Clone BO06901 Report

Search the DGRC for BO06901

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRhoL-RA
Protein status:BO06901.pep: validated full length
Sequenced Size:604

Clone Sequence Records

BO06901.3prime Sequence

602 bp (601 high quality bases) assembled on 2005-12-03

> BO06901.3prime
ATGGTCTAGAAAGCTTGCCAGTATTTTGCACGATTGCTTGGACGTCGTCT
TTGGTTTCCTCTCCACGGCTCTAACCGCCTCCTCGAAGACCTGCTGCAGG
TTCTGCTTCTTCTTGGCGGAGCACTCGACCAAGTTGAATGCGTGTATCTC
TTTGCGCATCTTTTTTCCCTCCTGTGTGGTCACGAACTTCTCCGAGTTGG
GAATGCGCAAGTCCAGTTTGGTGCCCACGAGAACCACGGGAACGTGGGCG
GAGAAGTGACGGATCTCCGGCCACCACTTGCTTTTCACGTTTTCGAATGA
GGTCCTACTGCTGATCGAATAGCACAACAGGAAGCAGTTGGTACTGGGAT
AGCTCAGGGGGCGCAGCCTTTCGTAATCCTCCTGGCCGGCAGTGTCCCAG
AGGGTCAGATTGTAGTCCCGATCATCTACGGCTATGTTGCAGGCGTGATT
GTCGAACACTGTGGGTATGTACTCCTCGGGGAACTCGTTCCGTGTGTAGG
TTATCAGCATGCAGGTTTTGCCCACCATGCCATCGCCCACGATGGTTATT
TTCAGCGGGCGCGGACTCTTCGTTATGTTCGCCGTCATGTCGACTGATAA
CT

BO06901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9366-PA 573 RhoL-RA 1..570 588..19 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 317..886 588..19 2850 100 Minus
RhoL-RA 1041 CG9366-RA 247..816 588..19 2850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498125 343..588 1230 100 Plus
3R 32079331 3R 9497631..9497802 171..342 860 100 Plus
3R 32079331 3R 9497420..9497575 19..174 780 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:24:49 has no hits.

BO06901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:01 Download gff for BO06901.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-PA 1..573 16..588 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:10 Download gff for BO06901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9366-PA 1..573 16..588 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:28 Download gff for BO06901.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 12..591 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:39 Download gff for BO06901.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 12..591 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:39 Download gff for BO06901.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9497414..9497572 12..171 98 <- Plus
3R 9497632..9497802 172..342 100 <- Plus
3R 9497880..9498127 343..591 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:28 Download gff for BO06901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323136..5323294 12..171 98 <- Plus
arm_3R 5323354..5323524 172..342 100 <- Plus
arm_3R 5323602..5323849 343..591 99   Plus

BO06901.5prime Sequence

602 bp (601 high quality bases) assembled on 2005-12-03

> BO06901.5prime
GAAGTTATCAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGGCAAGCTTTCTAGA
CC

BO06901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9366-PA 573 RhoL-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 317..886 17..586 2850 100 Plus
RhoL-RA 1041 CG9366-RA 247..816 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498125 262..17 1230 100 Minus
3R 32079331 3R 9497631..9497802 434..263 860 100 Minus
3R 32079331 3R 9497420..9497575 586..431 780 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:58:57 has no hits.

BO06901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:02 Download gff for BO06901.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-PA 1..573 17..589 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:12 Download gff for BO06901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9366-PA 1..573 17..589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:07 Download gff for BO06901.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 14..593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:35 Download gff for BO06901.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 245..822 14..593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:35 Download gff for BO06901.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9497414..9497572 434..593 98 <- Minus
3R 9497632..9497802 263..433 100 <- Minus
3R 9497880..9498127 14..262 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:07 Download gff for BO06901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323136..5323294 434..593 98 <- Minus
arm_3R 5323354..5323524 263..433 100 <- Minus
arm_3R 5323602..5323849 14..262 99   Minus

BO06901.complete Sequence

604 bp (604 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630589

> BO06901.complete
GAAGTTATCAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGGCAAGCTTTCTAGA
CCAT

BO06901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 645 CG9366-PB 73..642 17..586 2850 100 Plus
RhoL-RA 573 CG9366-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 317..886 17..586 2850 100 Plus
RhoL-RA 1041 CG9366-RA 247..816 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498125 262..17 1230 100 Minus
3R 32079331 3R 9497631..9497802 434..263 860 100 Minus
3R 32079331 3R 9497420..9497575 586..431 780 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:33:43 has no hits.

BO06901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:18 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 17..589 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:25 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 241..818 14..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:35 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 247..816 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:18 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 241..818 14..593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:50 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 247..816 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:50 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497632..9497802 263..433 100 <- Minus
3R 9497880..9498125 17..262 100   Minus
3R 9497417..9497572 434..588 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:35 Download gff for BO06901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323139..5323294 434..588 98 <- Minus
arm_3R 5323354..5323524 263..433 100 <- Minus
arm_3R 5323602..5323847 17..262 100   Minus

BO06901.pep Sequence

Translation from 16 to 604

> BO06901.pep
MTANITKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHAC
NIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFEN
VKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKFVTTQEGKKMRKEIHA
FNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQSCKILASFLDH

BO06901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PA 190 CG9366-PA 1..190 1..190 1007 100 Plus
RhoL-PB 214 CG9366-PB 25..214 1..190 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 12..190 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 12..190 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 12..190 516 51.6 Plus