Clone BO06888 Report

Search the DGRC for BO06888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG6674-RA
Protein status:BO06888.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO06888.3prime Sequence

731 bp (702 high quality bases) assembled on 2005-12-03

> BO06888.3prime
ATGGTCTAGAAAGCTTGCATCATCCTGCTCATCCTCCTCCGCCAAGTGGG
ACAGTTGTAGTTTTCCCGCTGCACGGCTCTGTTCCGATTTGGTTTTGCAT
TTCTTTGGCTTATGCGGCTTTTGGCCAATTACATACTCAGGCATCACCAG
CTTGGAACCTCTTAACTGCGGCTTATCCAGCTCCACATCATCCACCTCCT
GCTGTTTGAGGCTCTTGAGCTTGCGGCTGAGTTTGCTGGTCCTCTTGAAC
TCGATCTTGCCATCTGTAGGTGGAGATTCGTTATCGACGCCCTCAGCCTC
GCGCTGTGCATCCATTTGTCGCAGGAAGGACAAGGCGGCGGCGGAGTTGC
TCTGTTCGGAAATGTCCACATCAGACAGGGAGTACTTCTTCCATTTGTGC
GGGTTTACCTGGTAATCTGGCGTTTTTCTTGGCTTCAAACAGCGTCCAAT
GGGGAGTTCGGGCTTCTTGAAAATGCTCTCCTTGCCGCGCATTCGTCGCA
GTCTTCCATCCTCCGCATCGAGGCCAGTAACAATGCTGCGACCCTGGCGG
TAGTTCATCACCTGTCCGGATTCGTTTCCGGATTTGTTTCCTCGATCGAG
GGCATTGATGGAAAACGCCTTGGCCTTGCTCTGATCCAAGGCAGTTCCCC
GCAACTCTTTGCTCGCATCGTCGAGACATGCGAAAAGAGCGTCTCGTTTG
GCTGAAAATTCCTGCATGTCGACTGATAACT

BO06888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-PA 702 CG6674-RA 1..699 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 843 CG6674-RA 83..781 717..19 3495 100 Minus
CG6674-RB 786 CG6674-RB 389..724 354..19 1680 100 Minus
CG6674-RB 786 CG6674-RB 83..391 717..409 1545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9971213..9971604 19..410 1960 100 Plus
3L 28110227 3L 9971662..9971972 407..717 1555 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:45:42 has no hits.

BO06888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:42 Download gff for BO06888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:48 Download gff for BO06888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:57 Download gff for BO06888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 11..724 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:48 Download gff for BO06888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 11..724 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:48 Download gff for BO06888.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9971207..9971602 11..408 98 <- Plus
3L 9971664..9971978 409..724 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:57 Download gff for BO06888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9964307..9964702 11..408 98 <- Plus
arm_3L 9964764..9965078 409..724 99   Plus

BO06888.5prime Sequence

731 bp (730 high quality bases) assembled on 2005-12-03

> BO06888.5prime
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATGCAAGCTTTCTAGACC

BO06888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-PA 702 CG6674-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 843 CG6674-RA 83..781 17..715 3495 100 Plus
CG6674-RB 786 CG6674-RB 389..724 380..715 1680 100 Plus
CG6674-RB 786 CG6674-RB 83..391 17..325 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9971213..9971604 715..324 1960 100 Minus
3L 28110227 3L 9971662..9971972 327..17 1555 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:08:02 has no hits.

BO06888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:44 Download gff for BO06888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:50 Download gff for BO06888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:23 Download gff for BO06888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 10..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:14 Download gff for BO06888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 10..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:14 Download gff for BO06888.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9971207..9971602 326..723 98 <- Minus
3L 9971664..9971978 10..325 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:23 Download gff for BO06888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9964307..9964702 326..723 98 <- Minus
arm_3L 9964764..9965078 10..325 99   Minus

BO06888.complete Sequence

733 bp (733 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630583

> BO06888.complete
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATGCAAGCTTTCTAGACCAT

BO06888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 702 CG6674-PA 1..699 17..715 3495 100 Plus
CG6674-RB 645 CG6674-PB 307..642 380..715 1680 100 Plus
CG6674-RB 645 CG6674-PB 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 843 CG6674-RA 83..781 17..715 3495 100 Plus
CG6674-RB 786 CG6674-RB 389..724 380..715 1680 100 Plus
CG6674-RB 786 CG6674-RB 83..391 17..325 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9971213..9971604 715..324 1960 100 Minus
3L 28110227 3L 9971662..9971972 327..17 1555 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:36:58 has no hits.

BO06888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:20 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:19 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 73..783 10..723 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:06 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 83..781 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:20 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 73..783 10..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:10 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 83..781 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:10 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9971664..9971972 17..325 100   Minus
3L 9971211..9971602 326..717 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:06 Download gff for BO06888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9964311..9964702 326..717 99 <- Minus
arm_3L 9964764..9965072 17..325 100   Minus

BO06888.pep Sequence

Translation from 16 to 733

> BO06888.pep
MQEFSAKRDALFACLDDASKELRGTALDQSKAKAFSINALDRGNKSGNES
GQVMNYRQGRSIVTGLDAEDGRLRRMRGKESIFKKPELPIGRCLKPRKTP
DYQVNPHKWKKYSLSDVDISEQSNSAAALSFLRQMDAQREAEGVDNESPP
TDGKIEFKRTSKLSRKLKSLKQQEVDDVELDKPQLRGSKLVMPEYVIGQK
PHKPKKCKTKSEQSRAAGKLQLSHLAEEDEQDDASFLDH

BO06888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-PA 233 CG6674-PA 1..233 1..233 1192 100 Plus
CG6674-PB 214 CG6674-PB 1..214 1..233 1058 91.8 Plus