Clone Sequence Records
BO06954.3prime Sequence
641 bp (640 high quality bases) assembled on 2005-12-03
> BO06954.3prime
ATGGTCTAGAAAGCTTGCCAAGTCTAATCCGCTCGGTCCCTGCCGATCCG
CTTTGACTTGGGCGCGACCACGTTTCAGTTGTAGACGTTCGCGGACCGCT
CGCTCCTGGCGCCTGCGCAGCTTCTCCAGTGTCTCCTCGCTGGGTGGCGC
AGGTGCCACAGCCTCCTGGGAGCGTATGATGGTGCGCAGCTTCTCCAGCG
CATCGGCCAGGTTCATTTGCTGGGAGCGCGTAAGATCACTCTTGATGTAA
AAGTAGCCGTCTTTGGTAATCCGGTTTGCCAGCACCTTGAGCAGCTTCTG
GCGCGTCTGCTCGGGTATCCAGTCCGCTTGTGCCACCTTGAAGCGTACAT
CCACCTTGGTATTCACCGTGTTCACGTGCTGACCACCGGGTCCGGAGCTC
CTGCTGTAGGTGATCTCCAGTCGGTCCATGGGAATGAAGCCGCTGAACTT
GTCGCTGCCACTGGGCGGCGGGGGCGGCGTGTAGATTTGCAGTCGGGCGC
CGGGATAGATCTTGTCCAGGGATAAATCGCTCTTGTAGGAGAGCTGACGA
CCCAGAAGGTTGCCTGTGCCGCCTGAGGAGCTGCTCTGGCGCAGAACTCT
TATGAAGGCACTCGTAATTTTATTCATGTCGACTGATAACT
BO06954.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-PA | 612 | CG6094-RA | 1..609 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 889 | CG6094-RB | 114..722 | 627..19 | 3045 | 100 | Minus |
CG6094-RA | 735 | CG6094-RA | 74..682 | 627..19 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10507418..10507865 | 466..19 | 2240 | 100 | Minus |
2L | 23513712 | 2L | 10507194..10507355 | 627..466 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:52:36 has no hits.
BO06954.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:46 Download gff for
BO06954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 18..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:27 Download gff for
BO06954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 18..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:25 Download gff for
BO06954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..688 | 10..635 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:25 Download gff for
BO06954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..688 | 10..635 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:25 Download gff for
BO06954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10507188..10507355 | 466..635 | 97 | -> | Minus |
2L | 10507419..10507871 | 10..465 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:25 Download gff for
BO06954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10507188..10507355 | 466..635 | 97 | -> | Minus |
arm_2L | 10507419..10507871 | 10..465 | 99 | | Minus |
BO06954.5prime Sequence
641 bp (640 high quality bases) assembled on 2005-12-03
> BO06954.5prime
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTCTAGACC
BO06954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-PA | 612 | CG6094-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 889 | CG6094-RB | 114..722 | 17..625 | 3045 | 100 | Plus |
CG6094-RA | 735 | CG6094-RA | 74..682 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10507418..10507865 | 178..625 | 2240 | 100 | Plus |
2L | 23513712 | 2L | 10507194..10507355 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:29:50 has no hits.
BO06954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:47 Download gff for
BO06954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:29 Download gff for
BO06954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:06 Download gff for
BO06954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..688 | 9..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:38:51 Download gff for
BO06954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..688 | 9..634 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:38:51 Download gff for
BO06954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10507188..10507355 | 9..178 | 97 | -> | Plus |
2L | 10507419..10507871 | 179..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:06 Download gff for
BO06954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10507188..10507355 | 9..178 | 97 | -> | Plus |
arm_2L | 10507419..10507871 | 179..634 | 99 | | Plus |
BO06954.complete Sequence
643 bp assembled on 2007-10-17
GenBank Submission: FJ630606
> BO06954.complete
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTCTAGACCAT
BO06954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 612 | CG6094-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
CG6094-RA | 612 | CG6094-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 889 | CG6094-RB | 114..722 | 17..625 | 3045 | 100 | Plus |
CG6094-RA | 735 | CG6094-RA | 74..682 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10507418..10507865 | 178..625 | 2240 | 100 | Plus |
2L | 23513712 | 2L | 10507194..10507355 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:34:30 has no hits.
BO06954.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:11 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 1..612 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:23 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 72..692 | 9..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:01 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 74..682 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:29 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 78..686 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:38 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 74..682 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:38 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10507194..10507355 | 17..178 | 100 | -> | Plus |
2L | 10507419..10507865 | 179..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:01 Download gff for
BO06954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10507194..10507355 | 17..178 | 100 | -> | Plus |
arm_2L | 10507419..10507865 | 179..627 | 99 | | Plus |
BO06954.pep Sequence
Translation from 16 to 643
> BO06954.pep
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDLASFLDH
BO06954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-PB | 203 | CG6094-PB | 1..203 | 1..203 | 1024 | 100 | Plus |
CG6094-PA | 203 | CG6094-PA | 1..203 | 1..203 | 1024 | 100 | Plus |