Clone BO06953 Report

Search the DGRC for BO06953

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG5398-RA
Protein status:BO06953.pep: full length peptide match
Sequenced Size:748

Clone Sequence Records

BO06953.5prime Sequence

746 bp (745 high quality bases) assembled on 2005-12-03

> BO06953.5prime
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACGCAAGCTTTCTAGACC

BO06953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-PA 717 CG5398-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 938 CG5398-RA 133..846 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23602898..23603302 143..547 2025 100 Plus
2R 25286936 2R 23603366..23603549 547..730 920 100 Plus
2R 25286936 2R 23602717..23602844 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:44:13 has no hits.

BO06953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:46 Download gff for BO06953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 17..733 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:26 Download gff for BO06953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:09 Download gff for BO06953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..737 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:14 Download gff for BO06953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..737 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:14 Download gff for BO06953.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23602707..23602844 7..144 97 -> Plus
2R 23602900..23603302 145..547 100 -> Plus
2R 23603367..23603555 548..737 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:09 Download gff for BO06953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19490230..19490367 7..144 97 -> Plus
arm_2R 19490423..19490825 145..547 100 -> Plus
arm_2R 19490890..19491078 548..737 98   Plus

BO06953.3prime Sequence

746 bp (745 high quality bases) assembled on 2005-12-03

> BO06953.3prime
ATGGTCTAGAAAGCTTGCGTTGCACACTGGAATTTCCAAGGGCTTATAAG
GTGGCGTATACGCATGATTCCACACGAAGGGCACCATGATGGCGGCCAGG
ATCTGGCCAGTCAGCTGCATTAGAACCGAATTCGGACTGCCGTAGAATAT
GGCAGGCACCAATGTCTTGGCGGGGTTCATACTGGCTCCAGTTAGTTGAA
TCCCTGCGAAACTGCAAGCGATCACGAGGAGACCCATGCGAATGGCGACC
GAGTCGAGGAACCTTCCGTTTCGCACGTCCCACAAGGAGCACCATCCGAG
CACGAGGACCGCGGTCAGCAGGCACTCGATGATGACGACCTGGTATGTGG
ACAGAGTGTCCATCGGTTGTACCAGGCAAATGCCTGGCTTGCTTTTGTCC
ACCAGCTCCTTGGGCAGCAGTTGCATTAGCAGGAAGTAACCAAGGAAAGC
ACCGGCCATCTGACACACCACGTACATCATCATCACTTCCAGGGCGATGT
AGCCCATCAAGTAGCATGAGATCGAGATGCATGGATTCGAATGGGCTCCG
GATACGAAGCCAAACACGTGCATCACCACCATCACCGTCAGGCCATAGTG
AACGCTGGCCACCAAGAATTTGCTCTCACCACCTTGGTTCGTTGAGTCTC
CCATGCAACCGAGCAAAATCAGTAGCGCAGTGGCACTGAACTCGGTGGCT
CCGCGTATAAAGGTAAAGAAGTCCCAGATCATGTCGACTGATAACT

BO06953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-PA 717 CG5398-RA 1..714 732..19 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 938 CG5398-RA 133..846 732..19 3570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23602898..23603302 606..202 2025 100 Minus
2R 25286936 2R 23603366..23603549 202..19 920 100 Minus
2R 25286936 2R 23602717..23602844 732..605 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:50:16 has no hits.

BO06953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:45 Download gff for BO06953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 16..732 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:24 Download gff for BO06953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 16..732 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:40 Download gff for BO06953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 12..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:34 Download gff for BO06953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 12..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:34 Download gff for BO06953.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23603367..23603555 12..201 98   Minus
2R 23602707..23602844 605..742 97 -> Minus
2R 23602900..23603302 202..604 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:40 Download gff for BO06953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19490230..19490367 605..742 97 -> Minus
arm_2R 19490423..19490825 202..604 100 -> Minus
arm_2R 19490890..19491078 12..201 98   Minus

BO06953.complete Sequence

748 bp (748 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630605

> BO06953.complete
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACGCAAGCTTTCTAGACCAT

BO06953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 717 CG5398-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 938 CG5398-RA 133..846 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23602898..23603302 143..547 2025 100 Plus
2R 25286936 2R 23603366..23603549 547..730 920 100 Plus
2R 25286936 2R 23602717..23602844 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:37:42 has no hits.

BO06953.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:50 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 1..717 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:41 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..737 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:52 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 133..846 17..732 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:51 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..737 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:04 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 133..846 17..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:04 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23602717..23602844 17..144 100 -> Plus
2R 23602900..23603302 145..547 100 -> Plus
2R 23603367..23603549 548..732 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:52 Download gff for BO06953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19490240..19490367 17..144 100 -> Plus
arm_2R 19490423..19490825 145..547 100 -> Plus
arm_2R 19490890..19491072 548..732 98   Plus

BO06953.pep Sequence

Translation from 16 to 748

> BO06953.pep
MIWDFFTFIRGATEFSATALLILLGCMGDSTNQGGESKFLVASVHYGLTV
MVVMHVFGFVSGAHSNPCISISCYLMGYIALEVMMMYVVCQMAGAFLGYF
LLMQLLPKELVDKSKPGICLVQPMDTLSTYQVVIIECLLTAVLVLGWCSL
WDVRNGRFLDSVAIRMGLLVIACSFAGIQLTGASMNPAKTLVPAIFYGSP
NSVLMQLTGQILAAIMVPFVWNHAYTPPYKPLEIPVCNASFLDH

BO06953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-PA 238 CG5398-PA 1..238 1..238 1245 100 Plus
CG17664-PA 265 CG17664-PA 27..249 14..234 383 35 Plus
CG17664-PC 290 CG17664-PC 52..274 14..234 383 35 Plus
CG4019-PB 249 CG4019-PB 15..196 14..196 347 37.7 Plus
CG4019-PD 249 CG4019-PD 15..196 14..196 347 37.7 Plus