Clone BO06941 Report

Search the DGRC for BO06941

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG8838-RA
Protein status:BO06941.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO06941.3prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-03

> BO06941.3prime
ATGGTCTAGAAAGCTTGCAAGACGCCATCGTTTTGAGACCGGAATCTCTG
CATTGCCGAGTCGATCTGCAGACCTGGTATTTCGCATCTGTGCACCCGAC
TTTTCAGGCGAACTCTTCTTGGTCTTCGTCTTGCTCAGCGTACTGGCATC
CTTAGCTGTAGATTCTGCCCTTCTGGGAGAGAGGGGTTGTCGCTTCAACT
GAGTGGAACTGGTCTTGCCGAGCTTTGGCTGAGCACGGAATGATCCCTGC
CCGGCTACTTTCCTTTTGCGAGGCTGAATGACGACCGTCTTGGAGGAATT
GGCACTGGTCTTCTTGCTGGACAGGGAGTGCCTTGGCGACACGGTCTTGG
TCTTGCCTCGTCCATGGGACATCTTCTCCACCAGCTTCTTAATTGCGTTC
TTCTCGCTCGGTGGCTGGATCTTAAGGAAAGTGTGTTTCTGGGTCAAATG
CGCGGCAGTAATGGCATTTGCCGCTGGCGGAGACATCAATTCCAGTGTTT
CTGGCAAGGGAAACTCCATCGGACTTGGTTTGTATTTGAAAGGTTTCTTT
CCGTCGGCAGCTCCACGTGCTGCTTTAGGCCGACGAACTGGCGGAAGATT
TCCATTCAGTTCCCTGCGCAGCCTGATGTGACGTTCCACCATCAAATCGA
AGATGGAGACTATCGGGGTATTCAGCATGGACGTCATGTCGACTGATAAC
T

BO06941.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-PA 672 CG8838-RA 1..669 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-RA 973 CG8838-RA 105..773 687..19 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3357750..3358418 687..19 3345 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:28:47 has no hits.

BO06941.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:20 Download gff for BO06941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:50 Download gff for BO06941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:49 Download gff for BO06941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 101..780 13..695 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:36 Download gff for BO06941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 101..780 13..695 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:36 Download gff for BO06941.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3357746..3358423 14..695 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:49 Download gff for BO06941.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3357746..3358423 14..695 98 -> Minus

BO06941.5prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-03

> BO06941.5prime
GAAGTTATCAGTCGACATGACGTCCATGCTGAATACCCCGATAGTCTCCA
TCTTCGATTTGATGGTGGAACGTCACATCAGGCTGCGCAGGGAACTGAAT
GGAAATCTTCCGCCAGTTCGTCGGCCTAAAGCAGCACGTGGAGCTGCCGA
CGGAAAGAAACCTTTCAAATACAAACCAAGTCCGATGGAGTTTCCCTTGC
CAGAAACACTGGAATTGATGTCTCCGCCAGCGGCAAATGCCATTACTGCC
GCGCATTTGACCCAGAAACACACTTTCCTTAAGATCCAGCCACCGAGCGA
GAAGAACGCAATTAAGAAGCTGGTGGAGAAGATGTCCCATGGACGAGGCA
AGACCAAGACCGTGTCGCCAAGGCACTCCCTGTCCAGCAAGAAGACCAGT
GCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGC
CGGGCAGGGATCATTCCGTGCTCAGCCAAAGCTCGGCAAGACCAGTTCCA
CTCAGTTGAAGCGACAACCCCTCTCTCCCAGAAGGGCAGAATCTACAGCT
AAGGATGCCAGTACGCTGAGCAAGACGAAGACCAAGAAGAGTTCGCCTGA
AAAGTCGGGTGCACAGATGCGAAATACCAGGTCTGCAGATCGACTCGGCA
ATGCAGAGATTCCGGTCTCAAAACGATGGCGTCTTGCAAGCTTTCTAGAC
C

BO06941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-PA 672 CG8838-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-RA 973 CG8838-RA 105..773 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3357750..3358418 17..685 3345 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:51:30 has no hits.

BO06941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:21 Download gff for BO06941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:41:52 Download gff for BO06941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:35 Download gff for BO06941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 101..780 9..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:54 Download gff for BO06941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 101..780 9..691 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:54 Download gff for BO06941.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3357746..3358423 9..690 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:35 Download gff for BO06941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3357746..3358423 9..690 98 -> Plus

BO06941.complete Sequence

703 bp (703 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630601

> BO06941.complete
GAAGTTATCAGTCGACATGACGTCCATGCTGAATACCCCGATAGTCTCCA
TCTTCGATTTGATGGTGGAACGTCACATCAGGCTGCGCAGGGAACTGAAT
GGAAATCTTCCGCCAGTTCGTCGGCCTAAAGCAGCACGTGGAGCTGCCGA
CGGAAAGAAACCTTTCAAATACAAACCAAGTCCGATGGAGTTTCCCTTGC
CAGAAACACTGGAATTGATGTCTCCGCCAGCGGCAAATGCCATTACTGCC
GCGCATTTGACCCAGAAACACACTTTCCTTAAGATCCAGCCACCGAGCGA
GAAGAACGCAATTAAGAAGCTGGTGGAGAAGATGTCCCATGGACGAGGCA
AGACCAAGACCGTGTCGCCAAGGCACTCCCTGTCCAGCAAGAAGACCAGT
GCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGC
CGGGCAGGGATCATTCCGTGCTCAGCCAAAGCTCGGCAAGACCAGTTCCA
CTCAGTTGAAGCGACAACCCCTCTCTCCCAGAAGGGCAGAATCTACAGCT
AAGGATGCCAGTACGCTGAGCAAGACGAAGACCAAGAAGAGTTCGCCTGA
AAAGTCGGGTGCACAGATGCGAAATACCAGGTCTGCAGATCGACTCGGCA
ATGCAGAGATTCCGGTCTCAAAACGATGGCGTCTTGCAAGCTTTCTAGAC
CAT

BO06941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-RA 672 CG8838-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-RA 973 CG8838-RA 105..773 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3357750..3358418 17..685 3345 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:46:49 has no hits.

BO06941.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:47 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:36 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 63..742 9..691 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:09 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 105..773 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:47 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 63..742 9..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:23 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
CG8838-RA 105..773 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:23 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3357750..3358418 17..687 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:09 Download gff for BO06941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3357750..3358418 17..687 99   Plus

BO06941.pep Sequence

Translation from 16 to 703

> BO06941.pep
MTSMLNTPIVSIFDLMVERHIRLRRELNGNLPPVRRPKAARGAADGKKPF
KYKPSPMEFPLPETLELMSPPAANAITAAHLTQKHTFLKIQPPSEKNAIK
KLVEKMSHGRGKTKTVSPRHSLSSKKTSANSSKTVVIQPRKRKVAGQGSF
RAQPKLGKTSSTQLKRQPLSPRRAESTAKDASTLSKTKTKKSSPEKSGAQ
MRNTRSADRLGNAEIPVSKRWRLASFLDH

BO06941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8838-PA 223 CG8838-PA 1..223 1..223 1126 100 Plus