Clone Sequence Records
BO06936.3prime Sequence
698 bp (697 high quality bases) assembled on 2005-12-03
> BO06936.3prime
ATGGTCTAGAAAGCTTGCCATGTCCGTTGGCAGGATGTCGGGGATGAGGT
ACTGGCACAGCTCCGCCTCGTCCGCCACAAACTTCACCTTCTTGGCCGTA
TTGTCGTCCAACAGTACACGTATGGCCGGCCAAATGGTGGAGAACAGACC
GGGCGAGTTGATGATCAGACAGACGCCCAGGCGCTCCGGAAAGTGCTTGC
CCAGCAGCCAGATGAGATTCTGCACTAGCTGATAGTCCATGCAGCTGGTG
CTGAACTCGGCCAGATCGAAGACAATGCACAGGCGGTCGGTGACCTCCTC
GAAGCACTTCTTGCACGCCTCCTCCAAATTGTAGACGATGAAGCGCGTCA
GCTCGTCGATGTCCCGCTCCGAGCTGTGATTTTTGGCCGGAATGTAGATC
ACCGGACGGCCGATGCAGTCGCGGTGGCGCAGCAGGCGCGCCTTCTTGTC
CAGCTGGCTGCGGTCCATCTCGGACAGCTTGTCCACGCCGTATGTCTCAC
GCCACTTGTTGGTCTTTAGAATGGCCTGAAATGCGTCATCTGTGGTCTTG
AAGGCGCGCAGATAGCGACGCAGCGAAAAGTCATTGTGATACTGCTTTGG
ATCCGCCTCCACAATCAATTTCATGCGCTCCTTGAGATCCTTGAAGTCCT
GCTCGTTAATTGGCGCCAGCTCCTCGGACGACATGTCGACTGATAACT
BO06936.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-PA | 669 | CG32485-RA | 1..666 | 684..19 | 3330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 1136 | CG32485-RA | 217..882 | 684..19 | 3330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3051002..3051511 | 528..19 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 3050539..3050698 | 684..525 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:28:56 has no hits.
BO06936.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:13 Download gff for
BO06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:40 Download gff for
BO06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:50 Download gff for
BO06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 11..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:53 Download gff for
BO06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 11..684 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:53 Download gff for
BO06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3050539..3050697 | 526..684 | 100 | -> | Minus |
3L | 3051005..3051519 | 11..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:50 Download gff for
BO06936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3050539..3050697 | 526..684 | 100 | -> | Minus |
arm_3L | 3051005..3051519 | 11..525 | 99 | | Minus |
BO06936.5prime Sequence
698 bp (697 high quality bases) assembled on 2005-12-03
> BO06936.5prime
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGGCAAGCTTTCTAGACC
BO06936.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-PA | 669 | CG32485-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 1136 | CG32485-RA | 217..882 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3051002..3051511 | 173..682 | 2550 | 100 | Plus |
3L | 28110227 | 3L | 3050539..3050698 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:49:12 has no hits.
BO06936.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:14 Download gff for
BO06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:41 Download gff for
BO06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:30 Download gff for
BO06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:15 Download gff for
BO06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:15 Download gff for
BO06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
3L | 3051005..3051519 | 176..690 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:30 Download gff for
BO06936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
arm_3L | 3051005..3051519 | 176..690 | 99 | | Plus |
BO06936.complete Sequence
700 bp (700 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630600
> BO06936.complete
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGGCAAGCTTTCTAGACCAT
BO06936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 669 | CG32485-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 1136 | CG32485-RA | 217..882 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3051002..3051511 | 173..682 | 2550 | 100 | Plus |
3L | 28110227 | 3L | 3050539..3050698 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:00 has no hits.
BO06936.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:46 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:34 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 211..884 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:32 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..882 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:46 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 211..884 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:46 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..882 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:46 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
3L | 3051005..3051511 | 176..684 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:32 Download gff for
BO06936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
arm_3L | 3051005..3051511 | 176..684 | 99 | | Plus |
BO06936.pep Sequence
Translation from 16 to 700
> BO06936.pep
MSSEELAPINEQDFKDLKERMKLIVEADPKQYHNDFSLRRYLRAFKTTDD
AFQAILKTNKWRETYGVDKLSEMDRSQLDKKARLLRHRDCIGRPVIYIPA
KNHSSERDIDELTRFIVYNLEEACKKCFEEVTDRLCIVFDLAEFSTSCMD
YQLVQNLIWLLGKHFPERLGVCLIINSPGLFSTIWPAIRVLLDDNTAKKV
KFVADEAELCQYLIPDILPTDMASFLDH
BO06936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-PA | 222 | CG32485-PA | 1..222 | 1..222 | 1167 | 100 | Plus |