Clone BO06894 Report

Search the DGRC for BO06894

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG10672-RA
Protein status:BO06894.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO06894.3prime Sequence

912 bp (834 high quality bases) assembled on 2005-12-03

> BO06894.3prime
ATGGTCTAGAAAGCTTGCCAAACGAGCTGTCATTCCACCGCCCGCCACAA
TGGACTCTCCGGTAATGTAGCCCGCATCCTCGGAGACCAAAAAGGAGACC
ACGCCAGCCATCTCCTCGCTGGTGCCCAGACGACCCATGGGTATTTTGCT
CAAAGCCGCTTCATTCGCCGACTCATTCTCGTACAGTGCTTTCGAGAACT
TTGTCCTGATGACTCCTGGAGCCAGGCAGTTGACGCGAATGCCCTCGGGC
GCCAGATCCTTGGCGGCTGCCTTGGTCAAGCCAATCAGCGCGGTCTTGCT
GACGGAATAGGCTCCCAGTAGCTCAAAGGCATCATAGCCAGCAATGGAGG
AGACGAAAACGATGCTGGAGTTCTTTTGCTGGCGCAGGAGAGGCAGTGCC
TCCTTGGCCAGCAGATAGGAACTCTTCACGTTCACATCGAAGATCTTGTC
CCACACCTTCTCGTCGCACTCGAGGACACCGCCGACCGCAGGATTGGTGG
CTGCATTGCTGACCAGAATGTTAAGCTTGCCAAACTTGCTGATGGTCTCC
TCGAAGAGCTGTTTGCGATCCTCGGGTTCGCTGACATGGCACTTCAGACC
GTGGACATTCAAGTTCAGTTTGCGCAGCTCCGCCAGAGCAGAGTCCACAT
TCTTTTGCTTGCGACTGCTGATGACCACTGCGGCGCCATCTTCGGCCAGC
CTTTTGGCAATCGCGAAACCAATGCCATCGGTGGAGGCGGTGACCACGGC
TACTTTTCCTGCCAAACGCTTCATCGTGCCGGCTGTCGAACTTTGACTAC
TGCTGGACAAGCGTTTGTGGCATTGATTGAGATTAGGGCCAACAAGTTTT
CGGCTGTAATTGTTGCTGTTTTGATCGAAACTTGAACTTTGACCACTTCC
ACTCACAGCGCT

BO06894.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 954 CG10672-RA 58..951 912..19 4320 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1082 CG10672-RA 154..1047 912..19 4380 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 322..725 1960 99 Plus
3L 28110227 3L 5140475..5140779 19..323 1495 99.3 Plus
3L 28110227 3L 5141306..5141493 725..912 940 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:39:23 has no hits.

BO06894.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:54 Download gff for BO06894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 58..954 15..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:03 Download gff for BO06894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 58..954 15..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:59 Download gff for BO06894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 154..1058 7..912 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:35 Download gff for BO06894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 154..1058 7..912 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:35 Download gff for BO06894.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5140464..5140777 7..321 97 <- Plus
3L 5140840..5141242 322..724 99 <- Plus
3L 5141306..5141493 725..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:59 Download gff for BO06894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133564..5133877 7..321 97 <- Plus
arm_3L 5133940..5134342 322..724 99 <- Plus
arm_3L 5134406..5134593 725..912 100   Plus

BO06894.5prime Sequence

923 bp (776 high quality bases) assembled on 2005-12-03

> BO06894.5prime
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAATACCCATGG
GTCGTCTGGGCCCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGTCT
CCGAGGATGCGGGCTACATTACG

BO06894.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 954 CG10672-RA 1..825 17..841 4025 99.5 Plus
CG10672-PA 954 CG10672-RA 853..908 867..922 280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1082 CG10672-RA 97..1004 17..922 4415 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 664..261 1960 99 Minus
3L 28110227 3L 5141306..5141550 261..17 1225 100 Minus
3L 28110227 3L 5140518..5140779 922..663 1195 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 23:46:11 has no hits.

BO06894.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:55 Download gff for BO06894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 1..908 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:04 Download gff for BO06894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 1..908 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:02 Download gff for BO06894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 97..1004 17..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:54 Download gff for BO06894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 97..1004 17..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:54 Download gff for BO06894.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5140516..5140777 665..923 98 <- Minus
3L 5140840..5141242 262..664 99 <- Minus
3L 5141306..5141550 17..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:02 Download gff for BO06894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133616..5133877 665..923 98 <- Minus
arm_3L 5133940..5134342 262..664 99 <- Minus
arm_3L 5134406..5134650 17..261 100   Minus

BO06894.complete Sequence

985 bp (985 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630587

> BO06894.complete
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATG
GGTCGTCTGGGCACCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGT
CTCCGAGGATGCGGGCTACATTACCGGAGAGTCCATTGTGGCGGGCGGTG
GAATGACAGCTCGTTTGGCAAGCTTTCTAGACCAT

BO06894.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 954 CG10672-PA 1..951 17..967 4665 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1082 CG10672-RA 97..1047 17..967 4665 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 664..261 1960 99 Minus
3L 28110227 3L 5140475..5140779 967..663 1495 99.3 Minus
3L 28110227 3L 5141306..5141550 261..17 1225 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:39:18 has no hits.

BO06894.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:55 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:48 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 105..1066 17..979 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:13 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 102..1047 22..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:55 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 105..1066 17..979 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:03 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 102..1047 22..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:03 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5140473..5140777 665..969 98 <- Minus
3L 5140840..5141242 262..664 99 <- Minus
3L 5141306..5141545 22..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:13 Download gff for BO06894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133573..5133877 665..969 98 <- Minus
arm_3L 5133940..5134342 262..664 99 <- Minus
arm_3L 5134406..5134645 22..261 100   Minus

BO06894.pep Sequence

Translation from 16 to 985

> BO06894.pep
MLHLSKQLVVRAPKIRLNASAVSGSGQSSSFDQNSNNYSRKLVGPNLNQC
HKRLSSSSQSSTAGTMKRLAGKVAVVTASTDGIGFAIAKRLAEDGAAVVI
SSRKQKNVDSALAELRKLNLNVHGLKCHVSEPEDRKQLFEETISKFGKLN
ILVSNAATNPAVGGVLECDEKVWDKIFDVNVKSSYLLAKEALPLLRQQKN
SSIVFVSSIAGYDAFELLGAYSVSKTALIGLTKAAAKDLAPEGIRVNCLA
PGVIRTKFSKALYENESANEAALSKIPMGRLGTSEEMAGVVSFLVSEDAG
YITGESIVAGGGMTARLASFLDH

BO06894.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 317 CG10672-PA 1..317 1..317 1560 100 Plus
CG31546-PA 264 CG31546-PA 12..257 70..312 329 33.7 Plus
CG3699-PA 251 CG3699-PA 3..244 69..312 328 33.1 Plus
CG3603-PB 249 CG3603-PB 6..248 69..313 311 32.8 Plus
CG3603-PA 249 CG3603-PA 6..248 69..313 311 32.8 Plus