Clone Sequence Records
BO06885.3prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-03
> BO06885.3prime
ATGGTCTAGAAAGCTTGCAAGGTCGGCTGCTTTTGTAGGCAGTGAGCTGG
CAACGGCAACGGTGGCTGCCTCTCCCAGAGACTGCTCCAGCTGCACGGCC
ACCTCATCCAGGTGCTGGAGAGCCTCCTTGGCCTTGCGGTTGCGTCCGTC
CACGAAGATCTGCGTGTCCAGGAAGTGCAGGGCGCGGAAGGCCATACCGC
CTTGCGGGTCATATAAGCTGTCGAACTTTTTCGGATTCCTGGCGCTGGCA
CTCTGGTCCGGCGTGTCGGGATCGAAGGGCACGTATTCCTGAATCGGCTC
CTTGTGCCACCGGAAAATGTTTCGCGAATCTAGATCAGCCAGCACTCGCG
TCATTTCTCGTATCTGGGCATCCTGTCGCTCCAGCCGAAAGTTCATCTCC
GTCAGCATATTGGTTAGTTCCATCTTCTCCGATTGCGCCAACTCGTTTTT
CTTGTTCTCCTTGATGGTTTGACGTGAGTACTCGAAAATCAAAAGACCGG
CTCCGATCGAGAAGATGATGAACTCGCCAAGCAGATTGGCTCCCAGCTCA
ATGGCCATCGCCTCGTTCAGCGGTGGAACATTAACGCGACCACCCATGTT
CAGGGCCCACATCTTGGTCTTCACCTCTACCCAGTTGTAGAACTGTGCGG
GCGGCATGCATATGTACTTCCTGAAGAAGGGGCTCGATTTGGCATTGGAC
TTAATCACGTTGGCTATCGGCTTGCTGACCTGCTTGATGGCCAAAATGCC
GAGCTTGGCCGCCGGGAAGACGCCAATAACCATGTCGACTGATAACT
BO06885.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-PA | 768 | CG13601-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 1091 | CG13601-RB | 67..831 | 783..19 | 3825 | 100 | Minus |
CG13601-RA | 1091 | CG13601-RA | 67..831 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23926632..23926944 | 19..331 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 23927203..23927371 | 473..641 | 845 | 100 | Plus |
3R | 32079331 | 3R | 23926998..23927145 | 326..473 | 725 | 99.3 | Plus |
3R | 32079331 | 3R | 23927427..23927568 | 642..783 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:13:40 has no hits.
BO06885.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:39 Download gff for
BO06885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 16..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:43 Download gff for
BO06885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 16..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:24 Download gff for
BO06885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..831 | 19..783 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:55 Download gff for
BO06885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..831 | 19..783 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:55 Download gff for
BO06885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927427..23927568 | 642..783 | 100 | | Plus |
3R | 23927203..23927371 | 473..641 | 100 | <- | Plus |
3R | 23926632..23926942 | 19..329 | 100 | <- | Plus |
3R | 23927002..23927144 | 330..472 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:24 Download gff for
BO06885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19752925..19753093 | 473..641 | 100 | <- | Plus |
arm_3R | 19752354..19752664 | 19..329 | 100 | <- | Plus |
arm_3R | 19752724..19752866 | 330..472 | 100 | <- | Plus |
arm_3R | 19753149..19753290 | 642..783 | 100 | | Plus |
BO06885.5prime Sequence
797 bp (779 high quality bases) assembled on 2005-12-03
> BO06885.5prime
GAAGTTATCAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCG
GCATTTTGGCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAG
TCCAATGCCAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCC
CGCACAGTTCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGA
ACATGGGTGGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATT
GAGCTGGGAGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGC
CGGTCTTTTGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGA
AAAACGAGTTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACG
GAGATGAACTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGAC
GCGAGTGCTGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGG
AGCCGATTCAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGT
GCCAGCGCCAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGG
CGGTATGGCCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGG
ACGGACGCAACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTG
GCCGTGCAGCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGC
CAGCTCACTGCCTACAAAAGCAGCCGACCTTGCAAGCTTTCTAGACC
BO06885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-PA | 768 | CG13601-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 1091 | CG13601-RB | 67..831 | 17..781 | 3825 | 100 | Plus |
CG13601-RA | 1091 | CG13601-RA | 67..831 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23926632..23926944 | 781..469 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23927203..23927371 | 327..159 | 845 | 100 | Minus |
3R | 32079331 | 3R | 23926998..23927145 | 474..327 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 23927427..23927568 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:49:47 has no hits.
BO06885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:40 Download gff for
BO06885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:44 Download gff for
BO06885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:08 Download gff for
BO06885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..831 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:33 Download gff for
BO06885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..831 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:33 Download gff for
BO06885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927203..23927371 | 159..327 | 100 | <- | Minus |
3R | 23927427..23927568 | 17..158 | 100 | | Minus |
3R | 23927002..23927144 | 328..470 | 100 | <- | Minus |
3R | 23926632..23926942 | 471..781 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:08 Download gff for
BO06885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19752354..19752664 | 471..781 | 100 | <- | Minus |
arm_3R | 19752724..19752866 | 328..470 | 100 | <- | Minus |
arm_3R | 19752925..19753093 | 159..327 | 100 | <- | Minus |
arm_3R | 19753149..19753290 | 17..158 | 100 | | Minus |
BO06885.complete Sequence
799 bp (799 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630581
> BO06885.complete
GAAGTTATCAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCG
GCATTTTGGCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAG
TCCAATGCCAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCC
CGCACAGTTCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGA
ACATGGGTGGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATT
GAGCTGGGAGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGC
CGGTCTTTTGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGA
AAAACGAGTTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACG
GAGATGAACTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGAC
GCGAGTGCTGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGG
AGCCGATTCAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGT
GCCAGCGCCAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGG
CGGTATGGCCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGG
ACGGACGCAACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTG
GCCGTGCAGCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGC
CAGCTCACTGCCTACAAAAGCAGCCGACCTTGCAAGCTTTCTAGACCAT
BO06885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 834 | CG13601-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
CG13601-RA | 768 | CG13601-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 1091 | CG13601-RB | 67..831 | 17..781 | 3825 | 100 | Plus |
CG13601-RA | 1091 | CG13601-RA | 67..831 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23926632..23926944 | 781..469 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23927203..23927371 | 327..159 | 845 | 100 | Minus |
3R | 32079331 | 3R | 23926998..23927145 | 474..327 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 23927427..23927568 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:02 has no hits.
BO06885.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:07 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:02 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 65..829 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:01 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..831 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:07 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 65..829 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:23 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..831 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:23 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23927002..23927144 | 328..470 | 100 | <- | Minus |
3R | 23927203..23927371 | 159..327 | 100 | <- | Minus |
3R | 23927427..23927568 | 17..158 | 100 | | Minus |
3R | 23926628..23926942 | 471..783 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:01 Download gff for
BO06885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753149..19753290 | 17..158 | 100 | | Minus |
arm_3R | 19752350..19752664 | 471..783 | 99 | <- | Minus |
arm_3R | 19752724..19752866 | 328..470 | 100 | <- | Minus |
arm_3R | 19752925..19753093 | 159..327 | 100 | <- | Minus |
BO06885.pep Sequence
Translation from 16 to 799
> BO06885.pep
MVIGVFPAAKLGILAIKQVSKPIANVIKSNAKSSPFFRKYICMPPAQFYN
WVEVKTKMWALNMGGRVNVPPLNEAMAIELGANLLGEFIIFSIGAGLLIF
EYSRQTIKENKKNELAQSEKMELTNMLTEMNFRLERQDAQIREMTRVLAD
LDSRNIFRWHKEPIQEYVPFDPDTPDQSASARNPKKFDSLYDPQGGMAFR
ALHFLDTQIFVDGRNRKAKEALQHLDEVAVQLEQSLGEAATVAVASSLPT
KAADLASFLDH
BO06885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-PA | 255 | CG13601-PA | 1..255 | 1..255 | 1300 | 100 | Plus |
CG13601-PB | 277 | CG13601-PB | 1..255 | 1..255 | 1300 | 100 | Plus |
CG43999-PC | 166 | CR43999-PC | 1..153 | 1..153 | 315 | 38.6 | Plus |
CG43999-PB | 166 | CR43999-PB | 1..153 | 1..153 | 315 | 38.6 | Plus |
CG43998-PD | 153 | CG43998-PD | 1..152 | 1..152 | 264 | 35.5 | Plus |