Clone Sequence Records
BO06934.3prime Sequence
788 bp (787 high quality bases) assembled on 2005-12-03
> BO06934.3prime
ATGGTCTAGAAAGCTTGCGTAGGCGATTCCAGTCCTTTGATGGATCCAAT
CCAGTGCGCTGGTGATCCTAGCAAATCCAGCGGGCAATCCCAAGGTGCAC
CCGTTGGAGGCCACAAATGCGGAAATGCCCACCACGGTGGAATCCTGTTT
GGTGATCAGGGGGCTGCCGGCATCGCCAAAGCAAGTGGATCTGCCGCTGG
GCGTACGGGTGCACAGGATCTGATCGGAGACGGTGGTGGATCCGTAGAAG
GCGATACACTCGTTATTGGACATTATCTGAAGGTCGACGCATTGCAGCGC
ATCGGTGAGTCCATTGCTGAAGGTGGTCACTCCCCATCCACAGACATTTG
CCCACCAGTTCTCGTAGCGCTGGGATCGATTTCTCAGTGATGGAAGGGCC
ACCCGGTTGACCCGGTTGCTGAATCCGACTCGAGGAACTCGAACCAGGGC
GAGATGTTGATTACCCGTAACGTACTCACTAGTTCCCACTGTCACCGTAA
ACTGGGCCTGACTCAGCCGGGTGGCTCCAAAGTAGATGGTCACTCCGGAA
CTGCCCGTTAGACACTGAGCGGATGTAAGGATCCAGGTGTCGCCTATAAT
AGTGCCACTGCACCAGATGTTGCTCTGTCCAAAGGCCATGCCCACCACAT
AGGGTGCCTGACCTTCATAAGCGGGGCTTCCATTGGTTATAATGTGATCA
GGATCCTCGGAATCCTTCTTAGCACTTCCTGCTGCGACGAGAGTGAGACC
CAAGAAAACTACCAATAGCTTCATGTCGACTGATAACT
BO06934.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-PA | 759 | CG3088-RA | 1..756 | 774..19 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-RA | 836 | CG3088-RA | 20..776 | 775..19 | 3785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9600550..9601306 | 19..775 | 3785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:52:05 has no hits.
BO06934.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:09 Download gff for
BO06934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:35 Download gff for
BO06934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:16 Download gff for
BO06934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 20..779 | 15..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:06 Download gff for
BO06934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 20..779 | 15..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:06 Download gff for
BO06934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9600544..9601306 | 14..775 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:16 Download gff for
BO06934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9593644..9594406 | 14..775 | 99 | | Plus |
BO06934.5prime Sequence
788 bp (787 high quality bases) assembled on 2005-12-03
> BO06934.5prime
GAAGTTATCAGTCGACATGAAGCTATTGGTAGTTTTCTTGGGTCTCACTC
TCGTCGCAGCAGGAAGTGCTAAGAAGGATTCCGAGGATCCTGATCACATT
ATAACCAATGGAAGCCCCGCTTATGAAGGTCAGGCACCCTATGTGGTGGG
CATGGCCTTTGGACAGAGCAACATCTGGTGCAGTGGCACTATTATAGGCG
ACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCGGAGTG
ACCATCTACTTTGGAGCCACCCGGCTGAGTCAGGCCCAGTTTACGGTGAC
AGTGGGAACTAGTGAGTACGTTACGGGTAATCAACATCTCGCCCTGGTTC
GAGTTCCTCGAGTCGGATTCAGCAACCGGGTCAACCGGGTGGCCCTTCCA
TCACTGAGAAATCGATCCCAGCGCTACGAGAACTGGTGGGCAAATGTCTG
TGGATGGGGAGTGACCACCTTCAGCAATGGACTCACCGATGCGCTGCAAT
GCGTCGACCTTCAGATAATGTCCAATAACGAGTGTATCGCCTTCTACGGA
TCCACCACCGTCTCCGATCAGATCCTGTGCACCCGTACGCCCAGCGGCAG
ATCCACTTGCTTTGGCGATGCCGGCAGCCCCCTGATCACCAAACAGGATT
CCACCGTGGTGGGCATTTCCGCATTTGTGGCCTCCAACGGGTGCACCTTG
GGATTGCCCGCTGGATTTGCTAGGATCACCAGCGCACTGGATTGGATCCA
TCAAAGGACTGGAATCGCCTACGCAAGCTTTCTAGACC
BO06934.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-PA | 759 | CG3088-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-RA | 836 | CG3088-RA | 20..776 | 16..772 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9600550..9601306 | 772..16 | 3785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:50:27 has no hits.
BO06934.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:09 Download gff for
BO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:37 Download gff for
BO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:12 Download gff for
BO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 20..779 | 16..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:46 Download gff for
BO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 20..779 | 16..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:46 Download gff for
BO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9600544..9601306 | 16..777 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:12 Download gff for
BO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9593644..9594406 | 16..777 | 99 | | Minus |
BO06934.complete Sequence
790 bp (790 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630598
> BO06934.complete
GAAGTTATCAGTCGACATGAAGCTATTGGTAGTTTTCTTGGGTCTCACTC
TCGTCGCAGCAGGAAGTGCTAAGAAGGATTCCGAGGATCCTGATCACATT
ATAACCAATGGAAGCCCCGCTTATGAAGGTCAGGCACCCTATGTGGTGGG
CATGGCCTTTGGACAGAGCAACATCTGGTGCAGTGGCACTATTATAGGCG
ACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCGGAGTG
ACCATCTACTTTGGAGCCACCCGGCTGAGTCAGGCCCAGTTTACGGTGAC
AGTGGGAACTAGTGAGTACGTTACGGGTAATCAACATCTCGCCCTGGTTC
GAGTTCCTCGAGTCGGATTCAGCAACCGGGTCAACCGGGTGGCCCTTCCA
TCACTGAGAAATCGATCCCAGCGCTACGAGAACTGGTGGGCAAATGTCTG
TGGATGGGGAGTGACCACCTTCAGCAATGGACTCACCGATGCGCTGCAAT
GCGTCGACCTTCAGATAATGTCCAATAACGAGTGTATCGCCTTCTACGGA
TCCACCACCGTCTCCGATCAGATCCTGTGCACCCGTACGCCCAGCGGCAG
ATCCACTTGCTTTGGCGATGCCGGCAGCCCCCTGATCACCAAACAGGATT
CCACCGTGGTGGGCATTTCCGCATTTGTGGCCTCCAACGGGTGCACCTTG
GGATTGCCCGCTGGATTTGCTAGGATCACCAGCGCACTGGATTGGATCCA
TCAAAGGACTGGAATCGCCTACGCAAGCTTTCTAGACCAT
BO06934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-RA | 759 | CG3088-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-RA | 836 | CG3088-RA | 20..776 | 16..772 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9600550..9601306 | 772..16 | 3785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:56:36 has no hits.
BO06934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:04 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:00 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 9..768 | 16..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:13 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 21..776 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:04 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 9..768 | 16..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:17 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3088-RA | 21..776 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:17 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9600548..9601305 | 17..774 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:13 Download gff for
BO06934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9593648..9594405 | 17..774 | 99 | | Minus |
BO06934.pep Sequence
Translation from 16 to 790
> BO06934.pep
MKLLVVFLGLTLVAAGSAKKDSEDPDHIITNGSPAYEGQAPYVVGMAFGQ
SNIWCSGTIIGDTWILTSAQCLTGSSGVTIYFGATRLSQAQFTVTVGTSE
YVTGNQHLALVRVPRVGFSNRVNRVALPSLRNRSQRYENWWANVCGWGVT
TFSNGLTDALQCVDLQIMSNNECIAFYGSTTVSDQILCTRTPSGRSTCFG
DAGSPLITKQDSTVVGISAFVASNGCTLGLPAGFARITSALDWIHQRTGI
AYASFLDH
BO06934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3088-PA | 252 | CG3088-PA | 1..252 | 1..252 | 1324 | 100 | Plus |
| Jon66Ci-PA | 260 | CG7118-PA | 1..259 | 1..252 | 609 | 46.6 | Plus |
| Jon25Bi-PB | 266 | CG8867-PB | 1..265 | 1..252 | 607 | 46.1 | Plus |
| Jon66Cii-PA | 262 | CG7170-PA | 1..261 | 1..252 | 597 | 45.5 | Plus |
| Jon25Bii-PB | 276 | CG8869-PB | 43..276 | 29..252 | 594 | 47 | Plus |
