Clone Sequence Records
BO06888.3prime Sequence
731 bp (702 high quality bases) assembled on 2005-12-03
> BO06888.3prime
ATGGTCTAGAAAGCTTGCATCATCCTGCTCATCCTCCTCCGCCAAGTGGG
ACAGTTGTAGTTTTCCCGCTGCACGGCTCTGTTCCGATTTGGTTTTGCAT
TTCTTTGGCTTATGCGGCTTTTGGCCAATTACATACTCAGGCATCACCAG
CTTGGAACCTCTTAACTGCGGCTTATCCAGCTCCACATCATCCACCTCCT
GCTGTTTGAGGCTCTTGAGCTTGCGGCTGAGTTTGCTGGTCCTCTTGAAC
TCGATCTTGCCATCTGTAGGTGGAGATTCGTTATCGACGCCCTCAGCCTC
GCGCTGTGCATCCATTTGTCGCAGGAAGGACAAGGCGGCGGCGGAGTTGC
TCTGTTCGGAAATGTCCACATCAGACAGGGAGTACTTCTTCCATTTGTGC
GGGTTTACCTGGTAATCTGGCGTTTTTCTTGGCTTCAAACAGCGTCCAAT
GGGGAGTTCGGGCTTCTTGAAAATGCTCTCCTTGCCGCGCATTCGTCGCA
GTCTTCCATCCTCCGCATCGAGGCCAGTAACAATGCTGCGACCCTGGCGG
TAGTTCATCACCTGTCCGGATTCGTTTCCGGATTTGTTTCCTCGATCGAG
GGCATTGATGGAAAACGCCTTGGCCTTGCTCTGATCCAAGGCAGTTCCCC
GCAACTCTTTGCTCGCATCGTCGAGACATGCGAAAAGAGCGTCTCGTTTG
GCTGAAAATTCCTGCATGTCGACTGATAACT
BO06888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-PA | 702 | CG6674-RA | 1..699 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 843 | CG6674-RA | 83..781 | 717..19 | 3495 | 100 | Minus |
CG6674-RB | 786 | CG6674-RB | 389..724 | 354..19 | 1680 | 100 | Minus |
CG6674-RB | 786 | CG6674-RB | 83..391 | 717..409 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9971213..9971604 | 19..410 | 1960 | 100 | Plus |
3L | 28110227 | 3L | 9971662..9971972 | 407..717 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:45:42 has no hits.
BO06888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:42 Download gff for
BO06888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:48 Download gff for
BO06888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:57 Download gff for
BO06888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 11..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:48 Download gff for
BO06888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 11..724 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:48 Download gff for
BO06888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9971207..9971602 | 11..408 | 98 | <- | Plus |
3L | 9971664..9971978 | 409..724 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:57 Download gff for
BO06888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9964307..9964702 | 11..408 | 98 | <- | Plus |
arm_3L | 9964764..9965078 | 409..724 | 99 | | Plus |
BO06888.5prime Sequence
731 bp (730 high quality bases) assembled on 2005-12-03
> BO06888.5prime
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATGCAAGCTTTCTAGACC
BO06888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-PA | 702 | CG6674-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 843 | CG6674-RA | 83..781 | 17..715 | 3495 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 389..724 | 380..715 | 1680 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 83..391 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9971213..9971604 | 715..324 | 1960 | 100 | Minus |
3L | 28110227 | 3L | 9971662..9971972 | 327..17 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:08:02 has no hits.
BO06888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:44 Download gff for
BO06888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:50 Download gff for
BO06888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:23 Download gff for
BO06888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 10..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:14 Download gff for
BO06888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 10..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:14 Download gff for
BO06888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9971207..9971602 | 326..723 | 98 | <- | Minus |
3L | 9971664..9971978 | 10..325 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:23 Download gff for
BO06888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9964307..9964702 | 326..723 | 98 | <- | Minus |
arm_3L | 9964764..9965078 | 10..325 | 99 | | Minus |
BO06888.complete Sequence
733 bp (733 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630583
> BO06888.complete
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATGCAAGCTTTCTAGACCAT
BO06888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 702 | CG6674-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
CG6674-RB | 645 | CG6674-PB | 307..642 | 380..715 | 1680 | 100 | Plus |
CG6674-RB | 645 | CG6674-PB | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 843 | CG6674-RA | 83..781 | 17..715 | 3495 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 389..724 | 380..715 | 1680 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 83..391 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9971213..9971604 | 715..324 | 1960 | 100 | Minus |
3L | 28110227 | 3L | 9971662..9971972 | 327..17 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:36:58 has no hits.
BO06888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:20 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:19 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 73..783 | 10..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:06 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 83..781 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:20 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 73..783 | 10..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:10 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 83..781 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:10 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9971664..9971972 | 17..325 | 100 | | Minus |
3L | 9971211..9971602 | 326..717 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:06 Download gff for
BO06888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9964311..9964702 | 326..717 | 99 | <- | Minus |
arm_3L | 9964764..9965072 | 17..325 | 100 | | Minus |
BO06888.pep Sequence
Translation from 16 to 733
> BO06888.pep
MQEFSAKRDALFACLDDASKELRGTALDQSKAKAFSINALDRGNKSGNES
GQVMNYRQGRSIVTGLDAEDGRLRRMRGKESIFKKPELPIGRCLKPRKTP
DYQVNPHKWKKYSLSDVDISEQSNSAAALSFLRQMDAQREAEGVDNESPP
TDGKIEFKRTSKLSRKLKSLKQQEVDDVELDKPQLRGSKLVMPEYVIGQK
PHKPKKCKTKSEQSRAAGKLQLSHLAEEDEQDDASFLDH
BO06888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-PA | 233 | CG6674-PA | 1..233 | 1..233 | 1192 | 100 | Plus |
CG6674-PB | 214 | CG6674-PB | 1..214 | 1..233 | 1058 | 91.8 | Plus |