Clone Sequence Records
BO06893.5prime Sequence
779 bp (752 high quality bases) assembled on 2005-12-03
> BO06893.5prime
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGGCAAGCTTTCTAGACC
BO06893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2471-PA | 750 | CG2471-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RC | 1766 | CG74-RC | 220..966 | 17..763 | 3735 | 100 | Plus |
Sclp-RA | 1102 | CG2471-RA | 220..966 | 17..763 | 3735 | 100 | Plus |
Sclp-RB | 770 | CG2471-RB | 173..634 | 302..763 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11924158..11924443 | 302..17 | 1430 | 100 | Minus |
X | 23542271 | X | 11921998..11922168 | 614..444 | 855 | 100 | Minus |
X | 23542271 | X | 11921783..11921932 | 763..614 | 750 | 100 | Minus |
X | 23542271 | X | 11922230..11922374 | 446..302 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:12:32 has no hits.
BO06893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:53 Download gff for
BO06893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:02 Download gff for
BO06893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:38 Download gff for
BO06893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..969 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:44:17 Download gff for
BO06893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..969 | 17..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:44:17 Download gff for
BO06893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11921779..11921931 | 615..767 | 98 | <- | Minus |
X | 11921998..11922165 | 447..614 | 100 | <- | Minus |
X | 11922230..11922373 | 303..446 | 100 | <- | Minus |
X | 11924158..11924443 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:38 Download gff for
BO06893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11818191..11818476 | 17..302 | 100 | | Minus |
arm_X | 11815812..11815964 | 615..767 | 98 | <- | Minus |
arm_X | 11816031..11816198 | 447..614 | 100 | <- | Minus |
arm_X | 11816263..11816406 | 303..446 | 100 | <- | Minus |
BO06893.3prime Sequence
779 bp (778 high quality bases) assembled on 2005-12-03
> BO06893.3prime
ATGGTCTAGAAAGCTTGCCCAGTCGTCTTCGACATCCTTGGAGATCTCAA
GGTGGAAGGGGGTCTTGAAGCTCTGCAGCTTTCGTCGGCAGTTTCTGCTC
AGCGGATTATTCCGAAGATCAACGAGGGCCAAATTGTCACTGGTAATTGC
CTCATCGGTATCAATTTCCAAAATGGCATTGTTCTGGGCATCCAGACTGG
CAAGACTCTGAAGCTTAAAGACTACTTGTGGCAAAACGATAAATGAATTG
TTCGAGATATTCAGCTTGGTTAGCGCAGACAAGCTGGCGAATTCTTCTGG
CAGCCTCGACAGTTTGTTGTGTGACAGATTAAGATCTGTGATGGTACTAA
ACTTTTGCGAAAACTTGGGCGAAACGCTTTTGAGCACATTGCCACTGAGA
TTGCAGGTGATCAACTCTGTGTTTCGCATAAGATGATATACCGCATCTGG
TATTTGCATCAGTTCACAACTTGAAAGATCCAGTTTGTGGTTCTCCTTGG
CGTCTTCGCAACGCTGAACCACCCGGATAACTCCTTGTCCAGCGATCGGG
GGGCAGGTAACGATTCCGCCGATTCTCGCTATATGCGGCGGAATACTCGG
ATCGTCCGATAGTCCGGACTCCTCGCTGGGATCCTCACTGGATATGTTCG
TGTTCCGGTTGTCGTTGCCGTCGTTGGGATCGTTGTTGCCATTATTACCA
CCATTATTACCACCATTATTACCACCGTTCGGGATGTTTGTTATGTCGTT
GCCAAAAGGCCGCATGTCGACTGATAACT
BO06893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2471-PA | 750 | CG2471-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RC | 1766 | CG74-RC | 220..966 | 765..19 | 3735 | 100 | Minus |
Sclp-RA | 1102 | CG2471-RA | 220..966 | 765..19 | 3735 | 100 | Minus |
Sclp-RB | 770 | CG2471-RB | 173..634 | 480..19 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11924158..11924443 | 480..765 | 1430 | 100 | Plus |
X | 23542271 | X | 11921998..11922168 | 168..338 | 855 | 100 | Plus |
X | 23542271 | X | 11921783..11921932 | 19..168 | 750 | 100 | Plus |
X | 23542271 | X | 11922230..11922374 | 336..480 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:55:52 has no hits.
BO06893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:52 Download gff for
BO06893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:00 Download gff for
BO06893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:03 Download gff for
BO06893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..969 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:07 Download gff for
BO06893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..969 | 15..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:07 Download gff for
BO06893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11921779..11921931 | 15..167 | 98 | <- | Plus |
X | 11921998..11922165 | 168..335 | 100 | <- | Plus |
X | 11922230..11922373 | 336..479 | 100 | <- | Plus |
X | 11924158..11924443 | 480..765 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:03 Download gff for
BO06893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11816031..11816198 | 168..335 | 100 | <- | Plus |
arm_X | 11815812..11815964 | 15..167 | 98 | <- | Plus |
arm_X | 11816263..11816406 | 336..479 | 100 | <- | Plus |
arm_X | 11818191..11818476 | 480..765 | 100 | | Plus |
BO06893.complete Sequence
781 bp (781 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630586
> BO06893.complete
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGGCAAGCTTTCTAGACCAT
BO06893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RC | 1020 | CG2471-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
Sclp-RA | 750 | CG2471-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Sclp-RB | 528 | CG2471-PB | 64..525 | 302..763 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RC | 1766 | CG74-RC | 220..966 | 17..763 | 3735 | 100 | Plus |
Sclp-RA | 1102 | CG2471-RA | 220..966 | 17..763 | 3735 | 100 | Plus |
Sclp-RB | 770 | CG2471-RB | 173..634 | 302..763 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11924158..11924443 | 302..17 | 1430 | 100 | Minus |
X | 23542271 | X | 11921998..11922168 | 614..444 | 855 | 100 | Minus |
X | 23542271 | X | 11921783..11921932 | 763..614 | 750 | 100 | Minus |
X | 23542271 | X | 11922230..11922374 | 446..302 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:56:49 has no hits.
BO06893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:13 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:09 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..969 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:38 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..966 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:13 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..969 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:27 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..966 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:27 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11921781..11921931 | 615..765 | 98 | <- | Minus |
X | 11922230..11922373 | 303..446 | 100 | <- | Minus |
X | 11921998..11922165 | 447..614 | 100 | <- | Minus |
X | 11924158..11924443 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:38 Download gff for
BO06893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11816263..11816406 | 303..446 | 100 | <- | Minus |
arm_X | 11818191..11818476 | 17..302 | 100 | | Minus |
arm_X | 11815814..11815964 | 615..765 | 98 | <- | Minus |
arm_X | 11816031..11816198 | 447..614 | 100 | <- | Minus |
BO06893.pep Sequence
Translation from 16 to 781
> BO06893.pep
MRPFGNDITNIPNGGNNGGNNGGNNGNNDPNDGNDNRNTNISSEDPSEES
GLSDDPSIPPHIARIGGIVTCPPIAGQGVIRVVQRCEDAKENHKLDLSSC
ELMQIPDAVYHLMRNTELITCNLSGNVLKSVSPKFSQKFSTITDLNLSHN
KLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQSLASLDAQNNAILE
IDTDEAITSDNLALVDLRNNPLSRNCRRKLQSFKTPFHLEISKDVEDDWA
SFLDH
BO06893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-PA | 249 | CG2471-PA | 1..249 | 1..249 | 1299 | 100 | Plus |
Sclp-PC | 339 | CG2471-PC | 1..249 | 1..249 | 1299 | 100 | Plus |
Sclp-PB | 175 | CG2471-PB | 5..175 | 79..249 | 828 | 95.3 | Plus |
f-cup-PE | 620 | CG9611-PE | 446..572 | 93..222 | 192 | 38.2 | Plus |
f-cup-PB | 650 | CG9611-PB | 476..602 | 93..222 | 192 | 38.2 | Plus |