Clone BO06947 Report

Search the DGRC for BO06947

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10750-RA
Protein status:BO06947.pep: validated full length
Sequenced Size:1027

Clone Sequence Records

BO06947.3prime Sequence

883 bp (873 high quality bases) assembled on 2005-12-03

> BO06947.3prime
ATGGTCTAGAAAGCTTGCGCACATACGTCCAGCGCCGACTTTATCGCCCT
TATTGGACTCCAATTCCTGGAGGACCGATGAAAGAAGACTTATTTCGCGC
ATGATGAAGCTCATGATTTTGTCGATCTCATAGCTGTGGTAGCTGGGAAC
AATGTCTCGACGTTTGCAGAGCATGCGGTACAGGATTTGAATGCCATCAA
ACATGCGCTCCTTGTCCAGGTTGTAGAGCGACGTGGTGTCCTTGCAGGCA
CTTAGTATCTTTTCCCACTTGAGGCAAGTGGCCCGCGAGCTGACATAGGA
ACGATCCAAACGGGCCAGATCGTTTTTGAGGCCCAAAACGGTCAAGGCCG
CCTCGCTGGTGATCTGAACCATTCGCAGGCGCATCTCCTCGATCTCGTTG
AGTTTCTGGCTCTCCAGCTTATTGATCTCCACCTGGGCCAACATTAGAGC
GTCACATCGATCGATGCAGTCTTTCGTTGAGATGAAGATGTCCGACACCT
CGACTACCTCCTCCAGGACCCTCTCGTATGGCTGAAACTGAGCCACCGTG
GCCTTGAGCGCATTGCGAAAGGTGCTCAGTTCGGCAATGGAGGTCTTGAA
CTCGTCTATCTCCTTGGTGACCTCCGCGTGGAGAACGGTCTCCTCGCGAA
TCGACTTATCCGCACTGCGCTTTTTGTCCGCACAATCCTTGATGAATCCA
TTCACCTCGACGAAGCGTTTGCGCAGGCGCTCCTGAATCTTGTACATCTT
GCGAATGCGCTGCACATTTAATGCGGCTTGCCGCTTGGCATCTTTGAGTA
GCTGGATCTGAACCTGCTTCATGGCGTCGTACTCCCGGAGATTGGCTATG
TACAGCATCTCGATGTTATCCCCGGCCCGATCC

BO06947.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-PA 996 CG10750-RA 135..993 877..19 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 1175 CG10750-RA 253..1111 877..19 4295 100 Minus
CG10750-RB 1175 CG10750-RB 253..1111 877..19 4265 99.8 Minus
CG17564-RB 1305 CG17564-RB 471..905 747..313 420 74 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19300569..19301002 877..444 2170 100 Minus
2L 23513712 2L 19301058..19301345 443..156 1440 100 Minus
2L 23513712 2L 19301398..19301536 157..19 695 100 Minus
2L 23513712 2L 19298996..19299291 452..747 220 71.6 Plus
Blast to na_te.dros performed on 2015-02-13 05:24:10 has no hits.

BO06947.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:33 Download gff for BO06947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 129..996 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:08 Download gff for BO06947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 129..996 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:55 Download gff for BO06947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 247..1111 19..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:21 Download gff for BO06947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 247..1111 19..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:21 Download gff for BO06947.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19300563..19301002 444..883 99 -> Minus
2L 19301058..19301345 156..443 100 -> Minus
2L 19301400..19301536 19..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:55 Download gff for BO06947.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19300563..19301002 444..883 99 -> Minus
arm_2L 19301058..19301345 156..443 100 -> Minus
arm_2L 19301400..19301536 19..155 100   Minus

BO06947.5prime Sequence

928 bp (837 high quality bases) assembled on 2005-12-03

> BO06947.5prime
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCNAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATG

BO06947.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-PA 996 CG10750-RA 1..912 17..928 4541 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 1175 CG10750-RA 119..1030 17..928 4549 99.9 Plus
CG10750-RB 1175 CG10750-RB 119..1030 17..928 4519 99.7 Plus
CG17564-RB 1305 CG17564-RB 471..905 281..715 420 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19300548..19301002 130..584 2275 100 Plus
2L 23513712 2L 19301058..19301345 585..872 1429 99.7 Plus
2L 23513712 2L 19300373..19300486 17..130 570 100 Plus
2L 23513712 2L 19301398..19301455 871..928 290 100 Plus
2L 23513712 2L 19298996..19299291 576..281 220 71.6 Minus
Blast to na_te.dros performed on 2015-02-11 23:10:00 has no hits.

BO06947.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:34 Download gff for BO06947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:09 Download gff for BO06947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:04 Download gff for BO06947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1030 17..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:11 Download gff for BO06947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1030 17..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:11 Download gff for BO06947.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19300373..19300485 17..129 100 -> Plus
2L 19300548..19301002 130..584 100 -> Plus
2L 19301058..19301345 585..872 99 -> Plus
2L 19301400..19301455 873..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:04 Download gff for BO06947.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19300373..19300485 17..129 100 -> Plus
arm_2L 19300548..19301002 130..584 100 -> Plus
arm_2L 19301058..19301345 585..872 99 -> Plus
arm_2L 19301400..19301455 873..928 100   Plus

BO06947.complete Sequence

1027 bp (1027 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630602

> BO06947.complete
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCAT
CGGTCCTCCAGGAATTGGAGTCCAATAAGGGCGATAAAGTCGGCGCTGGA
CGTATGTGCGCAAGCTTTCTAGACCAT

BO06947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 996 CG10750-PA 1..993 17..1009 4965 100 Plus
CG10750-RB 996 CG10750-PB 1..993 17..1009 4935 99.8 Plus
CG17564-RB 1008 CG17564-PB 265..699 281..715 390 72.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 1175 CG10750-RA 119..1111 17..1009 4965 100 Plus
CG10750-RB 1175 CG10750-RB 119..1111 17..1009 4935 99.8 Plus
CG17564-RB 1305 CG17564-RB 471..905 281..715 390 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19300548..19301002 130..584 2275 100 Plus
2L 23513712 2L 19301058..19301345 585..872 1440 100 Plus
2L 23513712 2L 19301398..19301536 871..1009 695 100 Plus
2L 23513712 2L 19300373..19300486 17..130 570 100 Plus
2L 23513712 2L 19298996..19299291 576..281 220 71.6 Minus
Blast to na_te.dros performed on 2014-11-26 15:52:23 has no hits.

BO06947.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:48 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 1..996 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:38 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 68..1060 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:27 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1111 17..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:48 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 68..1060 17..1009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:48 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1111 17..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:48 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19300373..19300485 17..129 100 -> Plus
2L 19300548..19301002 130..584 100 -> Plus
2L 19301058..19301345 585..872 100 -> Plus
2L 19301400..19301536 873..1011 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:27 Download gff for BO06947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19300373..19300485 17..129 100 -> Plus
arm_2L 19300548..19301002 130..584 100 -> Plus
arm_2L 19301058..19301345 585..872 100 -> Plus
arm_2L 19301400..19301536 873..1011 98   Plus

BO06947.pep Sequence

Translation from 16 to 1027

> BO06947.pep
MPRRKPTIKTDVIGDLDLSPEVAIDDYRVSRQQDQFFVKPPNWDSAGDNI
EMLYIANLREYDAMKQVQIQLLKDAKRQAALNVQRIRKMYKIQERLRKRF
VEVNGFIKDCADKKRSADKSIREETVLHAEVTKEIDEFKTSIAELSTFRN
ALKATVAQFQPYERVLEEVVEVSDIFISTKDCIDRCDALMLAQVEINKLE
SQKLNEIEEMRLRMVQITSEAALTVLGLKNDLARLDRSYVSSRATCLKWE
KILSACKDTTSLYNLDKERMFDGIQILYRMLCKRRDIVPSYHSYEIDKIM
SFIMREISLLSSVLQELESNKGDKVGAGRMCASFLDH

BO06947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-PA 331 CG10750-PA 1..331 1..331 1665 100 Plus
CG10750-PB 331 CG10750-PB 1..331 1..331 1658 99.7 Plus
CG17564-PB 335 CG17564-PB 1..320 1..320 993 60.9 Plus