Clone BO06909 Report

Search the DGRC for BO06909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG14823-RD
Protein status:BO06909.pep: validated full length
Sequenced Size:421

Clone Sequence Records

BO06909.3prime Sequence

419 bp (418 high quality bases) assembled on 2005-12-03

> BO06909.3prime
ATGGTCTAGAAAGCTTGCAGAGCTTCTTAGCGATTGAACAAGAGTCCTTG
TGGCACACTCACCCACTCCCGCAGCGGTGACCATGGGAAAGTCCTCCTCC
AGGACCTCCACTTGCCCCCGATCCTTGAGATTGATGTGCAGTCGGCCCAG
ATGATGCTTCTGTCTTAAGTGCATGTAAATGGCGCCGATGATGAGCAGAA
GGGCGATGAAAATGGCGCCCGTACTCAGGACTTGGCGAGTGCAGCAGGAC
CTTCGAGTCCATCGTTTCCGCTTACGACTTTCCCCGGACATTGACAGCGC
TTCGGCATATTCCTGATGCTCCACCACCTTGGACTCATCCGTTTCCACAT
CATCCTCACTGTATTTGGCCAATTCCGCCACACTGCTGCTGCATGTGGGC
TCCATGTCGACTGATAACT

BO06909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 390 CG14823-RD 1..387 405..19 1935 100 Minus
CG14823-PA 792 CG14823-RA 1..343 405..63 1715 100 Minus
CG14823-PB 351 CG14823-RB 1..343 405..63 1715 100 Minus
CG14823-PC 351 CG14823-RC 1..343 405..63 1715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1108 CG14823-RD 66..457 410..19 1945 99.7 Minus
CG14823-RB 974 CG14823-RB 66..417 410..59 1730 99.4 Minus
CG14823-RA 2098 CG14823-RA 66..413 410..63 1725 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066770 410..19 1945 99.7 Minus
Blast to na_te.dros performed on 2015-02-13 01:25:22 has no hits.

BO06909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:20 Download gff for BO06909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 18..405 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:33 Download gff for BO06909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 18..405 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:30 Download gff for BO06909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 11..413 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:09 Download gff for BO06909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 11..413 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:09 Download gff for BO06909.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7066375..7066777 11..413 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:30 Download gff for BO06909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059475..7059877 11..413 98   Minus

BO06909.5prime Sequence

419 bp (418 high quality bases) assembled on 2005-12-03

> BO06909.5prime
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTGCAAGCTTTCTAGACC

BO06909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 390 CG14823-RD 1..387 17..403 1935 100 Plus
CG14823-PA 792 CG14823-RA 1..343 17..359 1715 100 Plus
CG14823-PB 351 CG14823-RB 1..343 17..359 1715 100 Plus
CG14823-PC 351 CG14823-RC 1..343 17..359 1715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1108 CG14823-RD 66..457 12..403 1945 99.7 Plus
CG14823-RB 974 CG14823-RB 66..417 12..363 1730 99.4 Plus
CG14823-RA 2098 CG14823-RA 66..413 12..359 1725 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066770 12..403 1945 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 16:13:32 has no hits.

BO06909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:21 Download gff for BO06909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 17..404 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:34 Download gff for BO06909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 17..404 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:45 Download gff for BO06909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:47:07 Download gff for BO06909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..411 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:47:07 Download gff for BO06909.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7066375..7066777 9..411 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:45 Download gff for BO06909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059475..7059877 9..411 98   Plus

BO06909.complete Sequence

421 bp (421 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630590

> BO06909.complete
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTGCAAGCTTTCTAGACCAT

BO06909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 390 CG14823-PD 1..387 17..403 1935 100 Plus
CG14823-RB 351 CG14823-PB 1..347 17..363 1720 99.7 Plus
CG14823-RA 792 CG14823-PA 1..343 17..359 1715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1108 CG14823-RD 66..457 12..403 1945 99.7 Plus
CG14823-RB 974 CG14823-RB 66..417 12..363 1730 99.4 Plus
CG14823-RA 2098 CG14823-RA 66..413 12..359 1725 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066770 12..403 1945 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 06:45:33 has no hits.

BO06909.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:05 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 1..390 17..404 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:14 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..411 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:05 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 71..457 17..405 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:05 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:32 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 71..457 17..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:32 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7066384..7066770 17..405 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:05 Download gff for BO06909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059484..7059870 17..405 99   Plus

BO06909.pep Sequence

Translation from 16 to 421

> BO06909.pep
MEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRKRKRWT
RRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKDRGQVE
VLEEDFPMVTAAGVGECATRTLVQSLRSSASFLDH

BO06909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 129 CG14823-PD 1..129 1..129 655 100 Plus
CG14823-PB 116 CG14823-PB 1..116 1..116 584 98.3 Plus
CG14823-PA 263 CG14823-PA 1..114 1..114 582 100 Plus