Clone Sequence Records
BO06957.3prime Sequence
716 bp (715 high quality bases) assembled on 2005-12-03
> BO06957.3prime
ATGGTCTAGAAAGCTTGCACGGTTGGACTTGGCGACACGCTCCAACTCAT
CCTTCTTCTTGATGGCGTACGAGTTGGAAGATCCCTTAGCAGCGTTGATC
AGCTCATCAGCCAGGCACTCGGCGATGGTCTTGATGTTCCTGAAGGCAGC
CTCACGAGCTCCAGTGCACAGCAGCCAGATAGCCTGGTTGACGCGACGCA
GGGGCGACACATCGACGGCCTGGCGACGGACGGTACCGGCACGTCCAATA
CGGGTGGAGTCCTCACGGGGTCCCGAGTTGATGATGGCGCTGACCAGGAT
CTGCAGAGGGTTCTCCCCGGTGAGCAGATGAATGATCTCGAACGAGTGCT
TGACGATGCGGCAGGCCATCAGCTTCTTGCCGTTGTTGCGACCCTTCATC
ATCAGGGAGCAGGTCAAACGCTCCACAATGGGGCACTGGGCCTTGCGGAA
ACGCTTGGCGGCATAACGTCCGGCGGAATGGGGAAGATAGCGGGCAAACT
TCTCCTTCACCGAGATGTAATCCTGCAGAGAGATGTCGTTAACGGTGACA
TCGTCGCAAGACCAGCGGCCGAACAGCTTGATCTCCGGCAGCTCAGTGGT
GGACACCACATTTGTCTCCAGGATCGTCTCGGCCACCTCGGCTTCCATAG
GTGCCGCTGGCTCCTCGAAGGTCTCCACCACGTTTTCAGCAACTTCGGCC
ATGTCGACTGATAACT
BO06957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8922-PA | 687 | RpS5a-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
CG7014-PA | 693 | RpS5b-RA | 586..683 | 123..26 | 290 | 91.8 | Minus |
CG7014-PA | 693 | RpS5b-RA | 202..290 | 507..419 | 170 | 87.6 | Minus |
CG7014-PA | 693 | RpS5b-RA | 343..386 | 366..323 | 145 | 93.1 | Minus |
CG7014-PA | 693 | RpS5b-RA | 484..527 | 225..182 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RA | 864 | CG8922-RA | 61..746 | 704..19 | 3430 | 100 | Minus |
RpS5a-RD | 809 | CG8922-RD | 7..691 | 703..19 | 3425 | 100 | Minus |
RpS5a-RC | 1380 | CG8922-RC | 578..1262 | 703..19 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17146798..17147200 | 301..703 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 14900952..14901358 | 183..589 | 970 | 82.6 | Plus |
X | 23542271 | X | 17145015..17145137 | 183..305 | 615 | 100 | Plus |
3R | 32079331 | 3R | 14900530..14900697 | 19..186 | 525 | 87.5 | Plus |
X | 23542271 | X | 17144617..17144718 | 84..185 | 510 | 100 | Plus |
X | 23542271 | X | 17143706..17143773 | 19..86 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:14:24 has no hits.
BO06957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:52 Download gff for
BO06957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-PA | 1..687 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:36 Download gff for
BO06957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8922-PA | 1..687 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:54 Download gff for
BO06957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..750 | 14..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:21:05 Download gff for
BO06957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..750 | 14..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:21:05 Download gff for
BO06957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17143702..17143771 | 14..84 | 97 | <- | Plus |
X | 17144618..17144716 | 85..183 | 100 | <- | Plus |
X | 17145016..17145132 | 184..300 | 100 | <- | Plus |
X | 17146798..17147200 | 301..703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:54 Download gff for
BO06957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17037735..17037804 | 14..84 | 97 | <- | Plus |
arm_X | 17038651..17038749 | 85..183 | 100 | <- | Plus |
arm_X | 17039049..17039165 | 184..300 | 100 | <- | Plus |
arm_X | 17040831..17041233 | 301..703 | 100 | | Plus |
BO06957.5prime Sequence
716 bp (715 high quality bases) assembled on 2005-12-03
> BO06957.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCT
TCGAGGAGCCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTG
GAGACAAATGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGG
CCGCTGGTCTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATT
ACATCTCGGTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGA
CGTTATGCCGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCG
TTTGACCTGCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGA
TGGCCTGCCGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACC
GGGGAGAACCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACC
CCGTGAGGACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGG
CCGTCGATGTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTG
TGCACTGGAGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGA
GTGCCTGGCTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGT
ACGCCATCAAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGT
GCAAGCTTTCTAGACC
BO06957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8922-PA | 687 | RpS5a-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG7014-PA | 693 | RpS5b-RA | 586..683 | 596..693 | 290 | 91.8 | Plus |
CG7014-PA | 693 | RpS5b-RA | 202..290 | 212..300 | 170 | 87.6 | Plus |
CG7014-PA | 693 | RpS5b-RA | 343..386 | 353..396 | 145 | 93.1 | Plus |
CG7014-PA | 693 | RpS5b-RA | 484..527 | 494..537 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RA | 864 | CG8922-RA | 61..746 | 15..700 | 3430 | 100 | Plus |
RpS5a-RD | 809 | CG8922-RD | 7..691 | 16..700 | 3425 | 100 | Plus |
RpS5a-RC | 1380 | CG8922-RC | 578..1262 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17146798..17147200 | 418..16 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 14900952..14901358 | 536..130 | 970 | 82.6 | Minus |
X | 23542271 | X | 17145015..17145137 | 536..414 | 615 | 100 | Minus |
3R | 32079331 | 3R | 14900530..14900697 | 700..533 | 525 | 87.5 | Minus |
X | 23542271 | X | 17144617..17144718 | 635..534 | 510 | 100 | Minus |
X | 23542271 | X | 17143706..17143773 | 700..633 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:12:07 has no hits.
BO06957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:54 Download gff for
BO06957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-PA | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:38 Download gff for
BO06957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8922-PA | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:28 Download gff for
BO06957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..750 | 15..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:47 Download gff for
BO06957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..750 | 15..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:47 Download gff for
BO06957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17143702..17143771 | 635..705 | 97 | <- | Minus |
X | 17144618..17144716 | 536..634 | 100 | <- | Minus |
X | 17145016..17145132 | 419..535 | 100 | <- | Minus |
X | 17146798..17147200 | 16..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:28 Download gff for
BO06957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17037735..17037804 | 635..705 | 97 | <- | Minus |
arm_X | 17038651..17038749 | 536..634 | 100 | <- | Minus |
arm_X | 17039049..17039165 | 419..535 | 100 | <- | Minus |
arm_X | 17040831..17041233 | 16..418 | 100 | | Minus |
BO06957.complete Sequence
718 bp (718 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630609
> BO06957.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCT
TCGAGGAGCCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTG
GAGACAAATGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGG
CCGCTGGTCTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATT
ACATCTCGGTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGA
CGTTATGCCGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCG
TTTGACCTGCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGA
TGGCCTGCCGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACC
GGGGAGAACCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACC
CCGTGAGGACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGG
CCGTCGATGTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTG
TGCACTGGAGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGA
GTGCCTGGCTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGT
ACGCCATCAAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGT
GCAAGCTTTCTAGACCAT
BO06957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RD | 687 | CG8922-PD | 1..684 | 17..700 | 3420 | 100 | Plus |
RpS5a-RC | 687 | CG8922-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
RpS5a-RB | 687 | CG8922-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RA | 864 | CG8922-RA | 61..746 | 15..700 | 3430 | 100 | Plus |
RpS5a-RD | 809 | CG8922-RD | 7..691 | 16..700 | 3425 | 100 | Plus |
RpS5a-RC | 1380 | CG8922-RC | 578..1262 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17146798..17147200 | 418..16 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 14900952..14901358 | 536..130 | 970 | 82.6 | Minus |
X | 23542271 | X | 17145015..17145137 | 536..414 | 615 | 100 | Minus |
3R | 32079331 | 3R | 14900530..14900697 | 700..533 | 525 | 87.5 | Minus |
X | 23542271 | X | 17144617..17144718 | 635..534 | 510 | 100 | Minus |
X | 23542271 | X | 17143706..17143773 | 700..633 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:46 has no hits.
BO06957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:54 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:46 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 51..740 | 15..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:24 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 63..746 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:54 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 51..740 | 15..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:53 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 63..746 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:53 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17143704..17143771 | 635..702 | 97 | <- | Minus |
X | 17144618..17144716 | 536..634 | 100 | <- | Minus |
X | 17145016..17145132 | 419..535 | 100 | <- | Minus |
X | 17146798..17147199 | 17..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:24 Download gff for
BO06957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17037737..17037804 | 635..702 | 97 | <- | Minus |
arm_X | 17038651..17038749 | 536..634 | 100 | <- | Minus |
arm_X | 17039049..17039165 | 419..535 | 100 | <- | Minus |
arm_X | 17040831..17041232 | 17..418 | 100 | | Minus |
BO06957.pep Sequence
Translation from 16 to 718
> BO06957.pep
MAEVAENVVETFEEPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCD
DVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSL
MMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDST
RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADE
LINAAKGSSNSYAIKKKDELERVAKSNRASFLDH
BO06957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-PD | 228 | CG8922-PD | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5a-PC | 228 | CG8922-PC | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5a-PB | 228 | CG8922-PB | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5a-PA | 228 | CG8922-PA | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5b-PA | 230 | CG7014-PA | 1..230 | 4..228 | 929 | 79.1 | Plus |