Clone Sequence Records
BO06896.5prime Sequence
818 bp (766 high quality bases) assembled on 2005-12-03
> BO06896.5prime
GAAGTTATCAGTCGACATGTTCGAGGTGTTCGATAAGCCCTTCGCCGATC
CTGTCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATC
ACGGTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAA
GCATGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGAC
AAGTCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTC
GTGCAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCA
TGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACA
AGGTGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAG
CGCCAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCAC
CTCGCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGA
TCTGCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTAC
GCCTCGTCGCAGAGCCAGAATGTGCAGGAGAGCCTCTGGTGGAAGAAGTA
CCTTACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCA
TGTACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTAT
GTCATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAAGTTCTA
CATAAAGACCTACATTCGGCCGAAAGAGGTCAAGTCCAAGGGCAAGGTCA
ACGCAAGCTTTCTAGACC
BO06896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-PA | 789 | CG16904-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG5326-PA | 834 | CG5326-RA | 392..446 | 366..420 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 980 | CG16904-RA | 23..808 | 17..802 | 3930 | 100 | Plus |
CG5326-RA | 1694 | CG5326-RA | 707..778 | 362..433 | 210 | 86.1 | Plus |
CG17821-RA | 1073 | CG17821-RA | 616..713 | 347..444 | 190 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9816100..9816670 | 802..232 | 2855 | 100 | Minus |
3R | 32079331 | 3R | 9816741..9816957 | 233..17 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 22533152..22533223 | 433..362 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 22559793..22559868 | 433..358 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:21:42 has no hits.
BO06896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:00 Download gff for
BO06896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:09 Download gff for
BO06896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:02 Download gff for
BO06896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..812 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:53 Download gff for
BO06896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..812 | 17..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:53 Download gff for
BO06896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9816096..9816669 | 233..806 | 99 | <- | Minus |
3R | 9816742..9816957 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:02 Download gff for
BO06896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5641818..5642391 | 233..806 | 99 | <- | Minus |
arm_3R | 5642464..5642679 | 17..232 | 100 | | Minus |
BO06896.3prime Sequence
818 bp (796 high quality bases) assembled on 2005-12-03
> BO06896.3prime
ATGGTCTAGAAAGCTTGCGTTGACCTTGCCCTTGGACTTGACCTCTTTCG
GCCGAATGTAGGTCTTTATGTAGAACTTGGTGAACATCAGAAACATGAAG
GCGCTGGCCGAACTTATGACATAGATGACACCCCGCGACGCCGAGCAGTT
TGGCTGGAAATAGGTGTACATGCAGTGCAGGAACATCAGGAGGAACTGCA
CCAGCTGGCCCAGGGTAAGGTACTTCTTCCACCAGAGGCTCTCCTGCACA
TTCTGGCTCTGCGACGAGGCGTAGTAGTAGCCGTACATGACGATGTGCAC
CAGAACATTGAACATGCAGATCAGGAAGACATGGCCACCAAAACCGTAGA
ATCGGATCAGCATGTGCGAGGTGAAGACCATGAAGACGTGATGGAACACA
TGGAGGAACGTGATCTGGCGCTGCTTCTTGCGCAGCACAAAGAATATGGT
GTCCATCAGGTCGAGCACCTTGTTCAGATGGTACATGTACGACAGTGTCC
TTTCCGTGGACTTTAGCTCATGATCCTGCGGCAGGACTTGCATGCAGCTC
AGGTTGTACGGCTTCTGCACGAATAACAGATGGATGCCCCACACAAAAAT
CACCGAATTGAACAGGACTTGTCCGATGTTGTAGAACTTGAGCACACCTC
GCAGCTGGAGTGCCTCATGCTTGTCCATCAGCTTCCTGCCCAGCTTGAGC
ACAAACAATAGATACACCGTGATGATGATCACCGAGGTGCGGATACTGCC
CGCCAGCGGCAGCTGGACAGGATCGGCGAAGGGCTTATCGAACACCTCGA
ACATGTCGACTGATAACT
BO06896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-PA | 789 | CG16904-RA | 1..786 | 804..19 | 3930 | 100 | Minus |
CG5326-PA | 834 | CG5326-RA | 392..446 | 455..401 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 980 | CG16904-RA | 23..808 | 804..19 | 3930 | 100 | Minus |
CG5326-RA | 1694 | CG5326-RA | 707..778 | 459..388 | 210 | 86.1 | Minus |
CG17821-RA | 1073 | CG17821-RA | 616..713 | 474..377 | 190 | 80.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9816100..9816670 | 19..589 | 2855 | 100 | Plus |
3R | 32079331 | 3R | 9816741..9816957 | 588..804 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 22533152..22533223 | 388..459 | 210 | 86.1 | Plus |
3R | 32079331 | 3R | 22559793..22559868 | 388..463 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:13:02 has no hits.
BO06896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:59 Download gff for
BO06896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:08 Download gff for
BO06896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:41 Download gff for
BO06896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..812 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:45:52 Download gff for
BO06896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..812 | 15..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:45:52 Download gff for
BO06896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9816742..9816957 | 589..804 | 100 | | Plus |
3R | 9816096..9816669 | 15..588 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:41 Download gff for
BO06896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5641818..5642391 | 15..588 | 99 | <- | Plus |
arm_3R | 5642464..5642679 | 589..804 | 100 | | Plus |
BO06896.complete Sequence
820 bp (820 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630588
> BO06896.complete
GAAGTTATCAGTCGACATGTTCGAGGTGTTCGATAAGCCCTTCGCCGATC
CTGTCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATC
ACGGTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAA
GCATGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGAC
AAGTCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTC
GTGCAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCA
TGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACA
AGGTGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAG
CGCCAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCAC
CTCGCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGA
TCTGCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTAC
GCCTCGTCGCAGAGCCAGAATGTGCAGGAGAGCCTCTGGTGGAAGAAGTA
CCTTACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCA
TGTACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTAT
GTCATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAAGTTCTA
CATAAAGACCTACATTCGGCCGAAAGAGGTCAAGTCCAAGGGCAAGGTCA
ACGCAAGCTTTCTAGACCAT
BO06896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 789 | CG16904-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG5326-RA | 834 | CG5326-PA | 388..459 | 362..433 | 210 | 86.1 | Plus |
CG5278-RA | 888 | CG5278-PA | 369..444 | 358..433 | 185 | 82.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 980 | CG16904-RA | 23..808 | 17..802 | 3930 | 100 | Plus |
CG5326-RA | 1694 | CG5326-RA | 707..778 | 362..433 | 210 | 86.1 | Plus |
CG5278-RA | 1722 | CG5278-RA | 537..612 | 358..433 | 185 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9816100..9816670 | 802..232 | 2855 | 100 | Minus |
3R | 32079331 | 3R | 9816741..9816957 | 233..17 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 22533152..22533223 | 433..362 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 22559793..22559868 | 433..358 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:25 has no hits.
BO06896.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:56 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:50 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 31..820 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:37 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 28..808 | 22..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:57 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 31..820 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:47 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 28..808 | 22..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:47 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9816097..9816669 | 233..804 | 99 | <- | Minus |
3R | 9816742..9816952 | 22..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:37 Download gff for
BO06896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5641819..5642391 | 233..804 | 99 | <- | Minus |
arm_3R | 5642464..5642674 | 22..232 | 100 | | Minus |
BO06896.pep Sequence
Translation from 16 to 820
> BO06896.pep
MFEVFDKPFADPVQLPLAGSIRTSVIIITVYLLFVLKLGRKLMDKHEALQ
LRGVLKFYNIGQVLFNSVIFVWGIHLLFVQKPYNLSCMQVLPQDHELKST
ERTLSYMYHLNKVLDLMDTIFFVLRKKQRQITFLHVFHHVFMVFTSHMLI
RFYGFGGHVFLICMFNVLVHIVMYGYYYASSQSQNVQESLWWKKYLTLGQ
LVQFLLMFLHCMYTYFQPNCSASRGVIYVISSASAFMFLMFTKFYIKTYI
RPKEVKSKGKVNASFLDH
BO06896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-PA | 262 | CG16904-PA | 1..262 | 1..262 | 1375 | 100 | Plus |
CG31141-PA | 253 | CG31141-PA | 1..249 | 1..253 | 701 | 50.6 | Plus |
CG8534-PA | 265 | CG8534-PA | 14..252 | 11..250 | 682 | 54.6 | Plus |
eloF-PA | 257 | CG16905-PA | 6..257 | 11..262 | 670 | 48.4 | Plus |
CG9458-PA | 264 | CG9458-PA | 15..262 | 11..258 | 645 | 46 | Plus |