATCTGCGTGTCCAGGAAGTGCAGGGCGCGGAAGGCCATACCGC
CTTGCGGGTCATATAAGCTGTCGAACTTTTTCGGATTCCTGGCGCTGGCA
CTCTGGTCCGGCGTGTCGGGATCGAAGGGCACGTATTCCTGAATCGGCTC
CTTGTGCCACCGGAAAATGTTTCGCGAATCTAGATCAGCCAGCACTCGCG
TCATTTCTCGTATCTGGGCATCCTGTCGCTCCAGCCGAAAGTTCATCTCC
GTCAGCATATTGGTTAGTTCCATCTTCTCCGATTGCGCCAACTCGTTTTT
CTTGTTCTCCTTGATGGTTTGACGTGAGTACTCGAAAATCAAAAGACCGG
CTCCGATCGAGAAGATGATGAACTCGCCAAGCAGATTGGCTCCCAGCTCA
ATGGCCATCGCCTCGTTCAGCGGTGGAACATTAACGCGACCACCCATGTT
CAGGGCCCACATCTTGGTCTTCACCTCTACCCAGTTGTAGAACTGTGCGG
GCGGCATGCATATGTACTTCCTGAAGAAGGGGCTCGATTTGGCATTGGAC
TTAATCACGTTGGCTATCGGCTTGCTGACCTGCTTGATGGCCAAAATGCC
GAGCTTGGCCGCCGGGAAGACGCCAATAACCATGTCGACTGATAACT

BO06885.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-PA 768 CG13601-RA 1..765 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-RB 1091 CG13601-RB 67..831 783..19 3825 100 Minus
CG13601-RA 1091 CG13601-RA 67..831 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23926632..23926944 19..331 1565 100 Plus
3R 32079331 3R 23927203..23927371 473..641 845 100 Plus
3R 32079331 3R 23926998..23927145 326..473 725 99.3 Plus
3R 32079331 3R 23927427..23927568 642..783 710 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:13:40 has no hits.

BO06885.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:39 Download gff for BO06885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-PA 1..768 16..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:43 Download gff for BO06885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-PA 1..768 16..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:24 Download gff for BO06885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 67..831 19..783 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:55 Download gff for BO06885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 67..831 19..783 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:55 Download gff for BO06885.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23927427..23927568 642..783 100   Plus
3R 23927203..23927371 473..641 100 <- Plus
3R 23926632..23926942 19..329 100 <- Plus
3R 23927002..23927144 330..472 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:24 Download gff for BO06885.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19752925..19753093 473..641 100 <- Plus
arm_3R 19752354..19752664 19..329 100 <- Plus
arm_3R 19752724..19752866 330..472 100 <- Plus
arm_3R 19753149..19753290 642..783 100   Plus

BO06885.5prime Sequence

797 bp (779 high quality bases) assembled on 2005-12-03

> BO06885.5prime
GAAGTTATCAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCG
GCATTTTGGCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAG
TCCAATGCCAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCC
CGCACAGTTCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGA
ACATGGGTGGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATT
GAGCTGGGAGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGC
CGGTCTTTTGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGA
AAAACGAGTTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACG
GAGATGAACTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGAC
GCGAGTGCTGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGG
AGCCGATTCAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGT
GCCAGCGCCAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGG
CGGTATGGCCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGG
ACGGACGCAACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTG
GCCGTGCAGCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGC
CAGCTCACTGCCTACAAAAGCAGCCGACCTTGCAAGCTTTCTAGACC

BO06885.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-PA 768 CG13601-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-RB 1091 CG13601-RB 67..831 17..781 3825 100 Plus
CG13601-RA 1091 CG13601-RA 67..831 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23926632..23926944 781..469 1565 100 Minus
3R 32079331 3R 23927203..23927371 327..159 845 100 Minus
3R 32079331 3R 23926998..23927145 474..327 725 99.3 Minus
3R 32079331 3R 23927427..23927568 158..17 710 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:49:47 has no hits.

BO06885.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:40 Download gff for BO06885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:44 Download gff for BO06885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:08 Download gff for BO06885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 67..831 17..781 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:33 Download gff for BO06885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 67..831 17..781 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:33 Download gff for BO06885.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23927203..23927371 159..327 100 <- Minus
3R 23927427..23927568 17..158 100   Minus
3R 23927002..23927144 328..470 100 <- Minus
3R 23926632..23926942 471..781 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:08 Download gff for BO06885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19752354..19752664 471..781 100 <- Minus
arm_3R 19752724..19752866 328..470 100 <- Minus
arm_3R 19752925..19753093 159..327 100 <- Minus
arm_3R 19753149..19753290 17..158 100   Minus

BO06885.complete Sequence

799 bp (799 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630581

> BO06885.complete
GAAGTTATCAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCG
GCATTTTGGCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAG
TCCAATGCCAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCC
CGCACAGTTCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGA
ACATGGGTGGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATT
GAGCTGGGAGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGC
CGGTCTTTTGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGA
AAAACGAGTTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACG
GAGATGAACTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGAC
GCGAGTGCTGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGG
AGCCGATTCAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGT
GCCAGCGCCAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGG
CGGTATGGCCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGG
ACGGACGCAACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTG
GCCGTGCAGCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGC
CAGCTCACTGCCTACAAAAGCAGCCGACCTTGCAAGCTTTCTAGACCAT

BO06885.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-RB 834 CG13601-PB 1..765 17..781 3825 100 Plus
CG13601-RA 768 CG13601-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-RB 1091 CG13601-RB 67..831 17..781 3825 100 Plus
CG13601-RA 1091 CG13601-RA 67..831 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23926632..23926944 781..469 1565 100 Minus
3R 32079331 3R 23927203..23927371 327..159 845 100 Minus
3R 32079331 3R 23926998..23927145 474..327 725 99.3 Minus
3R 32079331 3R 23927427..23927568 158..17 710 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:56:02 has no hits.

BO06885.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:07 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:02 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 65..829 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:01 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 67..831 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:07 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 65..829 17..781 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:23 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG13601-RA 67..831 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:23 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23927002..23927144 328..470 100 <- Minus
3R 23927203..23927371 159..327 100 <- Minus
3R 23927427..23927568 17..158 100   Minus
3R 23926628..23926942 471..783 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:01 Download gff for BO06885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753149..19753290 17..158 100   Minus
arm_3R 19752350..19752664 471..783 99 <- Minus
arm_3R 19752724..19752866 328..470 100 <- Minus
arm_3R 19752925..19753093 159..327 100 <- Minus

BO06885.pep Sequence

Translation from 16 to 799

> BO06885.pep
MVIGVFPAAKLGILAIKQVSKPIANVIKSNAKSSPFFRKYICMPPAQFYN
WVEVKTKMWALNMGGRVNVPPLNEAMAIELGANLLGEFIIFSIGAGLLIF
EYSRQTIKENKKNELAQSEKMELTNMLTEMNFRLERQDAQIREMTRVLAD
LDSRNIFRWHKEPIQEYVPFDPDTPDQSASARNPKKFDSLYDPQGGMAFR
ALHFLDTQIFVDGRNRKAKEALQHLDEVAVQLEQSLGEAATVAVASSLPT
KAADLASFLDH

BO06885.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13601-PA 255 CG13601-PA 1..255 1..255 1300 100 Plus
CG13601-PB 277 CG13601-PB 1..255 1..255 1300 100 Plus
CG43999-PC 166 CR43999-PC 1..153 1..153 315 38.6 Plus
CG43999-PB 166 CR43999-PB 1..153 1..153 315 38.6 Plus
CG43998-PD 153 CG43998-PD 1..152 1..152 264 35.5 Plus