Clone Sequence Records
BO06887.3prime Sequence
923 bp (844 high quality bases) assembled on 2005-12-03
> BO06887.3prime
ATGGTCTAGAAAGCTTGCATTTCGAACTAAGCCCGATTGAAAACCATTGA
AATAGGGATGCTCCAAAATGTCCTTGGCGGAAATGCGATGAACTGGATCG
TAGATTAACATCTTTTGTATGAGATCAATACCATTCGCATCGAGATTCTT
TAACTGATTGGTCAATTGGTTCGTGGACCAGCAGGGGAACGTGTTCTTAT
AGTCGGGTAGCGAAGTAACGCCCGGCCAAATGTCTTCGGTAGGTGTTTTC
AGAATTCTAAACATTCTAAACAACTGGTCAATTTCCGAGTCACCCTGGAA
TAGCGGCTTTCTCGTTGCCATCTCCGCGAATATGCATCCAATGGACCAGA
TATCGACGGGACAGGAATACCGGGGTGAACCCAGTAGCACCTCCGGCGCT
CTGTACCACAAGGTAACAATCTCGTGCGTATAAATGCGCACCGGAATGCC
AAAGGATCGGCCAAGTCCAAAGTCGGCGACTTTTATGAGGCCACTCTTGT
CGATTAGTAAGTTCTGCGGCTTAAGATCACGGTGAAGTACTCGCCGACGA
TGGCAGAAAAGAATGGCGCTAGTTATTTGGTACAAATAGCTACGGACCAA
TTCACTCTCCATGTGCTTATCAACTGGCAGCGAATCCATGTATTTCTTGA
GGTCCATCGATAGGAATTCAAAGATCAAGTATATGCGGTTCTCCTCCATC
AAAACATCCTCCAAACAGACAATGTTTTCATGTTTCAACTCCTTAAGCAA
CGAAATTTCTCTGATCGCGGTTGATGGAACGCCTTCGTCGTCGGACTCCA
AGCGGATTTTCTTCATTGCCACAATTTGGCCCGTCAGGCGGTTGCGACCC
TTATACACCACGCCATATGTGCCCTCGCCAATCTTCTCAATTTTCTCAAA
ATCCTCCATGTCGACTGATAACT
BO06887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5363-PA | 894 | cdc2-RA | 1..891 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 1082 | CG5363-RA | 86..976 | 909..19 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10385140..10385646 | 257..763 | 2535 | 100 | Plus |
2L | 23513712 | 2L | 10384845..10385084 | 19..258 | 1200 | 100 | Plus |
2L | 23513712 | 2L | 10386029..10386177 | 761..909 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:12:07 has no hits.
BO06887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:41 Download gff for
BO06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-PA | 1..894 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:45 Download gff for
BO06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5363-PA | 1..894 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:37 Download gff for
BO06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 86..984 | 9..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:44 Download gff for
BO06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk1-RA | 86..984 | 9..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:44 Download gff for
BO06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10384837..10385082 | 9..256 | 98 | <- | Plus |
2L | 10385140..10385643 | 257..760 | 100 | <- | Plus |
2L | 10386029..10386177 | 761..909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:37 Download gff for
BO06887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10384837..10385082 | 9..256 | 98 | <- | Plus |
arm_2L | 10385140..10385643 | 257..760 | 100 | <- | Plus |
arm_2L | 10386029..10386177 | 761..909 | 100 | | Plus |
BO06887.5prime Sequence
872 bp (817 high quality bases) assembled on 2005-12-03
> BO06887.5prime
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCATACAAAAGATGTTAATCTACGATCCAGTTCATCGCATTTCCGCC
AGGACATTTTGGAGCATCCCTA
BO06887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5363-PA | 894 | cdc2-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 1082 | CG5363-RA | 86..942 | 17..872 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10385140..10385646 | 669..163 | 2535 | 100 | Minus |
2L | 23513712 | 2L | 10384879..10385084 | 872..668 | 980 | 99.5 | Minus |
2L | 23513712 | 2L | 10386029..10386177 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:51:06 has no hits.
BO06887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:42 Download gff for
BO06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-PA | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:47 Download gff for
BO06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5363-PA | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:57 Download gff for
BO06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 86..941 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:17 Download gff for
BO06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk1-RA | 86..941 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:17 Download gff for
BO06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10384880..10385082 | 670..871 | 99 | <- | Minus |
2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
2L | 10386029..10386177 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:57 Download gff for
BO06887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10384880..10385082 | 670..871 | 99 | <- | Minus |
arm_2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
arm_2L | 10386029..10386177 | 17..165 | 100 | | Minus |
BO06887.complete Sequence
925 bp (925 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630582
> BO06887.complete
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCATACAAAAGATGTTAATCTACGATCCAGTTCATCGCATTTCCGCC
AAGGACATTTTGGAGCATCCCTATTTCAATGGTTTTCAATCGGGCTTAGT
TCGAAATGCAAGCTTTCTAGACCAT
BO06887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 894 | CG5363-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 1082 | CG5363-RA | 86..976 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10385140..10385646 | 669..163 | 2535 | 100 | Minus |
2L | 23513712 | 2L | 10384845..10385084 | 907..668 | 1200 | 100 | Minus |
2L | 23513712 | 2L | 10386029..10386177 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:31 has no hits.
BO06887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:19 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:18 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 87..985 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:08:01 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 86..976 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:19 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 87..985 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:46 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk1-RA | 86..976 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:46 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10384843..10385082 | 670..909 | 99 | <- | Minus |
2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
2L | 10386029..10386177 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:08:01 Download gff for
BO06887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10384843..10385082 | 670..909 | 99 | <- | Minus |
arm_2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
arm_2L | 10386029..10386177 | 17..165 | 100 | | Minus |
BO06887.pep Sequence
Translation from 16 to 925
> BO06887.pep
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIR
EISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHM
ESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLG
RSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATR
KPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNTFPCWSTNQLT
NQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRNASF
LDH
BO06887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-PA | 297 | CG5363-PA | 1..297 | 1..297 | 1557 | 100 | Plus |
Cdk2-PC | 314 | CG10498-PC | 5..295 | 1..303 | 915 | 58.1 | Plus |
Cdk2-PB | 314 | CG10498-PB | 5..295 | 1..303 | 915 | 58.1 | Plus |
Cdk2-PA | 314 | CG10498-PA | 5..295 | 1..303 | 915 | 58.1 | Plus |
Cdk5-PA | 294 | CG8203-PA | 1..291 | 1..292 | 799 | 52.6 | Plus |