Clone Sequence Records
BO06950.3prime Sequence
461 bp (460 high quality bases) assembled on 2005-12-03
> BO06950.3prime
ATGGTCTAGAAAGCTTGCCTTTGCGACCGACTTGGAGGATCCATAATTAG
ATGCCTTGCTGATCTGCGTCTTGTTGATGGCCTGACCCATGAGCCAGTAA
AAAAGTCCCAGGACGGAAAGTGCGGTGATAAAGGCCGTCCAGTTGGCCGC
CAGCAGGGATGTGATCACGTAGTAGAAAATGCAGGACAGAGAGAATACCG
CCCAGCAGACAAAGTTCACGAGTGAGCACAGCCGGCGTTTATTCACATAT
GCCGGAACCTCCTTTATGCCGGACGTCTTAAAGAAGCTGCCCGTCTCCAG
GAAGCTATCGATGATCTTGTCCTTCTCCACGAACAGGTTCTGCAGCCAGG
CGGCCGCCTCCTTCTCATCCTCCGGAACCTGTTCCAGTGGAATACGCCTC
ATCAGCAGGTGCGGTTCCACGCTCTTTCCATGCAGCAAACTCAGCATGTC
GACTGATAACT
BO06950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PA | 1161 | CG4729-RA | 730..1158 | 447..19 | 2145 | 100 | Minus |
CG4729-PC | 1161 | CG4729-RC | 730..1158 | 447..19 | 2145 | 100 | Minus |
CG4729-PB | 1161 | CG4729-RB | 730..1158 | 447..19 | 2145 | 100 | Minus |
CG4729-PD | 432 | CG4729-RD | 1..429 | 447..19 | 2145 | 100 | Minus |
CG4753-PB | 1143 | CG4753-RB | 838..886 | 324..276 | 145 | 91.8 | Minus |
CG4753-PA | 1143 | CG4753-RA | 838..886 | 324..276 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 1118..1546 | 447..19 | 2145 | 100 | Minus |
CG4729-RD | 845 | CG4729-RD | 114..542 | 447..19 | 2145 | 100 | Minus |
CG4729-RB | 1672 | CG4729-RB | 941..1369 | 447..19 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16382382..16382727 | 102..447 | 1730 | 100 | Plus |
3L | 28110227 | 3L | 16382075..16382157 | 19..101 | 415 | 100 | Plus |
3L | 28110227 | 3L | 16379425..16379558 | 257..390 | 325 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:51:50 has no hits.
BO06950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:39 Download gff for
BO06950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PA | 730..1161 | 15..447 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:16 Download gff for
BO06950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PD | 1..432 | 15..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:42 Download gff for
BO06950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 9..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:25 Download gff for
BO06950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 9..447 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:25 Download gff for
BO06950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382382..16382727 | 102..447 | 100 | | Plus |
3L | 16382067..16382157 | 9..101 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:42 Download gff for
BO06950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375167..16375257 | 9..101 | 96 | <- | Plus |
arm_3L | 16375482..16375827 | 102..447 | 100 | | Plus |
BO06950.5prime Sequence
461 bp (460 high quality bases) assembled on 2005-12-03
> BO06950.5prime
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGGCAAG
CTTTCTAGACC
BO06950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PA | 1161 | CG4729-RA | 730..1158 | 17..445 | 2145 | 100 | Plus |
CG4729-PC | 1161 | CG4729-RC | 730..1158 | 17..445 | 2145 | 100 | Plus |
CG4729-PB | 1161 | CG4729-RB | 730..1158 | 17..445 | 2145 | 100 | Plus |
CG4729-PD | 432 | CG4729-RD | 1..429 | 17..445 | 2145 | 100 | Plus |
CG4753-PB | 1143 | CG4753-RB | 838..886 | 140..188 | 145 | 91.8 | Plus |
CG4753-PA | 1143 | CG4753-RA | 838..886 | 140..188 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 1118..1546 | 17..445 | 2145 | 100 | Plus |
CG4729-RD | 845 | CG4729-RD | 114..542 | 17..445 | 2145 | 100 | Plus |
CG4729-RB | 1672 | CG4729-RB | 941..1369 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16382382..16382727 | 362..17 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 16382075..16382157 | 445..363 | 415 | 100 | Minus |
3L | 28110227 | 3L | 16379425..16379558 | 207..74 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:43:19 has no hits.
BO06950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:40 Download gff for
BO06950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PA | 730..1161 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:18 Download gff for
BO06950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PD | 1..432 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:06 Download gff for
BO06950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:07 Download gff for
BO06950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:07 Download gff for
BO06950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382067..16382157 | 363..455 | 96 | <- | Minus |
3L | 16382382..16382727 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:06 Download gff for
BO06950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375167..16375257 | 363..455 | 96 | <- | Minus |
arm_3L | 16375482..16375827 | 17..362 | 100 | | Minus |
BO06950.complete Sequence
463 bp assembled on 2007-10-17
GenBank Submission: FJ630603
> BO06950.complete
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGGCAAG
CTTTCTAGACCAT
BO06950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1194 | CG4729-PE | 763..1191 | 17..445 | 2145 | 100 | Plus |
CG4729-RD | 432 | CG4729-PD | 1..429 | 17..445 | 2145 | 100 | Plus |
CG4729-RB | 1161 | CG4729-PB | 730..1158 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 1118..1546 | 17..445 | 2145 | 100 | Plus |
CG4729-RD | 845 | CG4729-RD | 114..542 | 17..445 | 2145 | 100 | Plus |
CG4729-RB | 1672 | CG4729-RB | 941..1369 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16382382..16382727 | 362..17 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 16382075..16382157 | 445..363 | 415 | 100 | Minus |
3L | 28110227 | 3L | 16379425..16379558 | 207..74 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:57:50 has no hits.
BO06950.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:10 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RC | 730..1161 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:21 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:54 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1369 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:51 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1369 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:14 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1369 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:14 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382073..16382157 | 363..447 | 97 | <- | Minus |
3L | 16382382..16382727 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:54 Download gff for
BO06950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375173..16375257 | 363..447 | 97 | <- | Minus |
arm_3L | 16375482..16375827 | 17..362 | 100 | | Minus |
BO06950.pep Sequence
Translation from 16 to 463
> BO06950.pep
MLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFL
ETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLA
ANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAKASFLDH
BO06950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PD | 143 | CG4729-PD | 1..143 | 1..143 | 734 | 100 | Plus |
CG4729-PB | 386 | CG4729-PB | 244..386 | 1..143 | 734 | 100 | Plus |
CG4729-PC | 386 | CG4729-PC | 244..386 | 1..143 | 734 | 100 | Plus |
CG4729-PA | 386 | CG4729-PA | 244..386 | 1..143 | 734 | 100 | Plus |
CG4729-PE | 397 | CG4729-PE | 255..397 | 1..143 | 734 | 100 | Plus |