Clone BO06919 Report

Search the DGRC for BO06919

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCpr57A-RA
Protein status:BO06919.pep: validated full length
Sequenced Size:586

Clone Sequence Records

BO06919.3prime Sequence

584 bp (583 high quality bases) assembled on 2005-12-03

> BO06919.3prime
ATGGTCTAGAAAGCTTGCCGGATGGTACTGTCCATCTTCGATCTCTCCAT
GCTCAGATTGAGCGGCCAGCGCCAGACGCTGTGCCTCCTGTTGGCGTCCA
ATGGCCGCGTGCTCGGCAGCGATCCGCTCGAAGGCGCTCAGGTGCTTCTG
GGTGGCATGTGCAACGGCGGCGCTGGCATGGGGGGCATTTGCTAGTGCAA
CTTGGCCTGGCGTGTGGTTGGCATGCTCTTGCGCAATCCGATTGTAGGCC
GCGAAGTGCCTTTGCTTGGCTGCCTGGACGGCGGCGCTGTCCTCCAGTTT
GTGGCTAAGCTGAGGATGGAAACCATGCTCATCCGCCACATACTGTACGG
TGCGCACCTGGTTCTTTGGGTCCACATAGGAGAAAGCACCGCGGATCACA
CCCGATCCATCGGACACCTCGGTATGCTGGCGATCCACATGGCCGGGAGC
ACGGCCAGCTTGGTAGCTGAACACATACGGACTTGCTGGAACCTTCGGTT
CCGGGGTGACCAGATGGGACACATCGGCCGCAGCGACTGCCAGCAAACAA
ACGACCAAAACTATAAACATGTCGACTGATAACT

BO06919.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18066-PA 555 CG18066-RA 1..552 570..19 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57d-RB 1488 CG30150-RB 50..602 571..19 2765 100 Minus
Cpr57A-RB 1488 CG18066-RB 50..602 571..19 2765 100 Minus
Cpr57A-RA 656 CG18066-RA 50..602 571..19 2765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20549631..20549989 198..556 1795 100 Plus
2R 25286936 2R 20549382..20549561 19..198 900 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:08:15 has no hits.

BO06919.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:39 Download gff for BO06919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:57 Download gff for BO06919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:30 Download gff for BO06919.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..602 19..578 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:31:06 Download gff for BO06919.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..602 19..578 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:31:06 Download gff for BO06919.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20549382..20549561 19..198 100 <- Plus
2R 20549632..20549988 199..555 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:30 Download gff for BO06919.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16436887..16437066 19..198 100 <- Plus
arm_2R 16437137..16437493 199..555 100 <- Plus

BO06919.5prime Sequence

584 bp (583 high quality bases) assembled on 2005-12-03

> BO06919.5prime
GAAGTTATCAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAG
TCGCTGCGGCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCA
GCAAGTCCGTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGT
GGATCGCCAGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTG
CTTTCTCCTATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTG
GCGGATGAGCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAG
CGCCGCCGTCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGA
TTGCGCAAGAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAAT
GCCCCCCATGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAG
CGCCTTCGAGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGG
AGGCACAGCGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAA
GATGGACAGTACCATCCGGCAAGCTTTCTAGACC

BO06919.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18066-PA 555 CG18066-RA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57d-RB 1488 CG30150-RB 50..602 16..568 2765 100 Plus
Cpr57A-RB 1488 CG18066-RB 50..602 16..568 2765 100 Plus
Cpr57A-RA 656 CG18066-RA 50..602 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20549631..20549989 389..31 1795 100 Minus
2R 25286936 2R 20549382..20549561 568..389 900 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:07:45 has no hits.

BO06919.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:03:40 Download gff for BO06919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 17..569 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:58 Download gff for BO06919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:54 Download gff for BO06919.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..602 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:55 Download gff for BO06919.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..602 9..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:55 Download gff for BO06919.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20549382..20549561 389..568 100 <- Minus
2R 20549632..20549988 32..388 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:54 Download gff for BO06919.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16436887..16437066 389..568 100 <- Minus
arm_2R 16437137..16437493 32..388 100 <- Minus

BO06919.complete Sequence

586 bp (586 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630594

> BO06919.complete
GAAGTTATCAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAG
TCGCTGCGGCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCA
GCAAGTCCGTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGT
GGATCGCCAGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTG
CTTTCTCCTATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTG
GCGGATGAGCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAG
CGCCGCCGTCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGA
TTGCGCAAGAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAAT
GCCCCCCATGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAG
CGCCTTCGAGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGG
AGGCACAGCGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAA
GATGGACAGTACCATCCGGCAAGCTTTCTAGACCAT

BO06919.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr57A-RB 555 CG18066-PB 1..552 17..568 2760 100 Plus
Cpr57A-RA 555 CG18066-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57d-RB 1488 CG30150-RB 50..602 16..568 2765 100 Plus
Cpr57A-RB 1488 CG18066-RB 50..602 16..568 2765 100 Plus
Cpr57A-RA 656 CG18066-RA 50..602 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20549631..20549989 389..31 1795 100 Minus
2R 25286936 2R 20549382..20549561 568..389 900 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:07:52 has no hits.

BO06919.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:25 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RB 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:35 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57d-RB 18..577 9..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:53 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 57..602 23..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:25 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57d-RB 18..577 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:21 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 57..602 23..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:21 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20549380..20549561 389..570 98 <- Minus
2R 20549632..20549996 23..388 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:53 Download gff for BO06919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16436885..16437066 389..570 98 <- Minus
arm_2R 16437137..16437501 23..388 98   Minus

BO06919.pep Sequence

Translation from 16 to 586

> BO06919.pep
MFIVLVVCLLAVAAADVSHLVTPEPKVPASPYVFSYQAGRAPGHVDRQHT
EVSDGSGVIRGAFSYVDPKNQVRTVQYVADEHGFHPQLSHKLEDSAAVQA
AKQRHFAAYNRIAQEHANHTPGQVALANAPHASAAVAHATQKHLSAFERI
AAEHAAIGRQQEAQRLALAAQSEHGEIEDGQYHPASFLDH

BO06919.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr57A-PB 184 CG18066-PB 1..184 1..184 949 100 Plus
Cpr57A-PA 184 CG18066-PA 1..184 1..184 949 100 Plus