Clone Sequence Records
BO06894.3prime Sequence
912 bp (834 high quality bases) assembled on 2005-12-03
> BO06894.3prime
ATGGTCTAGAAAGCTTGCCAAACGAGCTGTCATTCCACCGCCCGCCACAA
TGGACTCTCCGGTAATGTAGCCCGCATCCTCGGAGACCAAAAAGGAGACC
ACGCCAGCCATCTCCTCGCTGGTGCCCAGACGACCCATGGGTATTTTGCT
CAAAGCCGCTTCATTCGCCGACTCATTCTCGTACAGTGCTTTCGAGAACT
TTGTCCTGATGACTCCTGGAGCCAGGCAGTTGACGCGAATGCCCTCGGGC
GCCAGATCCTTGGCGGCTGCCTTGGTCAAGCCAATCAGCGCGGTCTTGCT
GACGGAATAGGCTCCCAGTAGCTCAAAGGCATCATAGCCAGCAATGGAGG
AGACGAAAACGATGCTGGAGTTCTTTTGCTGGCGCAGGAGAGGCAGTGCC
TCCTTGGCCAGCAGATAGGAACTCTTCACGTTCACATCGAAGATCTTGTC
CCACACCTTCTCGTCGCACTCGAGGACACCGCCGACCGCAGGATTGGTGG
CTGCATTGCTGACCAGAATGTTAAGCTTGCCAAACTTGCTGATGGTCTCC
TCGAAGAGCTGTTTGCGATCCTCGGGTTCGCTGACATGGCACTTCAGACC
GTGGACATTCAAGTTCAGTTTGCGCAGCTCCGCCAGAGCAGAGTCCACAT
TCTTTTGCTTGCGACTGCTGATGACCACTGCGGCGCCATCTTCGGCCAGC
CTTTTGGCAATCGCGAAACCAATGCCATCGGTGGAGGCGGTGACCACGGC
TACTTTTCCTGCCAAACGCTTCATCGTGCCGGCTGTCGAACTTTGACTAC
TGCTGGACAAGCGTTTGTGGCATTGATTGAGATTAGGGCCAACAAGTTTT
CGGCTGTAATTGTTGCTGTTTTGATCGAAACTTGAACTTTGACCACTTCC
ACTCACAGCGCT
BO06894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-PA | 954 | CG10672-RA | 58..951 | 912..19 | 4320 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 1082 | CG10672-RA | 154..1047 | 912..19 | 4380 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5140840..5141243 | 322..725 | 1960 | 99 | Plus |
3L | 28110227 | 3L | 5140475..5140779 | 19..323 | 1495 | 99.3 | Plus |
3L | 28110227 | 3L | 5141306..5141493 | 725..912 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:39:23 has no hits.
BO06894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:54 Download gff for
BO06894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 58..954 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:03 Download gff for
BO06894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 58..954 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:59 Download gff for
BO06894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 154..1058 | 7..912 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:35 Download gff for
BO06894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 154..1058 | 7..912 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:35 Download gff for
BO06894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5140464..5140777 | 7..321 | 97 | <- | Plus |
3L | 5140840..5141242 | 322..724 | 99 | <- | Plus |
3L | 5141306..5141493 | 725..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:59 Download gff for
BO06894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5133564..5133877 | 7..321 | 97 | <- | Plus |
arm_3L | 5133940..5134342 | 322..724 | 99 | <- | Plus |
arm_3L | 5134406..5134593 | 725..912 | 100 | | Plus |
BO06894.5prime Sequence
923 bp (776 high quality bases) assembled on 2005-12-03
> BO06894.5prime
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAATACCCATGG
GTCGTCTGGGCCCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGTCT
CCGAGGATGCGGGCTACATTACG
BO06894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-PA | 954 | CG10672-RA | 1..825 | 17..841 | 4025 | 99.5 | Plus |
CG10672-PA | 954 | CG10672-RA | 853..908 | 867..922 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 1082 | CG10672-RA | 97..1004 | 17..922 | 4415 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5140840..5141243 | 664..261 | 1960 | 99 | Minus |
3L | 28110227 | 3L | 5141306..5141550 | 261..17 | 1225 | 100 | Minus |
3L | 28110227 | 3L | 5140518..5140779 | 922..663 | 1195 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:46:11 has no hits.
BO06894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:55 Download gff for
BO06894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 1..908 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:04 Download gff for
BO06894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 1..908 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:02 Download gff for
BO06894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 97..1004 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:54 Download gff for
BO06894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 97..1004 | 17..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:54 Download gff for
BO06894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5140516..5140777 | 665..923 | 98 | <- | Minus |
3L | 5140840..5141242 | 262..664 | 99 | <- | Minus |
3L | 5141306..5141550 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:02 Download gff for
BO06894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5133616..5133877 | 665..923 | 98 | <- | Minus |
arm_3L | 5133940..5134342 | 262..664 | 99 | <- | Minus |
arm_3L | 5134406..5134650 | 17..261 | 100 | | Minus |
BO06894.complete Sequence
985 bp (985 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630587
> BO06894.complete
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATG
GGTCGTCTGGGCACCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGT
CTCCGAGGATGCGGGCTACATTACCGGAGAGTCCATTGTGGCGGGCGGTG
GAATGACAGCTCGTTTGGCAAGCTTTCTAGACCAT
BO06894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 954 | CG10672-PA | 1..951 | 17..967 | 4665 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 1082 | CG10672-RA | 97..1047 | 17..967 | 4665 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5140840..5141243 | 664..261 | 1960 | 99 | Minus |
3L | 28110227 | 3L | 5140475..5140779 | 967..663 | 1495 | 99.3 | Minus |
3L | 28110227 | 3L | 5141306..5141550 | 261..17 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:39:18 has no hits.
BO06894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:55 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:48 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 105..1066 | 17..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:13 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 102..1047 | 22..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:55 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 105..1066 | 17..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:03 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 102..1047 | 22..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:03 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5140473..5140777 | 665..969 | 98 | <- | Minus |
3L | 5140840..5141242 | 262..664 | 99 | <- | Minus |
3L | 5141306..5141545 | 22..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:13 Download gff for
BO06894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5133573..5133877 | 665..969 | 98 | <- | Minus |
arm_3L | 5133940..5134342 | 262..664 | 99 | <- | Minus |
arm_3L | 5134406..5134645 | 22..261 | 100 | | Minus |
BO06894.pep Sequence
Translation from 16 to 985
> BO06894.pep
MLHLSKQLVVRAPKIRLNASAVSGSGQSSSFDQNSNNYSRKLVGPNLNQC
HKRLSSSSQSSTAGTMKRLAGKVAVVTASTDGIGFAIAKRLAEDGAAVVI
SSRKQKNVDSALAELRKLNLNVHGLKCHVSEPEDRKQLFEETISKFGKLN
ILVSNAATNPAVGGVLECDEKVWDKIFDVNVKSSYLLAKEALPLLRQQKN
SSIVFVSSIAGYDAFELLGAYSVSKTALIGLTKAAAKDLAPEGIRVNCLA
PGVIRTKFSKALYENESANEAALSKIPMGRLGTSEEMAGVVSFLVSEDAG
YITGESIVAGGGMTARLASFLDH
BO06894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-PA | 317 | CG10672-PA | 1..317 | 1..317 | 1560 | 100 | Plus |
CG31546-PA | 264 | CG31546-PA | 12..257 | 70..312 | 329 | 33.7 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..244 | 69..312 | 328 | 33.1 | Plus |
CG3603-PB | 249 | CG3603-PB | 6..248 | 69..313 | 311 | 32.8 | Plus |
CG3603-PA | 249 | CG3603-PA | 6..248 | 69..313 | 311 | 32.8 | Plus |