Clone Sequence Records
BO06941.3prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06941.3prime
ATGGTCTAGAAAGCTTGCAAGACGCCATCGTTTTGAGACCGGAATCTCTG
CATTGCCGAGTCGATCTGCAGACCTGGTATTTCGCATCTGTGCACCCGAC
TTTTCAGGCGAACTCTTCTTGGTCTTCGTCTTGCTCAGCGTACTGGCATC
CTTAGCTGTAGATTCTGCCCTTCTGGGAGAGAGGGGTTGTCGCTTCAACT
GAGTGGAACTGGTCTTGCCGAGCTTTGGCTGAGCACGGAATGATCCCTGC
CCGGCTACTTTCCTTTTGCGAGGCTGAATGACGACCGTCTTGGAGGAATT
GGCACTGGTCTTCTTGCTGGACAGGGAGTGCCTTGGCGACACGGTCTTGG
TCTTGCCTCGTCCATGGGACATCTTCTCCACCAGCTTCTTAATTGCGTTC
TTCTCGCTCGGTGGCTGGATCTTAAGGAAAGTGTGTTTCTGGGTCAAATG
CGCGGCAGTAATGGCATTTGCCGCTGGCGGAGACATCAATTCCAGTGTTT
CTGGCAAGGGAAACTCCATCGGACTTGGTTTGTATTTGAAAGGTTTCTTT
CCGTCGGCAGCTCCACGTGCTGCTTTAGGCCGACGAACTGGCGGAAGATT
TCCATTCAGTTCCCTGCGCAGCCTGATGTGACGTTCCACCATCAAATCGA
AGATGGAGACTATCGGGGTATTCAGCATGGACGTCATGTCGACTGATAAC
T
BO06941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-PA | 672 | CG8838-RA | 1..669 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-RA | 973 | CG8838-RA | 105..773 | 687..19 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3357750..3358418 | 687..19 | 3345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:28:47 has no hits.
BO06941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:20 Download gff for
BO06941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:50 Download gff for
BO06941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:49 Download gff for
BO06941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 101..780 | 13..695 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:36 Download gff for
BO06941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 101..780 | 13..695 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:36 Download gff for
BO06941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3357746..3358423 | 14..695 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:49 Download gff for
BO06941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3357746..3358423 | 14..695 | 98 | -> | Minus |
BO06941.5prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06941.5prime
GAAGTTATCAGTCGACATGACGTCCATGCTGAATACCCCGATAGTCTCCA
TCTTCGATTTGATGGTGGAACGTCACATCAGGCTGCGCAGGGAACTGAAT
GGAAATCTTCCGCCAGTTCGTCGGCCTAAAGCAGCACGTGGAGCTGCCGA
CGGAAAGAAACCTTTCAAATACAAACCAAGTCCGATGGAGTTTCCCTTGC
CAGAAACACTGGAATTGATGTCTCCGCCAGCGGCAAATGCCATTACTGCC
GCGCATTTGACCCAGAAACACACTTTCCTTAAGATCCAGCCACCGAGCGA
GAAGAACGCAATTAAGAAGCTGGTGGAGAAGATGTCCCATGGACGAGGCA
AGACCAAGACCGTGTCGCCAAGGCACTCCCTGTCCAGCAAGAAGACCAGT
GCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGC
CGGGCAGGGATCATTCCGTGCTCAGCCAAAGCTCGGCAAGACCAGTTCCA
CTCAGTTGAAGCGACAACCCCTCTCTCCCAGAAGGGCAGAATCTACAGCT
AAGGATGCCAGTACGCTGAGCAAGACGAAGACCAAGAAGAGTTCGCCTGA
AAAGTCGGGTGCACAGATGCGAAATACCAGGTCTGCAGATCGACTCGGCA
ATGCAGAGATTCCGGTCTCAAAACGATGGCGTCTTGCAAGCTTTCTAGAC
C
BO06941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-PA | 672 | CG8838-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-RA | 973 | CG8838-RA | 105..773 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3357750..3358418 | 17..685 | 3345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:51:30 has no hits.
BO06941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:21 Download gff for
BO06941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:52 Download gff for
BO06941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:35 Download gff for
BO06941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 101..780 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:54 Download gff for
BO06941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 101..780 | 9..691 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:54 Download gff for
BO06941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3357746..3358423 | 9..690 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:35 Download gff for
BO06941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3357746..3358423 | 9..690 | 98 | -> | Plus |
BO06941.complete Sequence
703 bp (703 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630601
> BO06941.complete
GAAGTTATCAGTCGACATGACGTCCATGCTGAATACCCCGATAGTCTCCA
TCTTCGATTTGATGGTGGAACGTCACATCAGGCTGCGCAGGGAACTGAAT
GGAAATCTTCCGCCAGTTCGTCGGCCTAAAGCAGCACGTGGAGCTGCCGA
CGGAAAGAAACCTTTCAAATACAAACCAAGTCCGATGGAGTTTCCCTTGC
CAGAAACACTGGAATTGATGTCTCCGCCAGCGGCAAATGCCATTACTGCC
GCGCATTTGACCCAGAAACACACTTTCCTTAAGATCCAGCCACCGAGCGA
GAAGAACGCAATTAAGAAGCTGGTGGAGAAGATGTCCCATGGACGAGGCA
AGACCAAGACCGTGTCGCCAAGGCACTCCCTGTCCAGCAAGAAGACCAGT
GCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGC
CGGGCAGGGATCATTCCGTGCTCAGCCAAAGCTCGGCAAGACCAGTTCCA
CTCAGTTGAAGCGACAACCCCTCTCTCCCAGAAGGGCAGAATCTACAGCT
AAGGATGCCAGTACGCTGAGCAAGACGAAGACCAAGAAGAGTTCGCCTGA
AAAGTCGGGTGCACAGATGCGAAATACCAGGTCTGCAGATCGACTCGGCA
ATGCAGAGATTCCGGTCTCAAAACGATGGCGTCTTGCAAGCTTTCTAGAC
CAT
BO06941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-RA | 672 | CG8838-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-RA | 973 | CG8838-RA | 105..773 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3357750..3358418 | 17..685 | 3345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:46:49 has no hits.
BO06941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:47 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:36 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 63..742 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:09 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 105..773 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:47 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 63..742 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:23 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8838-RA | 105..773 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:23 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3357750..3358418 | 17..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:09 Download gff for
BO06941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3357750..3358418 | 17..687 | 99 | | Plus |
BO06941.pep Sequence
Translation from 16 to 703
> BO06941.pep
MTSMLNTPIVSIFDLMVERHIRLRRELNGNLPPVRRPKAARGAADGKKPF
KYKPSPMEFPLPETLELMSPPAANAITAAHLTQKHTFLKIQPPSEKNAIK
KLVEKMSHGRGKTKTVSPRHSLSSKKTSANSSKTVVIQPRKRKVAGQGSF
RAQPKLGKTSSTQLKRQPLSPRRAESTAKDASTLSKTKTKKSSPEKSGAQ
MRNTRSADRLGNAEIPVSKRWRLASFLDH
BO06941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8838-PA | 223 | CG8838-PA | 1..223 | 1..223 | 1126 | 100 | Plus |