Clone Sequence Records
BO06955.3prime Sequence
859 bp (858 high quality bases) assembled on 2005-12-03
> BO06955.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTTTGCCCTGGTTGGCCACCGACTCCA
TTGCCTTCTTCACCGTCTCCGGATCGCCGAGGAACTTCAACGTGGCCAAA
GGCTTGAGGCTCTCGTCTAGTTCGTAGACGAAAGGAATGCCAGTGGGCAG
GTTGAGGCTCATAATGTCCTTGTCAGAGATGCATTCCAAGTGCTTGACCA
CGCCCCGCAGGCTGTTGCCGTGGGCGGCGATCAGGACACGCATTCCATCC
TTGATCTGGGGCACTATGACCTCGTTCCAGTAGGGCAAGGTGCGCTCGAT
GGTGAGCTTGAGGGACTCGGATTTGGGGAACTCCTCCGGCTTCAGTTGGT
CCTTGTAGCGCGGATCCTCAACAATGCAGGCGTAGTACTCGTGATCCTTC
TCCATTGGCGGCGGTGGGGTGTCAAAGCTGCGGCGCCAGATCTTAACCTT
CTCCTCGCCGAACTTCTTGGCGGTCTCGGCCTTATTCAGTCCCGTCAGTC
CGCCGTAGTGGCGCTCGTTGAGGCGCCACGTGGTGCACACCGGAATCTTC
TTGTGCTCGCTGGACTTTAGGGCGGCCCTGAGTGTCTCCTGGGCTCTGGT
CAGCACCGAGGTGTGGGCCACATCGAACTCAATTTTGGCATCTTTGAGCG
CTTTGCCAGCGGCACAGGCCTCCTGCTGCCCCTTCTCCGATAGCTTGGCA
TCGAACCATCCGCAGAATAGGTTCTTCTGATTCCATTCGGACTCTCCATG
ACGAACCATCACAATCCTGTACTTGCCCTTCTTCTCGGCCTGCTTTCCGC
CGGATGATGACTTCGAGAACGGGCAGCGGGCTTCGATGTTCGCCACGCGA
CACAGCAAT
BO06955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17645-PA | 879 | Pglym87-RA | 36..876 | 859..19 | 4205 | 100 | Minus |
CG1721-PA | 768 | Pglym78-RA | 154..186 | 630..598 | 165 | 100 | Minus |
CG1721-PB | 768 | Pglym78-RB | 154..186 | 630..598 | 165 | 100 | Minus |
CG1721-PC | 768 | Pglym78-RC | 154..186 | 630..598 | 165 | 100 | Minus |
CG1721-PA | 768 | Pglym78-RA | 442..518 | 342..266 | 160 | 88.3 | Minus |
CG1721-PB | 768 | Pglym78-RB | 442..518 | 342..266 | 160 | 88.3 | Minus |
CG1721-PC | 768 | Pglym78-RC | 442..518 | 342..266 | 160 | 88.3 | Minus |
CG1721-PA | 768 | Pglym78-RA | 256..315 | 528..469 | 150 | 90 | Minus |
CG1721-PB | 768 | Pglym78-RB | 256..315 | 528..469 | 150 | 90 | Minus |
CG1721-PC | 768 | Pglym78-RC | 256..315 | 528..469 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 1085 | CG17645-RA | 88..928 | 859..19 | 4205 | 100 | Minus |
Pglym78-RC | 1042 | CG1721-RC | 115..873 | 777..19 | 1235 | 77.8 | Minus |
Pglym78-RB | 1022 | CG1721-RB | 95..853 | 777..19 | 1235 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12231802..12232642 | 19..859 | 4205 | 100 | Plus |
3R | 32079331 | 3R | 29149011..29149498 | 678..191 | 790 | 77.5 | Minus |
3R | 32079331 | 3R | 29149594..29149732 | 157..19 | 290 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:44:25 has no hits.
BO06955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:49 Download gff for
BO06955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 36..879 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:30 Download gff for
BO06955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 36..879 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:11 Download gff for
BO06955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 88..928 | 19..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:39 Download gff for
BO06955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 88..928 | 19..859 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:39 Download gff for
BO06955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12231802..12232642 | 19..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:11 Download gff for
BO06955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8057524..8058364 | 19..859 | 100 | | Plus |
BO06955.5prime Sequence
907 bp (795 high quality bases) assembled on 2005-12-03
> BO06955.5prime
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGGCCACCANGGCAAAGCAAAGCAAGCTTT
CTAGACC
BO06955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17645-PA | 879 | Pglym87-RA | 1..872 | 17..888 | 4291 | 99.6 | Plus |
CG1721-PA | 768 | Pglym78-RA | 154..186 | 281..313 | 165 | 100 | Plus |
CG1721-PB | 768 | Pglym78-RB | 154..186 | 281..313 | 165 | 100 | Plus |
CG1721-PC | 768 | Pglym78-RC | 154..186 | 281..313 | 165 | 100 | Plus |
CG1721-PA | 768 | Pglym78-RA | 442..518 | 569..645 | 160 | 88.3 | Plus |
CG1721-PB | 768 | Pglym78-RB | 442..518 | 569..645 | 160 | 88.3 | Plus |
CG1721-PC | 768 | Pglym78-RC | 442..518 | 569..645 | 160 | 88.3 | Plus |
CG1721-PA | 768 | Pglym78-RA | 256..315 | 383..442 | 150 | 90 | Plus |
CG1721-PB | 768 | Pglym78-RB | 256..315 | 383..442 | 150 | 90 | Plus |
CG1721-PC | 768 | Pglym78-RC | 256..315 | 383..442 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 1085 | CG17645-RA | 53..928 | 17..892 | 4324 | 99.5 | Plus |
Pglym78-RC | 1042 | CG1721-RC | 115..878 | 134..897 | 1204 | 77.4 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 95..858 | 134..897 | 1204 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12231802..12232677 | 892..17 | 4324 | 99.5 | Minus |
3R | 32079331 | 3R | 29149011..29149498 | 233..720 | 790 | 77.5 | Plus |
3R | 32079331 | 3R | 29149594..29149737 | 754..897 | 259 | 78.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:15:12 has no hits.
BO06955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:50 Download gff for
BO06955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:31 Download gff for
BO06955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:38 Download gff for
BO06955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 53..928 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:08 Download gff for
BO06955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 53..928 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:08 Download gff for
BO06955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12231802..12232677 | 17..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:38 Download gff for
BO06955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8057524..8058399 | 17..892 | 99 | | Minus |
BO06955.complete Sequence
910 bp (910 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630607
> BO06955.complete
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGGCAAGCTT
TCTAGACCAT
BO06955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 879 | CG17645-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Pglym78-RC | 768 | CG1721-PC | 7..765 | 134..892 | 1215 | 77.3 | Plus |
Pglym78-RB | 768 | CG1721-PB | 7..765 | 134..892 | 1215 | 77.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 1085 | CG17645-RA | 53..928 | 17..892 | 4380 | 100 | Plus |
Pglym78-RC | 1042 | CG1721-RC | 115..873 | 134..892 | 1215 | 77.3 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 95..853 | 134..892 | 1215 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12231802..12232677 | 892..17 | 4380 | 100 | Minus |
3R | 32079331 | 3R | 29149011..29149498 | 233..720 | 790 | 77.5 | Plus |
3R | 32079331 | 3R | 29149594..29149732 | 754..892 | 290 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:27:45 has no hits.
BO06955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:52 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:43 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 77..952 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:43 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 58..928 | 22..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:52 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 77..952 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:09 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 58..928 | 22..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:09 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12231799..12232672 | 22..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:43 Download gff for
BO06955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8057521..8058394 | 22..894 | 99 | | Minus |
BO06955.pep Sequence
Translation from 16 to 910
> BO06955.pep
MLALARNSWCGQLLCRVANIEARCPFSKSSSGGKQAEKKGKYRIVMVRHG
ESEWNQKNLFCGWFDAKLSEKGQQEACAAGKALKDAKIEFDVAHTSVLTR
AQETLRAALKSSEHKKIPVCTTWRLNERHYGGLTGLNKAETAKKFGEEKV
KIWRRSFDTPPPPMEKDHEYYACIVEDPRYKDQLKPEEFPKSESLKLTIE
RTLPYWNEVIVPQIKDGMRVLIAAHGNSLRGVVKHLECISDKDIMSLNLP
TGIPFVYELDESLKPLATLKFLGDPETVKKAMESVANQGKAKASFLDH
BO06955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-PA | 292 | CG17645-PA | 1..292 | 1..292 | 1544 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 3..255 | 40..292 | 1042 | 75.9 | Plus |
Pglym78-PB | 255 | CG1721-PB | 3..255 | 40..292 | 1042 | 75.9 | Plus |
Pglym78-PA | 255 | CG1721-PA | 3..255 | 40..292 | 1042 | 75.9 | Plus |
CG7059-PC | 253 | CG7059-PC | 6..252 | 43..289 | 486 | 41 | Plus |