Clone Sequence Records
BO06947.3prime Sequence
883 bp (873 high quality bases) assembled on 2005-12-03
> BO06947.3prime
ATGGTCTAGAAAGCTTGCGCACATACGTCCAGCGCCGACTTTATCGCCCT
TATTGGACTCCAATTCCTGGAGGACCGATGAAAGAAGACTTATTTCGCGC
ATGATGAAGCTCATGATTTTGTCGATCTCATAGCTGTGGTAGCTGGGAAC
AATGTCTCGACGTTTGCAGAGCATGCGGTACAGGATTTGAATGCCATCAA
ACATGCGCTCCTTGTCCAGGTTGTAGAGCGACGTGGTGTCCTTGCAGGCA
CTTAGTATCTTTTCCCACTTGAGGCAAGTGGCCCGCGAGCTGACATAGGA
ACGATCCAAACGGGCCAGATCGTTTTTGAGGCCCAAAACGGTCAAGGCCG
CCTCGCTGGTGATCTGAACCATTCGCAGGCGCATCTCCTCGATCTCGTTG
AGTTTCTGGCTCTCCAGCTTATTGATCTCCACCTGGGCCAACATTAGAGC
GTCACATCGATCGATGCAGTCTTTCGTTGAGATGAAGATGTCCGACACCT
CGACTACCTCCTCCAGGACCCTCTCGTATGGCTGAAACTGAGCCACCGTG
GCCTTGAGCGCATTGCGAAAGGTGCTCAGTTCGGCAATGGAGGTCTTGAA
CTCGTCTATCTCCTTGGTGACCTCCGCGTGGAGAACGGTCTCCTCGCGAA
TCGACTTATCCGCACTGCGCTTTTTGTCCGCACAATCCTTGATGAATCCA
TTCACCTCGACGAAGCGTTTGCGCAGGCGCTCCTGAATCTTGTACATCTT
GCGAATGCGCTGCACATTTAATGCGGCTTGCCGCTTGGCATCTTTGAGTA
GCTGGATCTGAACCTGCTTCATGGCGTCGTACTCCCGGAGATTGGCTATG
TACAGCATCTCGATGTTATCCCCGGCCCGATCC
BO06947.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-PA | 996 | CG10750-RA | 135..993 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 1175 | CG10750-RA | 253..1111 | 877..19 | 4295 | 100 | Minus |
CG10750-RB | 1175 | CG10750-RB | 253..1111 | 877..19 | 4265 | 99.8 | Minus |
CG17564-RB | 1305 | CG17564-RB | 471..905 | 747..313 | 420 | 74 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19300569..19301002 | 877..444 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 19301058..19301345 | 443..156 | 1440 | 100 | Minus |
2L | 23513712 | 2L | 19301398..19301536 | 157..19 | 695 | 100 | Minus |
2L | 23513712 | 2L | 19298996..19299291 | 452..747 | 220 | 71.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:24:10 has no hits.
BO06947.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:33 Download gff for
BO06947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 129..996 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:08 Download gff for
BO06947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 129..996 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:55 Download gff for
BO06947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 247..1111 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:21 Download gff for
BO06947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 247..1111 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:21 Download gff for
BO06947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19300563..19301002 | 444..883 | 99 | -> | Minus |
2L | 19301058..19301345 | 156..443 | 100 | -> | Minus |
2L | 19301400..19301536 | 19..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:55 Download gff for
BO06947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19300563..19301002 | 444..883 | 99 | -> | Minus |
arm_2L | 19301058..19301345 | 156..443 | 100 | -> | Minus |
arm_2L | 19301400..19301536 | 19..155 | 100 | | Minus |
BO06947.5prime Sequence
928 bp (837 high quality bases) assembled on 2005-12-03
> BO06947.5prime
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCNAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATG
BO06947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-PA | 996 | CG10750-RA | 1..912 | 17..928 | 4541 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 1175 | CG10750-RA | 119..1030 | 17..928 | 4549 | 99.9 | Plus |
CG10750-RB | 1175 | CG10750-RB | 119..1030 | 17..928 | 4519 | 99.7 | Plus |
CG17564-RB | 1305 | CG17564-RB | 471..905 | 281..715 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19300548..19301002 | 130..584 | 2275 | 100 | Plus |
2L | 23513712 | 2L | 19301058..19301345 | 585..872 | 1429 | 99.7 | Plus |
2L | 23513712 | 2L | 19300373..19300486 | 17..130 | 570 | 100 | Plus |
2L | 23513712 | 2L | 19301398..19301455 | 871..928 | 290 | 100 | Plus |
2L | 23513712 | 2L | 19298996..19299291 | 576..281 | 220 | 71.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:10:00 has no hits.
BO06947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:34 Download gff for
BO06947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:09 Download gff for
BO06947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:04 Download gff for
BO06947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1030 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:11 Download gff for
BO06947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1030 | 17..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:11 Download gff for
BO06947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
2L | 19301058..19301345 | 585..872 | 99 | -> | Plus |
2L | 19301400..19301455 | 873..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:04 Download gff for
BO06947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
arm_2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
arm_2L | 19301058..19301345 | 585..872 | 99 | -> | Plus |
arm_2L | 19301400..19301455 | 873..928 | 100 | | Plus |
BO06947.complete Sequence
1027 bp (1027 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630602
> BO06947.complete
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCAT
CGGTCCTCCAGGAATTGGAGTCCAATAAGGGCGATAAAGTCGGCGCTGGA
CGTATGTGCGCAAGCTTTCTAGACCAT
BO06947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 996 | CG10750-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
CG10750-RB | 996 | CG10750-PB | 1..993 | 17..1009 | 4935 | 99.8 | Plus |
CG17564-RB | 1008 | CG17564-PB | 265..699 | 281..715 | 390 | 72.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 1175 | CG10750-RA | 119..1111 | 17..1009 | 4965 | 100 | Plus |
CG10750-RB | 1175 | CG10750-RB | 119..1111 | 17..1009 | 4935 | 99.8 | Plus |
CG17564-RB | 1305 | CG17564-RB | 471..905 | 281..715 | 390 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19300548..19301002 | 130..584 | 2275 | 100 | Plus |
2L | 23513712 | 2L | 19301058..19301345 | 585..872 | 1440 | 100 | Plus |
2L | 23513712 | 2L | 19301398..19301536 | 871..1009 | 695 | 100 | Plus |
2L | 23513712 | 2L | 19300373..19300486 | 17..130 | 570 | 100 | Plus |
2L | 23513712 | 2L | 19298996..19299291 | 576..281 | 220 | 71.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:23 has no hits.
BO06947.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:48 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 1..996 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:38 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 68..1060 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:27 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1111 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:48 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 68..1060 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:48 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1111 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:48 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
2L | 19301058..19301345 | 585..872 | 100 | -> | Plus |
2L | 19301400..19301536 | 873..1011 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:27 Download gff for
BO06947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
arm_2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
arm_2L | 19301058..19301345 | 585..872 | 100 | -> | Plus |
arm_2L | 19301400..19301536 | 873..1011 | 98 | | Plus |
BO06947.pep Sequence
Translation from 16 to 1027
> BO06947.pep
MPRRKPTIKTDVIGDLDLSPEVAIDDYRVSRQQDQFFVKPPNWDSAGDNI
EMLYIANLREYDAMKQVQIQLLKDAKRQAALNVQRIRKMYKIQERLRKRF
VEVNGFIKDCADKKRSADKSIREETVLHAEVTKEIDEFKTSIAELSTFRN
ALKATVAQFQPYERVLEEVVEVSDIFISTKDCIDRCDALMLAQVEINKLE
SQKLNEIEEMRLRMVQITSEAALTVLGLKNDLARLDRSYVSSRATCLKWE
KILSACKDTTSLYNLDKERMFDGIQILYRMLCKRRDIVPSYHSYEIDKIM
SFIMREISLLSSVLQELESNKGDKVGAGRMCASFLDH
BO06947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-PA | 331 | CG10750-PA | 1..331 | 1..331 | 1665 | 100 | Plus |
CG10750-PB | 331 | CG10750-PB | 1..331 | 1..331 | 1658 | 99.7 | Plus |
CG17564-PB | 335 | CG17564-PB | 1..320 | 1..320 | 993 | 60.9 | Plus |