Clone BO06955 Report

Search the DGRC for BO06955

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptPglym87-RA
Protein status:BO06955.pep: full length peptide match
Sequenced Size:910

Clone Sequence Records

BO06955.3prime Sequence

859 bp (858 high quality bases) assembled on 2005-12-03

> BO06955.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTTTGCCCTGGTTGGCCACCGACTCCA
TTGCCTTCTTCACCGTCTCCGGATCGCCGAGGAACTTCAACGTGGCCAAA
GGCTTGAGGCTCTCGTCTAGTTCGTAGACGAAAGGAATGCCAGTGGGCAG
GTTGAGGCTCATAATGTCCTTGTCAGAGATGCATTCCAAGTGCTTGACCA
CGCCCCGCAGGCTGTTGCCGTGGGCGGCGATCAGGACACGCATTCCATCC
TTGATCTGGGGCACTATGACCTCGTTCCAGTAGGGCAAGGTGCGCTCGAT
GGTGAGCTTGAGGGACTCGGATTTGGGGAACTCCTCCGGCTTCAGTTGGT
CCTTGTAGCGCGGATCCTCAACAATGCAGGCGTAGTACTCGTGATCCTTC
TCCATTGGCGGCGGTGGGGTGTCAAAGCTGCGGCGCCAGATCTTAACCTT
CTCCTCGCCGAACTTCTTGGCGGTCTCGGCCTTATTCAGTCCCGTCAGTC
CGCCGTAGTGGCGCTCGTTGAGGCGCCACGTGGTGCACACCGGAATCTTC
TTGTGCTCGCTGGACTTTAGGGCGGCCCTGAGTGTCTCCTGGGCTCTGGT
CAGCACCGAGGTGTGGGCCACATCGAACTCAATTTTGGCATCTTTGAGCG
CTTTGCCAGCGGCACAGGCCTCCTGCTGCCCCTTCTCCGATAGCTTGGCA
TCGAACCATCCGCAGAATAGGTTCTTCTGATTCCATTCGGACTCTCCATG
ACGAACCATCACAATCCTGTACTTGCCCTTCTTCTCGGCCTGCTTTCCGC
CGGATGATGACTTCGAGAACGGGCAGCGGGCTTCGATGTTCGCCACGCGA
CACAGCAAT

BO06955.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17645-PA 879 Pglym87-RA 36..876 859..19 4205 100 Minus
CG1721-PA 768 Pglym78-RA 154..186 630..598 165 100 Minus
CG1721-PB 768 Pglym78-RB 154..186 630..598 165 100 Minus
CG1721-PC 768 Pglym78-RC 154..186 630..598 165 100 Minus
CG1721-PA 768 Pglym78-RA 442..518 342..266 160 88.3 Minus
CG1721-PB 768 Pglym78-RB 442..518 342..266 160 88.3 Minus
CG1721-PC 768 Pglym78-RC 442..518 342..266 160 88.3 Minus
CG1721-PA 768 Pglym78-RA 256..315 528..469 150 90 Minus
CG1721-PB 768 Pglym78-RB 256..315 528..469 150 90 Minus
CG1721-PC 768 Pglym78-RC 256..315 528..469 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 1085 CG17645-RA 88..928 859..19 4205 100 Minus
Pglym78-RC 1042 CG1721-RC 115..873 777..19 1235 77.8 Minus
Pglym78-RB 1022 CG1721-RB 95..853 777..19 1235 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12231802..12232642 19..859 4205 100 Plus
3R 32079331 3R 29149011..29149498 678..191 790 77.5 Minus
3R 32079331 3R 29149594..29149732 157..19 290 80.6 Minus
Blast to na_te.dros performed on 2015-02-11 23:44:25 has no hits.

BO06955.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:49 Download gff for BO06955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 36..879 16..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:30 Download gff for BO06955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 36..879 16..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:11 Download gff for BO06955.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 88..928 19..859 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:39 Download gff for BO06955.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 88..928 19..859 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:39 Download gff for BO06955.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12231802..12232642 19..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:11 Download gff for BO06955.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8057524..8058364 19..859 100   Plus

BO06955.5prime Sequence

907 bp (795 high quality bases) assembled on 2005-12-03

> BO06955.5prime
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGGCCACCANGGCAAAGCAAAGCAAGCTTT
CTAGACC

BO06955.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17645-PA 879 Pglym87-RA 1..872 17..888 4291 99.6 Plus
CG1721-PA 768 Pglym78-RA 154..186 281..313 165 100 Plus
CG1721-PB 768 Pglym78-RB 154..186 281..313 165 100 Plus
CG1721-PC 768 Pglym78-RC 154..186 281..313 165 100 Plus
CG1721-PA 768 Pglym78-RA 442..518 569..645 160 88.3 Plus
CG1721-PB 768 Pglym78-RB 442..518 569..645 160 88.3 Plus
CG1721-PC 768 Pglym78-RC 442..518 569..645 160 88.3 Plus
CG1721-PA 768 Pglym78-RA 256..315 383..442 150 90 Plus
CG1721-PB 768 Pglym78-RB 256..315 383..442 150 90 Plus
CG1721-PC 768 Pglym78-RC 256..315 383..442 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 1085 CG17645-RA 53..928 17..892 4324 99.5 Plus
Pglym78-RC 1042 CG1721-RC 115..878 134..897 1204 77.4 Plus
Pglym78-RB 1022 CG1721-RB 95..858 134..897 1204 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12231802..12232677 892..17 4324 99.5 Minus
3R 32079331 3R 29149011..29149498 233..720 790 77.5 Plus
3R 32079331 3R 29149594..29149737 754..897 259 78.5 Plus
Blast to na_te.dros performed on 2015-02-04 20:15:12 has no hits.

BO06955.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:50 Download gff for BO06955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:31 Download gff for BO06955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:38 Download gff for BO06955.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 53..928 17..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:08 Download gff for BO06955.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 53..928 17..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:08 Download gff for BO06955.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12231802..12232677 17..892 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:38 Download gff for BO06955.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8057524..8058399 17..892 99   Minus

BO06955.complete Sequence

910 bp (910 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630607

> BO06955.complete
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGGCAAGCTT
TCTAGACCAT

BO06955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 879 CG17645-PA 1..876 17..892 4380 100 Plus
Pglym78-RC 768 CG1721-PC 7..765 134..892 1215 77.3 Plus
Pglym78-RB 768 CG1721-PB 7..765 134..892 1215 77.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 1085 CG17645-RA 53..928 17..892 4380 100 Plus
Pglym78-RC 1042 CG1721-RC 115..873 134..892 1215 77.3 Plus
Pglym78-RB 1022 CG1721-RB 95..853 134..892 1215 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12231802..12232677 892..17 4380 100 Minus
3R 32079331 3R 29149011..29149498 233..720 790 77.5 Plus
3R 32079331 3R 29149594..29149732 754..892 290 80.6 Plus
Blast to na_te.dros performed on 2014-11-27 07:27:45 has no hits.

BO06955.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:52 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:43 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 77..952 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:43 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 58..928 22..894 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:52 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 77..952 17..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:09 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 58..928 22..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:09 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12231799..12232672 22..894 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:43 Download gff for BO06955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8057521..8058394 22..894 99   Minus

BO06955.pep Sequence

Translation from 16 to 910

> BO06955.pep
MLALARNSWCGQLLCRVANIEARCPFSKSSSGGKQAEKKGKYRIVMVRHG
ESEWNQKNLFCGWFDAKLSEKGQQEACAAGKALKDAKIEFDVAHTSVLTR
AQETLRAALKSSEHKKIPVCTTWRLNERHYGGLTGLNKAETAKKFGEEKV
KIWRRSFDTPPPPMEKDHEYYACIVEDPRYKDQLKPEEFPKSESLKLTIE
RTLPYWNEVIVPQIKDGMRVLIAAHGNSLRGVVKHLECISDKDIMSLNLP
TGIPFVYELDESLKPLATLKFLGDPETVKKAMESVANQGKAKASFLDH

BO06955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-PA 292 CG17645-PA 1..292 1..292 1544 100 Plus
Pglym78-PC 255 CG1721-PC 3..255 40..292 1042 75.9 Plus
Pglym78-PB 255 CG1721-PB 3..255 40..292 1042 75.9 Plus
Pglym78-PA 255 CG1721-PA 3..255 40..292 1042 75.9 Plus
CG7059-PC 253 CG7059-PC 6..252 43..289 486 41 Plus