Clone BO06887 Report

Search the DGRC for BO06887

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptcdc2-RA
Protein status:BO06887.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO06887.3prime Sequence

923 bp (844 high quality bases) assembled on 2005-12-03

> BO06887.3prime
ATGGTCTAGAAAGCTTGCATTTCGAACTAAGCCCGATTGAAAACCATTGA
AATAGGGATGCTCCAAAATGTCCTTGGCGGAAATGCGATGAACTGGATCG
TAGATTAACATCTTTTGTATGAGATCAATACCATTCGCATCGAGATTCTT
TAACTGATTGGTCAATTGGTTCGTGGACCAGCAGGGGAACGTGTTCTTAT
AGTCGGGTAGCGAAGTAACGCCCGGCCAAATGTCTTCGGTAGGTGTTTTC
AGAATTCTAAACATTCTAAACAACTGGTCAATTTCCGAGTCACCCTGGAA
TAGCGGCTTTCTCGTTGCCATCTCCGCGAATATGCATCCAATGGACCAGA
TATCGACGGGACAGGAATACCGGGGTGAACCCAGTAGCACCTCCGGCGCT
CTGTACCACAAGGTAACAATCTCGTGCGTATAAATGCGCACCGGAATGCC
AAAGGATCGGCCAAGTCCAAAGTCGGCGACTTTTATGAGGCCACTCTTGT
CGATTAGTAAGTTCTGCGGCTTAAGATCACGGTGAAGTACTCGCCGACGA
TGGCAGAAAAGAATGGCGCTAGTTATTTGGTACAAATAGCTACGGACCAA
TTCACTCTCCATGTGCTTATCAACTGGCAGCGAATCCATGTATTTCTTGA
GGTCCATCGATAGGAATTCAAAGATCAAGTATATGCGGTTCTCCTCCATC
AAAACATCCTCCAAACAGACAATGTTTTCATGTTTCAACTCCTTAAGCAA
CGAAATTTCTCTGATCGCGGTTGATGGAACGCCTTCGTCGTCGGACTCCA
AGCGGATTTTCTTCATTGCCACAATTTGGCCCGTCAGGCGGTTGCGACCC
TTATACACCACGCCATATGTGCCCTCGCCAATCTTCTCAATTTTCTCAAA
ATCCTCCATGTCGACTGATAACT

BO06887.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5363-PA 894 cdc2-RA 1..891 909..19 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 1082 CG5363-RA 86..976 909..19 4455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 257..763 2535 100 Plus
2L 23513712 2L 10384845..10385084 19..258 1200 100 Plus
2L 23513712 2L 10386029..10386177 761..909 745 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:12:07 has no hits.

BO06887.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:41 Download gff for BO06887.3prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-PA 1..894 15..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:45 Download gff for BO06887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5363-PA 1..894 15..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:37 Download gff for BO06887.3prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 86..984 9..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:44 Download gff for BO06887.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 86..984 9..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:44 Download gff for BO06887.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10384837..10385082 9..256 98 <- Plus
2L 10385140..10385643 257..760 100 <- Plus
2L 10386029..10386177 761..909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:37 Download gff for BO06887.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384837..10385082 9..256 98 <- Plus
arm_2L 10385140..10385643 257..760 100 <- Plus
arm_2L 10386029..10386177 761..909 100   Plus

BO06887.5prime Sequence

872 bp (817 high quality bases) assembled on 2005-12-03

> BO06887.5prime
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCATACAAAAGATGTTAATCTACGATCCAGTTCATCGCATTTCCGCC
AGGACATTTTGGAGCATCCCTA

BO06887.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5363-PA 894 cdc2-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 1082 CG5363-RA 86..942 17..872 4260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 669..163 2535 100 Minus
2L 23513712 2L 10384879..10385084 872..668 980 99.5 Minus
2L 23513712 2L 10386029..10386177 165..17 745 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:51:06 has no hits.

BO06887.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:42 Download gff for BO06887.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-PA 1..856 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:47 Download gff for BO06887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5363-PA 1..856 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:57 Download gff for BO06887.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 86..941 17..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:17 Download gff for BO06887.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 86..941 17..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:17 Download gff for BO06887.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10384880..10385082 670..871 99 <- Minus
2L 10385140..10385643 166..669 100 <- Minus
2L 10386029..10386177 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:57 Download gff for BO06887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384880..10385082 670..871 99 <- Minus
arm_2L 10385140..10385643 166..669 100 <- Minus
arm_2L 10386029..10386177 17..165 100   Minus

BO06887.complete Sequence

925 bp (925 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630582

> BO06887.complete
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCATACAAAAGATGTTAATCTACGATCCAGTTCATCGCATTTCCGCC
AAGGACATTTTGGAGCATCCCTATTTCAATGGTTTTCAATCGGGCTTAGT
TCGAAATGCAAGCTTTCTAGACCAT

BO06887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 894 CG5363-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 1082 CG5363-RA 86..976 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 669..163 2535 100 Minus
2L 23513712 2L 10384845..10385084 907..668 1200 100 Minus
2L 23513712 2L 10386029..10386177 165..17 745 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:37:31 has no hits.

BO06887.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:19 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 1..894 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:18 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 87..985 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:08:01 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 86..976 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:19 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 87..985 17..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:46 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 86..976 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:46 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10384843..10385082 670..909 99 <- Minus
2L 10385140..10385643 166..669 100 <- Minus
2L 10386029..10386177 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:08:01 Download gff for BO06887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384843..10385082 670..909 99 <- Minus
arm_2L 10385140..10385643 166..669 100 <- Minus
arm_2L 10386029..10386177 17..165 100   Minus

BO06887.pep Sequence

Translation from 16 to 925

> BO06887.pep
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIR
EISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHM
ESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLG
RSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATR
KPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNTFPCWSTNQLT
NQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRNASF
LDH

BO06887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-PA 297 CG5363-PA 1..297 1..297 1557 100 Plus
Cdk2-PC 314 CG10498-PC 5..295 1..303 915 58.1 Plus
Cdk2-PB 314 CG10498-PB 5..295 1..303 915 58.1 Plus
Cdk2-PA 314 CG10498-PA 5..295 1..303 915 58.1 Plus
Cdk5-PA 294 CG8203-PA 1..291 1..292 799 52.6 Plus