Clone Sequence Records
BO06913.3prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-03
> BO06913.3prime
ATGGTCTAGAAAGCTTGCGCGCGGACACATGACCTGCTTGCCACCGTCCA
CAGGAAGGGTCACGCCGGTCACGAAGCTGGCCAGCTCGCTGGCCAGGAAG
CAAATGGCGGCCGCCACCTCCTTTGGCTCCCCAATCCGGCCCAGGGCGTG
GGTCTTCTTCGAGTGCTCCAGAAATTCGGCGTAGCTCTGCTCGTCCATGC
CCCCCGCCTTTTGCAGATTGGTGCGAATCACACCCGGATTGACCGCATTC
ACCCGAACACCCTGGGGACCCAGATCCAGGGCAAGGGAGCGGGTAAACTG
GTCCACCGCCGCCTTGGACATGTTGTAGGCCACCAGATTGGGAAAAGCGC
GAAGTCCGCAGACGCTGGACACGTTGACAATGCTGCCCTTACACTGCAGC
AACTGGGGCAGCAGCAACTTGGTCAGATAAAACCCAGAACGCACATTGGC
CTCCATCACGTGGGTGAAGCAGGCCAGTTCCGTGCTCTGCAGCGTTCCCG
TGGGCATGATGCCAGCCCCATTTACCAGCACATCCAGCTTGCCCTCGTAG
CGCTCCGTGGTCTTCCGCGCAATGCATTCGATCTCCGGAGGCTTGAGCAG
ATCTCCGGCTATGCCGTACGGCTCGTGGCCCATCTTCATGCAGCGTTTCA
TCACACATATGAGGCCCTCCTCCTCCCGATCCACCAGGGCCAGGCAGGCA
CCCAGCTTCGAGAACATCTCCGCCGCGGCGGCCCCGATCCCGGAGGCTGC
GCCCGTGATAAGCACCACTTTGCCGGAGAAGTCCAGACCAGCCTTGCCCT
TGCTGCCCATGTCGACTGATAACT
BO06913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-PA | 795 | CG31546-RA | 1..792 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 999 | CG31546-RA | 63..854 | 810..19 | 3960 | 100 | Minus |
CG31549-RB | 991 | CG31549-RB | 465..782 | 390..73 | 390 | 75.6 | Minus |
CG31549-RA | 1130 | CG31549-RA | 604..921 | 390..73 | 390 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5634771..5635562 | 19..810 | 3960 | 100 | Plus |
3R | 32079331 | 3R | 5632795..5633112 | 390..73 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:22:32 has no hits.
BO06913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:28 Download gff for
BO06913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:44 Download gff for
BO06913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:10 Download gff for
BO06913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..854 | 19..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:59 Download gff for
BO06913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..854 | 19..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:59 Download gff for
BO06913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5634771..5635572 | 19..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:10 Download gff for
BO06913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1460493..1461294 | 19..822 | 99 | | Plus |
BO06913.5prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-03
> BO06913.5prime
GAAGTTATCAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCT
CCGGCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCC
GCGGCGGAGATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCG
GGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCC
ACGAGCCGTACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAA
TGCATTGCGCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCT
GGTAAATGGGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAAC
TGGCCTGCTTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTAT
CTGACCAAGTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGT
CAACGTGTCCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCT
ACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTG
GATCTGGGTCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGAT
TCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCG
AATTTCTGGAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAG
CCAAAGGAGGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAG
CTTCGTGACCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGT
GTCCGCGCGCAAGCTTTCTAGACC
BO06913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-PA | 795 | CG31546-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 999 | CG31546-RA | 63..854 | 17..808 | 3960 | 100 | Plus |
CG31549-RB | 991 | CG31549-RB | 465..782 | 437..754 | 390 | 75.6 | Plus |
CG31549-RA | 1130 | CG31549-RA | 604..921 | 437..754 | 390 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5634771..5635562 | 808..17 | 3960 | 100 | Minus |
3R | 32079331 | 3R | 5632795..5633112 | 437..754 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:06:25 has no hits.
BO06913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:30 Download gff for
BO06913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:45 Download gff for
BO06913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:22 Download gff for
BO06913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..854 | 5..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:39 Download gff for
BO06913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..854 | 5..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:39 Download gff for
BO06913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5634771..5635572 | 5..808 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:22 Download gff for
BO06913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1460493..1461294 | 5..808 | 99 | | Minus |
BO06913.complete Sequence
826 bp (826 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630593
> BO06913.complete
GAAGTTATCAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCT
CCGGCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCC
GCGGCGGAGATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCG
GGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCC
ACGAGCCGTACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAA
TGCATTGCGCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCT
GGTAAATGGGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAAC
TGGCCTGCTTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTAT
CTGACCAAGTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGT
CAACGTGTCCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCT
ACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTG
GATCTGGGTCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGAT
TCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCG
AATTTCTGGAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAG
CCAAAGGAGGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAG
CTTCGTGACCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGT
GTCCGCGCGCAAGCTTTCTAGACCAT
BO06913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 795 | CG31546-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG31549-RB | 774 | CG31549-PB | 400..717 | 437..754 | 390 | 74.8 | Plus |
CG31549-RA | 774 | CG31549-PA | 400..717 | 437..754 | 390 | 74.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 999 | CG31546-RA | 63..854 | 17..808 | 3960 | 100 | Plus |
CG31549-RB | 991 | CG31549-RB | 465..782 | 437..754 | 390 | 74.8 | Plus |
CG31549-RA | 1130 | CG31549-RA | 604..921 | 437..754 | 390 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5634771..5635562 | 808..17 | 3960 | 100 | Minus |
3R | 32079331 | 3R | 5632795..5633112 | 437..754 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:16:29 has no hits.
BO06913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:00 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:54 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..854 | 5..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:19 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 63..854 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:00 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..854 | 5..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:37 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 63..854 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:37 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5634769..5635562 | 17..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:19 Download gff for
BO06913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1460491..1461284 | 17..810 | 99 | | Minus |
BO06913.pep Sequence
Translation from 16 to 826
> BO06913.pep
MGSKGKAGLDFSGKVVLITGAASGIGAAAAEMFSKLGACLALVDREEEGL
ICVMKRCMKMGHEPYGIAGDLLKPPEIECIARKTTERYEGKLDVLVNGAG
IMPTGTLQSTELACFTHVMEANVRSGFYLTKLLLPQLLQCKGSIVNVSSV
CGLRAFPNLVAYNMSKAAVDQFTRSLALDLGPQGVRVNAVNPGVIRTNLQ
KAGGMDEQSYAEFLEHSKKTHALGRIGEPKEVAAAICFLASELASFVTGV
TLPVDGGKQVMCPRASFLDH
BO06913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-PA | 264 | CG31546-PA | 1..264 | 1..264 | 1349 | 100 | Plus |
CG31548-PA | 256 | CG31548-PA | 1..256 | 9..264 | 716 | 57.6 | Plus |
CG31549-PB | 257 | CG31549-PB | 4..257 | 11..264 | 706 | 56.5 | Plus |
CG31549-PA | 257 | CG31549-PA | 4..257 | 11..264 | 706 | 56.5 | Plus |
CG12171-PA | 257 | CG12171-PA | 4..257 | 11..264 | 672 | 52.9 | Plus |