Clone Sequence Records
BO06890.3prime Sequence
854 bp (853 high quality bases) assembled on 2005-12-03
> BO06890.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCGGTTTCGCTTTTGTGTCTTCATCAT
CGCCCTCGGTCTCCGTCTCGCTACTACTACTACTACTGCTGGTGGGATAG
AAGTCGCGAAGATCCCTAGGCTTATCCCGCTCCTGCTGTTCCTTCTCCAG
GTACTCATTCTGCACCTTAACAATCTCATCGCTGCTCTTGCAGGCTGCAT
AGGCATTGAGAAGCTTGTCGTTTAGCTCCAGAAAGGCATGACCCCATGAG
AACTTGCCCAGAAACCAGCGAGCCTCTTCCGTGAATCCACAGATGTATAG
AGTGGCGGCTATGGCCTCCACGCAGCTGAGCTTGCAGGGCTTTCCGTAGT
TGATGGGATTGGCGGCCACCAAGAAGGGCAGCAGTCGCGGATGTGGGCTG
CGCATCCTTCCAAAGGGCGTCTCGTCCAGCTTGGCCCACGAGCAGTCGAT
CACGGCCACGCCCGAAGAGGCCACCACATCGCGATCCAGCGGACTTACAC
ACAACTGGCCAACGGGCGAGAGGACAAGGCCAGGAAACTTCTGACCCAGT
CGAAGATTTGAAATGAGTCCTAGGCGTGCCAGTTTCCTGCCCGAACACTT
CTTTGGATCGCAGTGGTTGAGGTCCCACATGGCCACCGCAAACTCCGGCG
GCTGGCCGAGATCATTTTGGGCTCCATCTCCCGAGGATTCCGAGTCGGAA
CTTTCATTTTCGCTGCTACTGCTGCTGGCCAGCTCGTTGGCCTGCTGAGC
AAAGCTGCGGGCACAATTGTGATTCGCTTTGACATTGCGGTAGGGTCCTC
CTCCACCCTTCTTTCCTTTGCCGCGGTTCCGTCCACTCATGTCGACTGAT
AACT
BO06890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-PA | 825 | CG4338-RA | 1..822 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 953 | CG4338-RA | 93..914 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15275614..15276435 | 840..19 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:48:12 has no hits.
BO06890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:46 Download gff for
BO06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..825 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:53 Download gff for
BO06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..825 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:02 Download gff for
BO06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..917 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:04 Download gff for
BO06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..917 | 15..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:04 Download gff for
BO06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15275610..15276438 | 15..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:02 Download gff for
BO06890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11101332..11102160 | 15..848 | 99 | | Minus |
BO06890.5prime Sequence
831 bp (812 high quality bases) assembled on 2005-12-03
> BO06890.5prime
GAAGTTATCAGTCGACATGAGTGGACGGAACCGCGGCAAAGGAAAGAAGG
GTGGAGGAGGACCCTACCGCAATGTCAAAGCGAATCACAATTGTGCCCGC
AGCTTTGCTCAGCAGGCCAACGAGCTGGCCAGCAGCAGTAGCAGCGAAAA
TGAAAGTTCCGACTCGGAATCCTCGGGAGATGGAGCCCAAAATGATCTCG
GCCAGCCGCCGGAGTTTGCGGTGGCCATGTGGGACCTCAACCACTGCGAT
CCAAAGAAGTGTTCGGGCAGGAAACTGGCACGCCTAGGACTCATTTCAAA
TCTTCGACTGGGTCAGAAGTTTCCTGGCCTTGTCCTCTCGCCCGTTGGCC
AGTTGTGTGTAAGTCCGCTGGATCGCGATGTGGTGGCCTCTTCGGGCGTG
GCCGTGATCGACTGCTCGTGGGCCAAGCTGGACGAGACGCCCTTTGGAAG
GATGCGCAGCCCACATCCGCGACTGCTGCCCTTCTTGGTGGCCGCCAATC
CCATCAACTACGGAAAGCCCTGCAAGCTCAGCTGCGTGGAGGCCATAGCC
GCCACTCTATACATCTGTGGATTCACGGAAGAGGCTCGCTGGTTTCTGGG
CAAGTTCTCATGGGGTCATGCCTTTCTGGAGCTAAACGACAAGCTTCTCA
ATGCCTATGCAGCCTGCAAGAGCAGCGATGAGATTGTTAAGGTGCAGAAT
GAGTACCTGGAGAAGGAACAGCAGGAGCGGGATAAGCCTAGGGATCTTCG
CGACTTCTATCCCACCAGCAGTAGTAGTAGTAGTAGCGAGACGGAGACCG
AGGGCGATGATGAAGACACAAAAGCGAAAAC
BO06890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-PA | 825 | CG4338-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 953 | CG4338-RA | 93..905 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15275614..15276426 | 17..829 | 4065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:51:58 has no hits.
BO06890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:47 Download gff for
BO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..814 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:39:54 Download gff for
BO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..814 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:00 Download gff for
BO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..906 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:24 Download gff for
BO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..906 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:24 Download gff for
BO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15275610..15276427 | 9..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:00 Download gff for
BO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11101332..11102149 | 9..831 | 99 | | Plus |
BO06890.complete Sequence
856 bp (856 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630584
> BO06890.complete
GAAGTTATCAGTCGACATGAGTGGACGGAACCGCGGCAAAGGAAAGAAGG
GTGGAGGAGGACCCTACCGCAATGTCAAAGCGAATCACAATTGTGCCCGC
AGCTTTGCTCAGCAGGCCAACGAGCTGGCCAGCAGCAGTAGCAGCGAAAA
TGAAAGTTCCGACTCGGAATCCTCGGGAGATGGAGCCCAAAATGATCTCG
GCCAGCCGCCGGAGTTTGCGGTGGCCATGTGGGACCTCAACCACTGCGAT
CCAAAGAAGTGTTCGGGCAGGAAACTGGCACGCCTAGGACTCATTTCAAA
TCTTCGACTGGGTCAGAAGTTTCCTGGCCTTGTCCTCTCGCCCGTTGGCC
AGTTGTGTGTAAGTCCGCTGGATCGCGATGTGGTGGCCTCTTCGGGCGTG
GCCGTGATCGACTGCTCGTGGGCCAAGCTGGACGAGACGCCCTTTGGAAG
GATGCGCAGCCCACATCCGCGACTGCTGCCCTTCTTGGTGGCCGCCAATC
CCATCAACTACGGAAAGCCCTGCAAGCTCAGCTGCGTGGAGGCCATAGCC
GCCACTCTATACATCTGTGGATTCACGGAAGAGGCTCGCTGGTTTCTGGG
CAAGTTCTCATGGGGTCATGCCTTTCTGGAGCTAAACGACAAGCTTCTCA
ATGCCTATGCAGCCTGCAAGAGCAGCGATGAGATTGTTAAGGTGCAGAAT
GAGTACCTGGAGAAGGAACAGCAGGAGCGGGATAAGCCTAGGGATCTTCG
CGACTTCTATCCCACCAGCAGTAGTAGTAGTAGTAGCGAGACGGAGACCG
AGGGCGATGATGAAGACACAAAAGCGAAACCGAAGAACGCAAGCTTTCTA
GACCAT
BO06890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 825 | CG4338-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 953 | CG4338-RA | 93..914 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15275614..15276435 | 17..838 | 4110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:05:41 has no hits.
BO06890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:21 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 1..825 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:22 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 75..903 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:28 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 93..914 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:22 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 75..903 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:59 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 93..914 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:59 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15275614..15276435 | 17..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:28 Download gff for
BO06890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11101336..11102157 | 17..840 | 99 | | Plus |
BO06890.pep Sequence
Translation from 16 to 856
> BO06890.pep
MSGRNRGKGKKGGGGPYRNVKANHNCARSFAQQANELASSSSSENESSDS
ESSGDGAQNDLGQPPEFAVAMWDLNHCDPKKCSGRKLARLGLISNLRLGQ
KFPGLVLSPVGQLCVSPLDRDVVASSGVAVIDCSWAKLDETPFGRMRSPH
PRLLPFLVAANPINYGKPCKLSCVEAIAATLYICGFTEEARWFLGKFSWG
HAFLELNDKLLNAYAACKSSDEIVKVQNEYLEKEQQERDKPRDLRDFYPT
SSSSSSSETETEGDDEDTKAKPKNASFLDH
BO06890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-PA | 274 | CG4338-PA | 1..274 | 1..274 | 1452 | 100 | Plus |
