Clone BO06936 Report

Search the DGRC for BO06936

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG32485-RA
Protein status:BO06936.pep: validated full length
Sequenced Size:700

Clone Sequence Records

BO06936.3prime Sequence

698 bp (697 high quality bases) assembled on 2005-12-03

> BO06936.3prime
ATGGTCTAGAAAGCTTGCCATGTCCGTTGGCAGGATGTCGGGGATGAGGT
ACTGGCACAGCTCCGCCTCGTCCGCCACAAACTTCACCTTCTTGGCCGTA
TTGTCGTCCAACAGTACACGTATGGCCGGCCAAATGGTGGAGAACAGACC
GGGCGAGTTGATGATCAGACAGACGCCCAGGCGCTCCGGAAAGTGCTTGC
CCAGCAGCCAGATGAGATTCTGCACTAGCTGATAGTCCATGCAGCTGGTG
CTGAACTCGGCCAGATCGAAGACAATGCACAGGCGGTCGGTGACCTCCTC
GAAGCACTTCTTGCACGCCTCCTCCAAATTGTAGACGATGAAGCGCGTCA
GCTCGTCGATGTCCCGCTCCGAGCTGTGATTTTTGGCCGGAATGTAGATC
ACCGGACGGCCGATGCAGTCGCGGTGGCGCAGCAGGCGCGCCTTCTTGTC
CAGCTGGCTGCGGTCCATCTCGGACAGCTTGTCCACGCCGTATGTCTCAC
GCCACTTGTTGGTCTTTAGAATGGCCTGAAATGCGTCATCTGTGGTCTTG
AAGGCGCGCAGATAGCGACGCAGCGAAAAGTCATTGTGATACTGCTTTGG
ATCCGCCTCCACAATCAATTTCATGCGCTCCTTGAGATCCTTGAAGTCCT
GCTCGTTAATTGGCGCCAGCTCCTCGGACGACATGTCGACTGATAACT

BO06936.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 669 CG32485-RA 1..666 684..19 3330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1136 CG32485-RA 217..882 684..19 3330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051511 528..19 2550 100 Minus
3L 28110227 3L 3050539..3050698 684..525 800 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:28:56 has no hits.

BO06936.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:13 Download gff for BO06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 15..684 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:40 Download gff for BO06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 15..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:50 Download gff for BO06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 11..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:53 Download gff for BO06936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 11..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:53 Download gff for BO06936.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3050539..3050697 526..684 100 -> Minus
3L 3051005..3051519 11..525 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:50 Download gff for BO06936.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050539..3050697 526..684 100 -> Minus
arm_3L 3051005..3051519 11..525 99   Minus

BO06936.5prime Sequence

698 bp (697 high quality bases) assembled on 2005-12-03

> BO06936.5prime
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGGCAAGCTTTCTAGACC

BO06936.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 669 CG32485-RA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1136 CG32485-RA 217..882 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051511 173..682 2550 100 Plus
3L 28110227 3L 3050539..3050698 17..176 800 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:49:12 has no hits.

BO06936.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:14 Download gff for BO06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 17..686 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:41 Download gff for BO06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:30 Download gff for BO06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 17..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:15 Download gff for BO06936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:15 Download gff for BO06936.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3050539..3050697 17..175 100 -> Plus
3L 3051005..3051519 176..690 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:30 Download gff for BO06936.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050539..3050697 17..175 100 -> Plus
arm_3L 3051005..3051519 176..690 99   Plus

BO06936.complete Sequence

700 bp (700 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630600

> BO06936.complete
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGGCAAGCTTTCTAGACCAT

BO06936.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 669 CG32485-PA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1136 CG32485-RA 217..882 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051511 173..682 2550 100 Plus
3L 28110227 3L 3050539..3050698 17..176 800 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:03:00 has no hits.

BO06936.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:46 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:34 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 211..884 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:32 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..882 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:46 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 211..884 17..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:46 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..882 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:46 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3050539..3050697 17..175 100 -> Plus
3L 3051005..3051511 176..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:32 Download gff for BO06936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050539..3050697 17..175 100 -> Plus
arm_3L 3051005..3051511 176..684 99   Plus

BO06936.pep Sequence

Translation from 16 to 700

> BO06936.pep
MSSEELAPINEQDFKDLKERMKLIVEADPKQYHNDFSLRRYLRAFKTTDD
AFQAILKTNKWRETYGVDKLSEMDRSQLDKKARLLRHRDCIGRPVIYIPA
KNHSSERDIDELTRFIVYNLEEACKKCFEEVTDRLCIVFDLAEFSTSCMD
YQLVQNLIWLLGKHFPERLGVCLIINSPGLFSTIWPAIRVLLDDNTAKKV
KFVADEAELCQYLIPDILPTDMASFLDH

BO06936.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 222 CG32485-PA 1..222 1..222 1167 100 Plus