Clone BO06954 Report

Search the DGRC for BO06954

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG6094-RA
Protein status:BO06954.pep: validated full length
Sequenced Size:643

Clone Sequence Records

BO06954.3prime Sequence

641 bp (640 high quality bases) assembled on 2005-12-03

> BO06954.3prime
ATGGTCTAGAAAGCTTGCCAAGTCTAATCCGCTCGGTCCCTGCCGATCCG
CTTTGACTTGGGCGCGACCACGTTTCAGTTGTAGACGTTCGCGGACCGCT
CGCTCCTGGCGCCTGCGCAGCTTCTCCAGTGTCTCCTCGCTGGGTGGCGC
AGGTGCCACAGCCTCCTGGGAGCGTATGATGGTGCGCAGCTTCTCCAGCG
CATCGGCCAGGTTCATTTGCTGGGAGCGCGTAAGATCACTCTTGATGTAA
AAGTAGCCGTCTTTGGTAATCCGGTTTGCCAGCACCTTGAGCAGCTTCTG
GCGCGTCTGCTCGGGTATCCAGTCCGCTTGTGCCACCTTGAAGCGTACAT
CCACCTTGGTATTCACCGTGTTCACGTGCTGACCACCGGGTCCGGAGCTC
CTGCTGTAGGTGATCTCCAGTCGGTCCATGGGAATGAAGCCGCTGAACTT
GTCGCTGCCACTGGGCGGCGGGGGCGGCGTGTAGATTTGCAGTCGGGCGC
CGGGATAGATCTTGTCCAGGGATAAATCGCTCTTGTAGGAGAGCTGACGA
CCCAGAAGGTTGCCTGTGCCGCCTGAGGAGCTGCTCTGGCGCAGAACTCT
TATGAAGGCACTCGTAATTTTATTCATGTCGACTGATAACT

BO06954.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PA 612 CG6094-RA 1..609 627..19 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..722 627..19 3045 100 Minus
CG6094-RA 735 CG6094-RA 74..682 627..19 3045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507865 466..19 2240 100 Minus
2L 23513712 2L 10507194..10507355 627..466 810 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:52:36 has no hits.

BO06954.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:46 Download gff for BO06954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 18..627 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:27 Download gff for BO06954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 18..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:25 Download gff for BO06954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 10..635 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:25 Download gff for BO06954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 10..635 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:25 Download gff for BO06954.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10507188..10507355 466..635 97 -> Minus
2L 10507419..10507871 10..465 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:25 Download gff for BO06954.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507188..10507355 466..635 97 -> Minus
arm_2L 10507419..10507871 10..465 99   Minus

BO06954.5prime Sequence

641 bp (640 high quality bases) assembled on 2005-12-03

> BO06954.5prime
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTCTAGACC

BO06954.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PA 612 CG6094-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..722 17..625 3045 100 Plus
CG6094-RA 735 CG6094-RA 74..682 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507865 178..625 2240 100 Plus
2L 23513712 2L 10507194..10507355 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:29:50 has no hits.

BO06954.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:47 Download gff for BO06954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..626 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:29 Download gff for BO06954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:06 Download gff for BO06954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 9..634 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:38:51 Download gff for BO06954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 9..634 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:38:51 Download gff for BO06954.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10507188..10507355 9..178 97 -> Plus
2L 10507419..10507871 179..634 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:06 Download gff for BO06954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507188..10507355 9..178 97 -> Plus
arm_2L 10507419..10507871 179..634 99   Plus

BO06954.complete Sequence

643 bp assembled on 2007-10-17

GenBank Submission: FJ630606

> BO06954.complete
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTCTAGACCAT

BO06954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 612 CG6094-PB 1..609 17..625 3045 100 Plus
CG6094-RA 612 CG6094-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..722 17..625 3045 100 Plus
CG6094-RA 735 CG6094-RA 74..682 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507865 178..625 2240 100 Plus
2L 23513712 2L 10507194..10507355 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:34:30 has no hits.

BO06954.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:11 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 17..626 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:23 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 72..692 9..634 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:01 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 74..682 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:29 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 78..686 17..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:38 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 74..682 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:38 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507194..10507355 17..178 100 -> Plus
2L 10507419..10507865 179..627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:01 Download gff for BO06954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507194..10507355 17..178 100 -> Plus
arm_2L 10507419..10507865 179..627 99   Plus

BO06954.pep Sequence

Translation from 16 to 643

> BO06954.pep
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDLASFLDH

BO06954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PB 203 CG6094-PB 1..203 1..203 1024 100 Plus
CG6094-PA 203 CG6094-PA 1..203 1..203 1024 100 Plus