Clone BO06910 Report

Search the DGRC for BO06910

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG2789-RA
Protein status:BO06910.pep: validated full length
Sequenced Size:589

Clone Sequence Records

BO06910.5prime Sequence

587 bp (586 high quality bases) assembled on 2005-12-03

> BO06910.5prime
GAAGTTATCAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCC
GCATCGCCGGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGG
CGGCTGACCAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCC
GTCCTTCAAGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGT
ACGCGGGAATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGC
TTCGCCGGCGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCT
GGCCTTGAACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCA
AGGGCGGCCTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGC
GGCGTTCTGTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACC
CTACGTCGCCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGA
AGCTGAACCCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCT
AGCAGCCACGCTAAGTCGAGTGCAAGCTTTCTAGACC

BO06910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-PA 558 CG2789-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 853 CG2789-RA 88..642 17..571 2775 100 Plus
rempA-RC 5308 CG11838-RC 273..612 356..17 1700 100 Minus
rempA-RC 5308 CG11838-RC 1..214 569..356 1070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 559699..560038 17..356 1700 100 Plus
2L 23513712 2L 560097..560312 356..571 1080 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:08:11 has no hits.

BO06910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:22 Download gff for BO06910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 17..575 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:37 Download gff for BO06910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:28 Download gff for BO06910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 17..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:48 Download gff for BO06910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 17..577 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:48 Download gff for BO06910.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 560097..560317 356..577 99   Plus
2L 559699..560037 17..355 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:28 Download gff for BO06910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 559699..560037 17..355 100 -> Plus
arm_2L 560097..560317 356..577 99   Plus

BO06910.3prime Sequence

587 bp (586 high quality bases) assembled on 2005-12-03

> BO06910.3prime
ATGGTCTAGAAAGCTTGCACTCGACTTAGCGTGGCTGCTAGAGGGCTTCT
CCTCGTCCTTGGGCGCCTGCTCCTTCTCCGGGTTCAGCTTCCAGATGGCG
TAGTTCAGAGCCGTCGCGAATCCCAGCCAGGCGACGTAGGGTACGAAGAG
CAATCCAGCGGTCTTGTTCACTCGGTAGAACAGAACGCCGCAGGCGGACG
CGGCGGCCGTGAGTGCAACTATGTCAATAAGGCCGCCCTTGATGTTGTGC
TGCCCGAAGAAAATGGGCGTCCACGCCCAGTTCAAGGCCAGCTGGGTGCC
GTACGCGATCAGGGGCAGTTTGGCCGCCTCGCCGGCGAAGCCTCCGCCAT
CACGCCACACCAGGTAGGAGCCGTAGCCCATTCCCGCGTACAAGGAGATC
CACATCGGCGCAAAGACCGAGTTGGGCGGCTTGAAGGACGGGAACTTAAG
GTTGGCGTACCAGCTCTGGAGATGCTGCCTGGTCAGCCGCCCGTTATAGA
TGCCGCCCAGATTGGGCAGAATCACGGCCCCGGCGATGCGGAGAATGTTT
CCAGCACACGGACGATCAGCCATGTCGACTGATAACT

BO06910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-PA 558 CG2789-RA 1..555 573..19 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 853 CG2789-RA 88..642 573..19 2775 100 Minus
rempA-RC 5308 CG11838-RC 273..612 234..573 1700 100 Plus
rempA-RC 5308 CG11838-RC 1..214 21..234 1070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 559699..560038 573..234 1700 100 Minus
2L 23513712 2L 560097..560312 234..19 1080 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:14:03 has no hits.

BO06910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:21 Download gff for BO06910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 15..573 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:36 Download gff for BO06910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 15..573 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:27 Download gff for BO06910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 13..573 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:59 Download gff for BO06910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 13..573 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:59 Download gff for BO06910.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 559699..560037 235..573 100 -> Minus
2L 560097..560317 13..234 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:27 Download gff for BO06910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 559699..560037 235..573 100 -> Minus
arm_2L 560097..560317 13..234 99   Minus

BO06910.complete Sequence

589 bp (589 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630591

> BO06910.complete
GAAGTTATCAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCC
GCATCGCCGGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGG
CGGCTGACCAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCC
GTCCTTCAAGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGT
ACGCGGGAATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGC
TTCGCCGGCGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCT
GGCCTTGAACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCA
AGGGCGGCCTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGC
GGCGTTCTGTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACC
CTACGTCGCCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGA
AGCTGAACCCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCT
AGCAGCCACGCTAAGTCGAGTGCAAGCTTTCTAGACCAT

BO06910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 558 CG2789-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 853 CG2789-RA 88..642 17..571 2775 100 Plus
rempA-RC 5308 CG11838-RC 273..612 356..17 1700 100 Minus
rempA-RC 5308 CG11838-RC 1..214 569..356 1070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 559699..560038 17..356 1700 100 Plus
2L 23513712 2L 560097..560312 356..571 1080 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:45:38 has no hits.

BO06910.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:58 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 1..558 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:51 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 89..648 17..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:08 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..642 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:58 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 89..648 17..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:04 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..642 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:04 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
2L 559699..560037 17..355 100 -> Plus
2L 560097..560312 356..573 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:08 Download gff for BO06910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 559699..560037 17..355 100 -> Plus
arm_2L 560097..560312 356..573 99   Plus

BO06910.pep Sequence

Translation from 16 to 589

> BO06910.pep
MADRPCAGNILRIAGAVILPNLGGIYNGRLTRQHLQSWYANLKFPSFKPP
NSVFAPMWISLYAGMGYGSYLVWRDGGGFAGEAAKLPLIAYGTQLALNWA
WTPIFFGQHNIKGGLIDIVALTAAASACGVLFYRVNKTAGLLFVPYVAWL
GFATALNYAIWKLNPEKEQAPKDEEKPSSSHAKSSASFLDH

BO06910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-PA 185 CG2789-PA 1..185 1..185 993 100 Plus