Clone Sequence Records
BO06953.5prime Sequence
746 bp (745 high quality bases) assembled on 2005-12-03
> BO06953.5prime
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACGCAAGCTTTCTAGACC
BO06953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-PA | 717 | CG5398-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 938 | CG5398-RA | 133..846 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23602898..23603302 | 143..547 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 23603366..23603549 | 547..730 | 920 | 100 | Plus |
2R | 25286936 | 2R | 23602717..23602844 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:44:13 has no hits.
BO06953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:46 Download gff for
BO06953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:26 Download gff for
BO06953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:09 Download gff for
BO06953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:14 Download gff for
BO06953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:14 Download gff for
BO06953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23602707..23602844 | 7..144 | 97 | -> | Plus |
2R | 23602900..23603302 | 145..547 | 100 | -> | Plus |
2R | 23603367..23603555 | 548..737 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:09 Download gff for
BO06953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19490230..19490367 | 7..144 | 97 | -> | Plus |
arm_2R | 19490423..19490825 | 145..547 | 100 | -> | Plus |
arm_2R | 19490890..19491078 | 548..737 | 98 | | Plus |
BO06953.3prime Sequence
746 bp (745 high quality bases) assembled on 2005-12-03
> BO06953.3prime
ATGGTCTAGAAAGCTTGCGTTGCACACTGGAATTTCCAAGGGCTTATAAG
GTGGCGTATACGCATGATTCCACACGAAGGGCACCATGATGGCGGCCAGG
ATCTGGCCAGTCAGCTGCATTAGAACCGAATTCGGACTGCCGTAGAATAT
GGCAGGCACCAATGTCTTGGCGGGGTTCATACTGGCTCCAGTTAGTTGAA
TCCCTGCGAAACTGCAAGCGATCACGAGGAGACCCATGCGAATGGCGACC
GAGTCGAGGAACCTTCCGTTTCGCACGTCCCACAAGGAGCACCATCCGAG
CACGAGGACCGCGGTCAGCAGGCACTCGATGATGACGACCTGGTATGTGG
ACAGAGTGTCCATCGGTTGTACCAGGCAAATGCCTGGCTTGCTTTTGTCC
ACCAGCTCCTTGGGCAGCAGTTGCATTAGCAGGAAGTAACCAAGGAAAGC
ACCGGCCATCTGACACACCACGTACATCATCATCACTTCCAGGGCGATGT
AGCCCATCAAGTAGCATGAGATCGAGATGCATGGATTCGAATGGGCTCCG
GATACGAAGCCAAACACGTGCATCACCACCATCACCGTCAGGCCATAGTG
AACGCTGGCCACCAAGAATTTGCTCTCACCACCTTGGTTCGTTGAGTCTC
CCATGCAACCGAGCAAAATCAGTAGCGCAGTGGCACTGAACTCGGTGGCT
CCGCGTATAAAGGTAAAGAAGTCCCAGATCATGTCGACTGATAACT
BO06953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-PA | 717 | CG5398-RA | 1..714 | 732..19 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 938 | CG5398-RA | 133..846 | 732..19 | 3570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23602898..23603302 | 606..202 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 23603366..23603549 | 202..19 | 920 | 100 | Minus |
2R | 25286936 | 2R | 23602717..23602844 | 732..605 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:50:16 has no hits.
BO06953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:45 Download gff for
BO06953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 16..732 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:24 Download gff for
BO06953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 16..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:40 Download gff for
BO06953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 12..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:34 Download gff for
BO06953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 12..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:34 Download gff for
BO06953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23603367..23603555 | 12..201 | 98 | | Minus |
2R | 23602707..23602844 | 605..742 | 97 | -> | Minus |
2R | 23602900..23603302 | 202..604 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:40 Download gff for
BO06953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19490230..19490367 | 605..742 | 97 | -> | Minus |
arm_2R | 19490423..19490825 | 202..604 | 100 | -> | Minus |
arm_2R | 19490890..19491078 | 12..201 | 98 | | Minus |
BO06953.complete Sequence
748 bp (748 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630605
> BO06953.complete
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACGCAAGCTTTCTAGACCAT
BO06953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 717 | CG5398-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 938 | CG5398-RA | 133..846 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23602898..23603302 | 143..547 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 23603366..23603549 | 547..730 | 920 | 100 | Plus |
2R | 25286936 | 2R | 23602717..23602844 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:37:42 has no hits.
BO06953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:50 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:41 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:52 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 133..846 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:51 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:04 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 133..846 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:04 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23602717..23602844 | 17..144 | 100 | -> | Plus |
2R | 23602900..23603302 | 145..547 | 100 | -> | Plus |
2R | 23603367..23603549 | 548..732 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:52 Download gff for
BO06953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19490240..19490367 | 17..144 | 100 | -> | Plus |
arm_2R | 19490423..19490825 | 145..547 | 100 | -> | Plus |
arm_2R | 19490890..19491072 | 548..732 | 98 | | Plus |
BO06953.pep Sequence
Translation from 16 to 748
> BO06953.pep
MIWDFFTFIRGATEFSATALLILLGCMGDSTNQGGESKFLVASVHYGLTV
MVVMHVFGFVSGAHSNPCISISCYLMGYIALEVMMMYVVCQMAGAFLGYF
LLMQLLPKELVDKSKPGICLVQPMDTLSTYQVVIIECLLTAVLVLGWCSL
WDVRNGRFLDSVAIRMGLLVIACSFAGIQLTGASMNPAKTLVPAIFYGSP
NSVLMQLTGQILAAIMVPFVWNHAYTPPYKPLEIPVCNASFLDH
BO06953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-PA | 238 | CG5398-PA | 1..238 | 1..238 | 1245 | 100 | Plus |
CG17664-PA | 265 | CG17664-PA | 27..249 | 14..234 | 383 | 35 | Plus |
CG17664-PC | 290 | CG17664-PC | 52..274 | 14..234 | 383 | 35 | Plus |
CG4019-PB | 249 | CG4019-PB | 15..196 | 14..196 | 347 | 37.7 | Plus |
CG4019-PD | 249 | CG4019-PD | 15..196 | 14..196 | 347 | 37.7 | Plus |