Clone BO06893 Report

Search the DGRC for BO06893

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptSclp-RA
Protein status:BO06893.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO06893.5prime Sequence

779 bp (752 high quality bases) assembled on 2005-12-03

> BO06893.5prime
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGGCAAGCTTTCTAGACC

BO06893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2471-PA 750 CG2471-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RC 1766 CG74-RC 220..966 17..763 3735 100 Plus
Sclp-RA 1102 CG2471-RA 220..966 17..763 3735 100 Plus
Sclp-RB 770 CG2471-RB 173..634 302..763 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11924158..11924443 302..17 1430 100 Minus
X 23542271 X 11921998..11922168 614..444 855 100 Minus
X 23542271 X 11921783..11921932 763..614 750 100 Minus
X 23542271 X 11922230..11922374 446..302 725 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:12:32 has no hits.

BO06893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:53 Download gff for BO06893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:02 Download gff for BO06893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:38 Download gff for BO06893.5prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..969 17..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:44:17 Download gff for BO06893.5prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..969 17..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:44:17 Download gff for BO06893.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11921779..11921931 615..767 98 <- Minus
X 11921998..11922165 447..614 100 <- Minus
X 11922230..11922373 303..446 100 <- Minus
X 11924158..11924443 17..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:38 Download gff for BO06893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11818191..11818476 17..302 100   Minus
arm_X 11815812..11815964 615..767 98 <- Minus
arm_X 11816031..11816198 447..614 100 <- Minus
arm_X 11816263..11816406 303..446 100 <- Minus

BO06893.3prime Sequence

779 bp (778 high quality bases) assembled on 2005-12-03

> BO06893.3prime
ATGGTCTAGAAAGCTTGCCCAGTCGTCTTCGACATCCTTGGAGATCTCAA
GGTGGAAGGGGGTCTTGAAGCTCTGCAGCTTTCGTCGGCAGTTTCTGCTC
AGCGGATTATTCCGAAGATCAACGAGGGCCAAATTGTCACTGGTAATTGC
CTCATCGGTATCAATTTCCAAAATGGCATTGTTCTGGGCATCCAGACTGG
CAAGACTCTGAAGCTTAAAGACTACTTGTGGCAAAACGATAAATGAATTG
TTCGAGATATTCAGCTTGGTTAGCGCAGACAAGCTGGCGAATTCTTCTGG
CAGCCTCGACAGTTTGTTGTGTGACAGATTAAGATCTGTGATGGTACTAA
ACTTTTGCGAAAACTTGGGCGAAACGCTTTTGAGCACATTGCCACTGAGA
TTGCAGGTGATCAACTCTGTGTTTCGCATAAGATGATATACCGCATCTGG
TATTTGCATCAGTTCACAACTTGAAAGATCCAGTTTGTGGTTCTCCTTGG
CGTCTTCGCAACGCTGAACCACCCGGATAACTCCTTGTCCAGCGATCGGG
GGGCAGGTAACGATTCCGCCGATTCTCGCTATATGCGGCGGAATACTCGG
ATCGTCCGATAGTCCGGACTCCTCGCTGGGATCCTCACTGGATATGTTCG
TGTTCCGGTTGTCGTTGCCGTCGTTGGGATCGTTGTTGCCATTATTACCA
CCATTATTACCACCATTATTACCACCGTTCGGGATGTTTGTTATGTCGTT
GCCAAAAGGCCGCATGTCGACTGATAACT

BO06893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2471-PA 750 CG2471-RA 1..747 765..19 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RC 1766 CG74-RC 220..966 765..19 3735 100 Minus
Sclp-RA 1102 CG2471-RA 220..966 765..19 3735 100 Minus
Sclp-RB 770 CG2471-RB 173..634 480..19 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11924158..11924443 480..765 1430 100 Plus
X 23542271 X 11921998..11922168 168..338 855 100 Plus
X 23542271 X 11921783..11921932 19..168 750 100 Plus
X 23542271 X 11922230..11922374 336..480 725 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:55:52 has no hits.

BO06893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:52 Download gff for BO06893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 15..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:00 Download gff for BO06893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 15..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:03 Download gff for BO06893.3prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..969 15..765 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:07 Download gff for BO06893.3prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..969 15..765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:07 Download gff for BO06893.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11921779..11921931 15..167 98 <- Plus
X 11921998..11922165 168..335 100 <- Plus
X 11922230..11922373 336..479 100 <- Plus
X 11924158..11924443 480..765 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:03 Download gff for BO06893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11816031..11816198 168..335 100 <- Plus
arm_X 11815812..11815964 15..167 98 <- Plus
arm_X 11816263..11816406 336..479 100 <- Plus
arm_X 11818191..11818476 480..765 100   Plus

BO06893.complete Sequence

781 bp (781 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630586

> BO06893.complete
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGGCAAGCTTTCTAGACCAT

BO06893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RC 1020 CG2471-PC 1..747 17..763 3735 100 Plus
Sclp-RA 750 CG2471-PA 1..747 17..763 3735 100 Plus
Sclp-RB 528 CG2471-PB 64..525 302..763 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RC 1766 CG74-RC 220..966 17..763 3735 100 Plus
Sclp-RA 1102 CG2471-RA 220..966 17..763 3735 100 Plus
Sclp-RB 770 CG2471-RB 173..634 302..763 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11924158..11924443 302..17 1430 100 Minus
X 23542271 X 11921998..11922168 614..444 855 100 Minus
X 23542271 X 11921783..11921932 763..614 750 100 Minus
X 23542271 X 11922230..11922374 446..302 725 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:56:49 has no hits.

BO06893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:13 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:09 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..969 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:38 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..966 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:13 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..969 17..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:27 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..966 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:27 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
X 11921781..11921931 615..765 98 <- Minus
X 11922230..11922373 303..446 100 <- Minus
X 11921998..11922165 447..614 100 <- Minus
X 11924158..11924443 17..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:38 Download gff for BO06893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11816263..11816406 303..446 100 <- Minus
arm_X 11818191..11818476 17..302 100   Minus
arm_X 11815814..11815964 615..765 98 <- Minus
arm_X 11816031..11816198 447..614 100 <- Minus

BO06893.pep Sequence

Translation from 16 to 781

> BO06893.pep
MRPFGNDITNIPNGGNNGGNNGGNNGNNDPNDGNDNRNTNISSEDPSEES
GLSDDPSIPPHIARIGGIVTCPPIAGQGVIRVVQRCEDAKENHKLDLSSC
ELMQIPDAVYHLMRNTELITCNLSGNVLKSVSPKFSQKFSTITDLNLSHN
KLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQSLASLDAQNNAILE
IDTDEAITSDNLALVDLRNNPLSRNCRRKLQSFKTPFHLEISKDVEDDWA
SFLDH

BO06893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-PA 249 CG2471-PA 1..249 1..249 1299 100 Plus
Sclp-PC 339 CG2471-PC 1..249 1..249 1299 100 Plus
Sclp-PB 175 CG2471-PB 5..175 79..249 828 95.3 Plus
f-cup-PE 620 CG9611-PE 446..572 93..222 192 38.2 Plus
f-cup-PB 650 CG9611-PB 476..602 93..222 192 38.2 Plus