Clone Sequence Records
BO06912.3prime Sequence
632 bp (631 high quality bases) assembled on 2005-12-03
> BO06912.3prime
ATGGTCTAGAAAGCTTGCGAATAAGAACTGACGTTTTCGGGTGCTGTAGG
CGTTTGACAACCGGAGAGATACAATGGGTGGTGGACAGCTATCGGTGGCA
CGAGCAAATTTGTTGCGTTGGATCATCGCCGCATTGGTGTCCCATTGGTT
GATAAAGGCACGGGCCTCGTCGTCACATGGCTTTGCCGTACTCGGTCTTT
CTTCCTGGGCTCGGCGGCGTCGAGGAGCCTCAGTTTCCATCGACTCCAGA
AAGTCCCGTCTACGATTTCGTTTGGTCGCCACACTGTCCGGGAAATTAAC
CCAGGTGCACTCGTACTTGCGCTTCTCCAGTTCGCGCGGATGGTACTGCT
CGTTATCGAAGCGTTCCTGATCGTCCCCGACCGAGATGCGTCCGTGGCCC
TCGTCCTGCTCCCACATGGAGCGTCGCTTGTTCTTCTTGTACACATCCGC
TTTCTCCCGCTCCCTGAGTATCTGATCGTCTGGCAGGTATTGGCTGCCCA
CTCTGGGCCGCTGGGAACGCCTGGCAATGTGACGCGTTGAGGCGCATTCG
ATCCGCGCACGGAGGAGCTCGATGCAACGGTTCACCATCATCCGAGTGCC
ACCGTGGATGTTAACCATGTCGACTGATAACT
BO06912.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-PA | 603 | CG5762-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-RA | 921 | CG5762-RA | 133..732 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24361137..24361551 | 204..618 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 24360894..24361082 | 19..207 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:06:18 has no hits.
BO06912.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:26 Download gff for
BO06912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:41 Download gff for
BO06912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:19 Download gff for
BO06912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 126..741 | 10..627 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:10 Download gff for
BO06912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 126..741 | 10..627 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:10 Download gff for
BO06912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24360884..24361079 | 10..204 | 97 | <- | Plus |
| 3R | 24361138..24361558 | 205..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:19 Download gff for
BO06912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20186606..20186801 | 10..204 | 97 | <- | Plus |
| arm_3R | 20186860..20187280 | 205..627 | 99 | | Plus |
BO06912.5prime Sequence
632 bp (631 high quality bases) assembled on 2005-12-03
> BO06912.5prime
GAAGTTATCAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGG
TGAACCGTTGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACG
CGTCACATTGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCT
GCCAGACGATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGA
AGAACAAGCGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATC
TCGGTCGGGGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCG
CGAACTGGAGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACA
GTGTGGCGACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAA
ACTGAGGCTCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGC
AAAGCCATGTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCA
ATGCGGCGATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGT
CCACCACCCATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAA
ACGTCAGTTCTTATTCGCAAGCTTTCTAGACC
BO06912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-PA | 603 | CG5762-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-RA | 921 | CG5762-RA | 133..732 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24361137..24361551 | 431..17 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 24360894..24361082 | 616..428 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:28:54 has no hits.
BO06912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:27 Download gff for
BO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:42 Download gff for
BO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:47 Download gff for
BO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 126..741 | 8..625 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:52 Download gff for
BO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 126..741 | 8..625 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:52 Download gff for
BO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24360884..24361079 | 431..625 | 97 | <- | Minus |
| 3R | 24361138..24361558 | 8..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:47 Download gff for
BO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20186606..20186801 | 431..625 | 97 | <- | Minus |
| arm_3R | 20186860..20187280 | 8..430 | 99 | | Minus |
BO06912.complete Sequence
634 bp (634 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630592
> BO06912.complete
GAAGTTATCAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGG
TGAACCGTTGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACG
CGTCACATTGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCT
GCCAGACGATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGA
AGAACAAGCGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATC
TCGGTCGGGGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCG
CGAACTGGAGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACA
GTGTGGCGACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAA
ACTGAGGCTCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGC
AAAGCCATGTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCA
ATGCGGCGATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGT
CCACCACCCATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAA
ACGTCAGTTCTTATTCGCAAGCTTTCTAGACCAT
BO06912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-RA | 603 | CG5762-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-RA | 921 | CG5762-RA | 133..732 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24361137..24361551 | 431..17 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 24360894..24361082 | 616..428 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:40 has no hits.
BO06912.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:59 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:53 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 132..747 | 8..625 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:38 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 133..732 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:59 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 132..747 | 8..625 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:35 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 133..732 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:35 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24360892..24361079 | 431..618 | 98 | <- | Minus |
| 3R | 24361138..24361551 | 17..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:38 Download gff for
BO06912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20186860..20187273 | 17..430 | 100 | | Minus |
| arm_3R | 20186614..20186801 | 431..618 | 98 | <- | Minus |
BO06912.pep Sequence
Translation from 16 to 634
> BO06912.pep
MVNIHGGTRMMVNRCIELLRARIECASTRHIARRSQRPRVGSQYLPDDQI
LREREKADVYKKNKRRSMWEQDEGHGRISVGDDQERFDNEQYHPRELEKR
KYECTWVNFPDSVATKRNRRRDFLESMETEAPRRRRAQEERPSTAKPCDD
EARAFINQWDTNAAMIQRNKFARATDSCPPPIVSLRLSNAYSTRKRQFLF
ASFLDH
BO06912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-PA | 200 | CG5762-PA | 1..200 | 1..200 | 1063 | 100 | Plus |
