Clone Sequence Records
BO06956.3prime Sequence
572 bp (571 high quality bases) assembled on 2005-12-03
> BO06956.3prime
ATGGTCTAGAAAGCTTGCAAAGAGCGTGTCCTCGGCGCGAATATATTCGC
CGATATCCGACTGATGAAAGCATACGGTGGTCATGGGATCGGCGGTCTTG
CAGTCCGTTGTGGAACGCGCCAGGACGCCGAAGCCCAGAGGCAGGTCGTT
CATGGAGTAAACCACCACGCCCTGGTACTGGCCGGCGTTCTCCGTGATGC
GACCCAGTCCGGTTTTGGGTATGTGGTTGCCGTAGAGAAACTGCTGCTCG
AAGGAGGGCTTCACCCACACCTTGTACTGGGCGTAGGGCGCCAAGTAGTA
GAGCGCCGTGATATGGAACTTCAGTTTGTTGGTCTTGGAGAACTTGCCGA
AGCAGGTGCCCACGCACACCAGCTGCTTGTAGCCGAAGCACTCGCTCAGC
TTCAAAATCCGCTCCGAGACGTAGTAGACCCGATCCTTGTGCTCCCGAAA
GCAATATGTTCCATCTGGCCGGTCAATCAAATGCTTCACATTTGTGCCAA
TGTATTTGGACAGGTGCTCGAACAAGATCTTGGCACGTTCGTCGCTCAGG
CGTTTCATGTCGACTGATAACT
BO06956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 543 | CG7006-RA | 1..540 | 558..19 | 2600 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..628 | 558..19 | 2640 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851305 | 502..19 | 2360 | 99.2 | Minus |
| 3R | 32079331 | 3R | 24850715..24850770 | 558..503 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:52:55 has no hits.
BO06956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:50 Download gff for
BO06956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 18..558 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:33 Download gff for
BO06956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 18..558 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:28 Download gff for
BO06956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 19..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:32 Download gff for
BO06956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 19..558 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:32 Download gff for
BO06956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850715..24850770 | 503..558 | 100 | -> | Minus |
| 3R | 24850822..24851305 | 19..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:28 Download gff for
BO06956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676437..20676492 | 503..558 | 100 | -> | Minus |
| arm_3R | 20676544..20677027 | 19..502 | 99 | | Minus |
BO06956.5prime Sequence
575 bp (417 high quality bases) assembled on 2005-11-07
> BO06956.5prime
CATTCGACATGAAACGCCTGAGCAGACAAACGTGCCAAGATCTTGTTCGA
GCACCTGTCCAAATACATTGGCACAAATGTGAAGCATTTGATTGACCGGC
CAGATGGAACATATTGCTTTCGGGAGCACAAAGATCGGGTCTACTACGTC
TCGGAGCGGATTTTGAAGCTGAACGAGTGCTTCGGCTACAAGCAGCTGGA
GTGCGTGGGCACCTGCTTCGGAAAGTTCTCCAAGACCAACAAACTGAAGT
TCCATATCACGGCGCTCTACTACTTGGCGCCCTACGCCCAGTACAAGGTG
TGGGTGAAGCCCTCCTTCGAGCACCAGTTTCTCTACGGCAACCACATACC
CAAAACCGGACTGGGTCGCATCACGGAGAACGCCGGCCAGTACCATGGCG
TGGTGGTTTACTCCATGAACGACCTGCCTCTGGGATTCTGCGTCCTGTGG
CGTTCCACAACTGACTGCAGGACCACCTATCCCATGACCACCGTAAGCTT
TCATCAATCTGATATCGGCAAACATATTCGCGCCAAGGACACGCTCTTTG
CAAGCTTTCTACATCATTCGAATGT
BO06956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 543 | CG7006-RA | 20..540 | 29..549 | 2005 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..628 | 9..549 | 2305 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851305 | 66..549 | 2060 | 95 | Plus |
| 3R | 32079331 | 3R | 24850715..24850770 | 9..65 | 220 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:50:41 has no hits.
BO06956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:52 Download gff for
BO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 9..550 | 94 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:35 Download gff for
BO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 9..550 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:44 Download gff for
BO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 83..628 | 1..549 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:25 Download gff for
BO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 83..628 | 1..549 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:25 Download gff for
BO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850822..24851305 | 66..549 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:44 Download gff for
BO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676544..20677027 | 66..549 | 95 | | Plus |
BO06956.complete Sequence
574 bp (574 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630608
> BO06956.complete
GAAGTTATCAGTCGACATGAAACGCCTGAGCGACGAACGTGCCAAGATCT
TGTTCGAGCACCTGTCCAAATACATTGGCACAAATGTGAAGCATTTGATT
GACCGGCCAGATGGAACATATTGCTTTCGGGAGCACAAGGATCGGGTCTA
CTACGTCTCGGAGCGGATTTTGAAGCTGAGCGAGTGCTTCGGCTACAAGC
AGCTGGTGTGCGTGGGCACCTGCTTCGGCAAGTTCTCCAAGACCAACAAA
CTGAAGTTCCATATCACGGCGCTCTACTACTTGGCGCCCTACGCCCAGTA
CAAGGTGTGGGTGAAGCCCTCCTTCGAGCAGCAGTTTCTCTACGGCAACC
ACATACCCAAAACCGGACTGGGTCGCATCACGGAGAACGCCGGCCAGTAC
CAGGGCGTGGTGGTTTACTCCATGAACGACCTGCCTCTGGGCTTCGGCGT
CCTGGCGCGTTCCACAACGGACTGCAAGACCGCCGATCCCATGACCACCG
TATGCTTTCATCAGTCGGATATCGGCGAATATATTCGCGCCGAGGACACG
CTCTTTGCAAGCTTTCTAGACCAT
BO06956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 543 | CG7006-PA | 1..540 | 17..556 | 2640 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..628 | 17..556 | 2640 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851305 | 73..556 | 2360 | 99.2 | Plus |
| 3R | 32079331 | 3R | 24850715..24850770 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:30:24 has no hits.
BO06956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:53 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 1..543 | 17..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:44 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 84..623 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:10 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 17..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:53 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 84..623 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:35 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 17..558 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:35 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850715..24850770 | 17..72 | 100 | -> | Plus |
| 3R | 24850822..24851305 | 73..558 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:10 Download gff for
BO06956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676437..20676492 | 17..72 | 100 | -> | Plus |
| arm_3R | 20676544..20677027 | 73..558 | 98 | | Plus |
BO06956.pep Sequence
Translation from 16 to 574
> BO06956.pep
MKRLSDERAKILFEHLSKYIGTNVKHLIDRPDGTYCFREHKDRVYYVSER
ILKLSECFGYKQLVCVGTCFGKFSKTNKLKFHITALYYLAPYAQYKVWVK
PSFEQQFLYGNHIPKTGLGRITENAGQYQGVVVYSMNDLPLGFGVLARST
TDCKTADPMTTVCFHQSDIGEYIRAEDTLFASFLDH
BO06956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 180 | CG7006-PA | 1..180 | 1..180 | 970 | 100 | Plus |
