Clone Sequence Records
BO06901.3prime Sequence
602 bp (601 high quality bases) assembled on 2005-12-03
> BO06901.3prime
ATGGTCTAGAAAGCTTGCCAGTATTTTGCACGATTGCTTGGACGTCGTCT
TTGGTTTCCTCTCCACGGCTCTAACCGCCTCCTCGAAGACCTGCTGCAGG
TTCTGCTTCTTCTTGGCGGAGCACTCGACCAAGTTGAATGCGTGTATCTC
TTTGCGCATCTTTTTTCCCTCCTGTGTGGTCACGAACTTCTCCGAGTTGG
GAATGCGCAAGTCCAGTTTGGTGCCCACGAGAACCACGGGAACGTGGGCG
GAGAAGTGACGGATCTCCGGCCACCACTTGCTTTTCACGTTTTCGAATGA
GGTCCTACTGCTGATCGAATAGCACAACAGGAAGCAGTTGGTACTGGGAT
AGCTCAGGGGGCGCAGCCTTTCGTAATCCTCCTGGCCGGCAGTGTCCCAG
AGGGTCAGATTGTAGTCCCGATCATCTACGGCTATGTTGCAGGCGTGATT
GTCGAACACTGTGGGTATGTACTCCTCGGGGAACTCGTTCCGTGTGTAGG
TTATCAGCATGCAGGTTTTGCCCACCATGCCATCGCCCACGATGGTTATT
TTCAGCGGGCGCGGACTCTTCGTTATGTTCGCCGTCATGTCGACTGATAA
CT
BO06901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9366-PA | 573 | RhoL-RA | 1..570 | 588..19 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-RB | 1205 | CG9366-RB | 317..886 | 588..19 | 2850 | 100 | Minus |
RhoL-RA | 1041 | CG9366-RA | 247..816 | 588..19 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9497880..9498125 | 343..588 | 1230 | 100 | Plus |
3R | 32079331 | 3R | 9497631..9497802 | 171..342 | 860 | 100 | Plus |
3R | 32079331 | 3R | 9497420..9497575 | 19..174 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:24:49 has no hits.
BO06901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:01 Download gff for
BO06901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-PA | 1..573 | 16..588 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:10 Download gff for
BO06901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9366-PA | 1..573 | 16..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:28 Download gff for
BO06901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 245..822 | 12..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:39 Download gff for
BO06901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 245..822 | 12..591 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:39 Download gff for
BO06901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9497414..9497572 | 12..171 | 98 | <- | Plus |
3R | 9497632..9497802 | 172..342 | 100 | <- | Plus |
3R | 9497880..9498127 | 343..591 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:28 Download gff for
BO06901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5323136..5323294 | 12..171 | 98 | <- | Plus |
arm_3R | 5323354..5323524 | 172..342 | 100 | <- | Plus |
arm_3R | 5323602..5323849 | 343..591 | 99 | | Plus |
BO06901.5prime Sequence
602 bp (601 high quality bases) assembled on 2005-12-03
> BO06901.5prime
GAAGTTATCAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGGCAAGCTTTCTAGA
CC
BO06901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9366-PA | 573 | RhoL-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-RB | 1205 | CG9366-RB | 317..886 | 17..586 | 2850 | 100 | Plus |
RhoL-RA | 1041 | CG9366-RA | 247..816 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9497880..9498125 | 262..17 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 9497631..9497802 | 434..263 | 860 | 100 | Minus |
3R | 32079331 | 3R | 9497420..9497575 | 586..431 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:58:57 has no hits.
BO06901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:02 Download gff for
BO06901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-PA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:12 Download gff for
BO06901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9366-PA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:07 Download gff for
BO06901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 245..822 | 14..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:35 Download gff for
BO06901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 245..822 | 14..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:35 Download gff for
BO06901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9497414..9497572 | 434..593 | 98 | <- | Minus |
3R | 9497632..9497802 | 263..433 | 100 | <- | Minus |
3R | 9497880..9498127 | 14..262 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:07 Download gff for
BO06901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5323136..5323294 | 434..593 | 98 | <- | Minus |
arm_3R | 5323354..5323524 | 263..433 | 100 | <- | Minus |
arm_3R | 5323602..5323849 | 14..262 | 99 | | Minus |
BO06901.complete Sequence
604 bp (604 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630589
> BO06901.complete
GAAGTTATCAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGGCAAGCTTTCTAGA
CCAT
BO06901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-RB | 645 | CG9366-PB | 73..642 | 17..586 | 2850 | 100 | Plus |
RhoL-RA | 573 | CG9366-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-RB | 1205 | CG9366-RB | 317..886 | 17..586 | 2850 | 100 | Plus |
RhoL-RA | 1041 | CG9366-RA | 247..816 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9497880..9498125 | 262..17 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 9497631..9497802 | 434..263 | 860 | 100 | Minus |
3R | 32079331 | 3R | 9497420..9497575 | 586..431 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:43 has no hits.
BO06901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:18 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:25 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 241..818 | 14..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:35 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 247..816 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:18 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 241..818 | 14..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:50 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RA | 247..816 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:50 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9497632..9497802 | 263..433 | 100 | <- | Minus |
3R | 9497880..9498125 | 17..262 | 100 | | Minus |
3R | 9497417..9497572 | 434..588 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:35 Download gff for
BO06901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5323139..5323294 | 434..588 | 98 | <- | Minus |
arm_3R | 5323354..5323524 | 263..433 | 100 | <- | Minus |
arm_3R | 5323602..5323847 | 17..262 | 100 | | Minus |
BO06901.pep Sequence
Translation from 16 to 604
> BO06901.pep
MTANITKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHAC
NIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFEN
VKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKFVTTQEGKKMRKEIHA
FNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQSCKILASFLDH
BO06901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-PA | 190 | CG9366-PA | 1..190 | 1..190 | 1007 | 100 | Plus |
RhoL-PB | 214 | CG9366-PB | 25..214 | 1..190 | 1007 | 100 | Plus |
Cdc42-PD | 191 | CG12530-PD | 4..191 | 12..190 | 516 | 51.6 | Plus |
Cdc42-PC | 191 | CG12530-PC | 4..191 | 12..190 | 516 | 51.6 | Plus |
Cdc42-PA | 191 | CG12530-PA | 4..191 | 12..190 | 516 | 51.6 | Plus |