Clone BO06950 Report

Search the DGRC for BO06950

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG4729-RD
Protein status:BO06950.pep: validated not full length
Sequenced Size:463

Clone Sequence Records

BO06950.3prime Sequence

461 bp (460 high quality bases) assembled on 2005-12-03

> BO06950.3prime
ATGGTCTAGAAAGCTTGCCTTTGCGACCGACTTGGAGGATCCATAATTAG
ATGCCTTGCTGATCTGCGTCTTGTTGATGGCCTGACCCATGAGCCAGTAA
AAAAGTCCCAGGACGGAAAGTGCGGTGATAAAGGCCGTCCAGTTGGCCGC
CAGCAGGGATGTGATCACGTAGTAGAAAATGCAGGACAGAGAGAATACCG
CCCAGCAGACAAAGTTCACGAGTGAGCACAGCCGGCGTTTATTCACATAT
GCCGGAACCTCCTTTATGCCGGACGTCTTAAAGAAGCTGCCCGTCTCCAG
GAAGCTATCGATGATCTTGTCCTTCTCCACGAACAGGTTCTGCAGCCAGG
CGGCCGCCTCCTTCTCATCCTCCGGAACCTGTTCCAGTGGAATACGCCTC
ATCAGCAGGTGCGGTTCCACGCTCTTTCCATGCAGCAAACTCAGCATGTC
GACTGATAACT

BO06950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PA 1161 CG4729-RA 730..1158 447..19 2145 100 Minus
CG4729-PC 1161 CG4729-RC 730..1158 447..19 2145 100 Minus
CG4729-PB 1161 CG4729-RB 730..1158 447..19 2145 100 Minus
CG4729-PD 432 CG4729-RD 1..429 447..19 2145 100 Minus
CG4753-PB 1143 CG4753-RB 838..886 324..276 145 91.8 Minus
CG4753-PA 1143 CG4753-RA 838..886 324..276 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 1118..1546 447..19 2145 100 Minus
CG4729-RD 845 CG4729-RD 114..542 447..19 2145 100 Minus
CG4729-RB 1672 CG4729-RB 941..1369 447..19 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382727 102..447 1730 100 Plus
3L 28110227 3L 16382075..16382157 19..101 415 100 Plus
3L 28110227 3L 16379425..16379558 257..390 325 82.8 Plus
Blast to na_te.dros performed on 2015-02-12 09:51:50 has no hits.

BO06950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:39 Download gff for BO06950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PA 730..1161 15..447 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:16 Download gff for BO06950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PD 1..432 15..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:42 Download gff for BO06950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 9..447 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:25 Download gff for BO06950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 9..447 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:25 Download gff for BO06950.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16382382..16382727 102..447 100   Plus
3L 16382067..16382157 9..101 96 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:42 Download gff for BO06950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375167..16375257 9..101 96 <- Plus
arm_3L 16375482..16375827 102..447 100   Plus

BO06950.5prime Sequence

461 bp (460 high quality bases) assembled on 2005-12-03

> BO06950.5prime
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGGCAAG
CTTTCTAGACC

BO06950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PA 1161 CG4729-RA 730..1158 17..445 2145 100 Plus
CG4729-PC 1161 CG4729-RC 730..1158 17..445 2145 100 Plus
CG4729-PB 1161 CG4729-RB 730..1158 17..445 2145 100 Plus
CG4729-PD 432 CG4729-RD 1..429 17..445 2145 100 Plus
CG4753-PB 1143 CG4753-RB 838..886 140..188 145 91.8 Plus
CG4753-PA 1143 CG4753-RA 838..886 140..188 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 1118..1546 17..445 2145 100 Plus
CG4729-RD 845 CG4729-RD 114..542 17..445 2145 100 Plus
CG4729-RB 1672 CG4729-RB 941..1369 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382727 362..17 1730 100 Minus
3L 28110227 3L 16382075..16382157 445..363 415 100 Minus
3L 28110227 3L 16379425..16379558 207..74 325 82.8 Minus
Blast to na_te.dros performed on 2015-02-11 23:43:19 has no hits.

BO06950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:40 Download gff for BO06950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PA 730..1161 17..449 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:18 Download gff for BO06950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PD 1..432 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:06 Download gff for BO06950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:07 Download gff for BO06950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:07 Download gff for BO06950.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16382067..16382157 363..455 96 <- Minus
3L 16382382..16382727 17..362 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:06 Download gff for BO06950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375167..16375257 363..455 96 <- Minus
arm_3L 16375482..16375827 17..362 100   Minus

BO06950.complete Sequence

463 bp assembled on 2007-10-17

GenBank Submission: FJ630603

> BO06950.complete
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGGCAAG
CTTTCTAGACCAT

BO06950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1194 CG4729-PE 763..1191 17..445 2145 100 Plus
CG4729-RD 432 CG4729-PD 1..429 17..445 2145 100 Plus
CG4729-RB 1161 CG4729-PB 730..1158 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 1118..1546 17..445 2145 100 Plus
CG4729-RD 845 CG4729-RD 114..542 17..445 2145 100 Plus
CG4729-RB 1672 CG4729-RB 941..1369 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382727 362..17 1730 100 Minus
3L 28110227 3L 16382075..16382157 445..363 415 100 Minus
3L 28110227 3L 16379425..16379558 207..74 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-27 13:57:50 has no hits.

BO06950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:10 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 730..1161 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:21 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:54 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1369 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:51 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1369 17..447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:14 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1369 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:14 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16382073..16382157 363..447 97 <- Minus
3L 16382382..16382727 17..362 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:54 Download gff for BO06950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375173..16375257 363..447 97 <- Minus
arm_3L 16375482..16375827 17..362 100   Minus

BO06950.pep Sequence

Translation from 16 to 463

> BO06950.pep
MLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFL
ETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLA
ANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAKASFLDH

BO06950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PD 143 CG4729-PD 1..143 1..143 734 100 Plus
CG4729-PB 386 CG4729-PB 244..386 1..143 734 100 Plus
CG4729-PC 386 CG4729-PC 244..386 1..143 734 100 Plus
CG4729-PA 386 CG4729-PA 244..386 1..143 734 100 Plus
CG4729-PE 397 CG4729-PE 255..397 1..143 734 100 Plus