Clone Sequence Records
BO06958.3prime Sequence
677 bp (676 high quality bases) assembled on 2005-12-03
> BO06958.3prime
ATGGTCTAGAAAGCTTGCCTTGGCACCCGGCTTTTTGGTGCCCACATCGG
CTGCCTTCTTTTCCGCCTCCCGCTTGGCGGCCGCCTCCTCGCGCTGCTGC
CGGATCAAAGCCAATCTGGCCAGATCGGCCTTAGCCTCGGTGGTTTTACC
AGCAGCATGGAGTTTCTCGTAACGCTGGCGCGCTCTCTGCTTTTCGATCT
GTTCGCGTTCGCGGCGAGAAAGCTCCGGCTTGGGATTACCGCCGGCACCG
GCTGGCCCGTCGTCCAGCTTGATGGCCGATAGCTTTTGTGTGGCCTTCTT
GGTCACCCGGTTGGGATTCTCGATTTCGATGAGTGAGGCCACGCCCTTCT
TGGCATCGCGCGCTTCCGCTTCGGAGTCATCGTCGGAATCCTCGCCAGAC
TCCGATTCCGAGGAACTTGCCGCACCGGCGCCCGCCGCTGATCGAGACTT
TTGATTGCGATTCACGGGCGCTTTACGTGTGGCGGGTGCCTTGGCTTTGG
ACGCAGAGGAACTGGCTTTGCCGCCGGCAGCGTCTTTATCGTCGCTATCT
GATCCCGAGCCGCTGGTCTGGTCGCTATCCTCCTCCGATTCCTGTTGCAG
TTCCTCGGGAGATGTGAAATGGCGACTGCGACCTTTGTGGTTGACGAACT
TTCCTCGTGGCATGTCGACTGATAACT
BO06958.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-PA | 648 | CG11444-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
CG4438-PA | 570 | CG4438-RA | 410..497 | 176..89 | 190 | 88.6 | Minus |
CG4438-PA | 570 | CG4438-RA | 274..328 | 348..294 | 175 | 92.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 1282 | CG11444-RB | 416..1061 | 664..19 | 3230 | 100 | Minus |
CG11444-RA | 1081 | CG11444-RA | 215..860 | 664..19 | 3230 | 100 | Minus |
CG4438-RB | 922 | CG4438-RB | 571..741 | 189..19 | 420 | 83 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4553338..4553983 | 19..664 | 3230 | 100 | Plus |
2L | 23513712 | 2L | 9397180..9397350 | 19..189 | 420 | 83 | Plus |
2L | 23513712 | 2L | 9397617..9397747 | 534..664 | 325 | 83.2 | Plus |
2L | 23513712 | 2L | 9397397..9397498 | 272..373 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:53:23 has no hits.
BO06958.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:55 Download gff for
BO06958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 18..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:39 Download gff for
BO06958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 18..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:47 Download gff for
BO06958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..860 | 19..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:04 Download gff for
BO06958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..860 | 19..673 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:04 Download gff for
BO06958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4553338..4553988 | 19..673 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:47 Download gff for
BO06958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4447371..4448021 | 19..673 | 99 | | Plus |
BO06958.5prime Sequence
677 bp (676 high quality bases) assembled on 2005-12-03
> BO06958.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGGCAAGCTTTCTAGACC
BO06958.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-PA | 648 | CG11444-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG4438-PA | 570 | CG4438-RA | 410..497 | 504..591 | 190 | 88.6 | Plus |
CG4438-PA | 570 | CG4438-RA | 274..328 | 332..386 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 1282 | CG11444-RB | 416..1061 | 16..661 | 3230 | 100 | Plus |
CG11444-RA | 1081 | CG11444-RA | 215..860 | 16..661 | 3230 | 100 | Plus |
CG4438-RB | 922 | CG4438-RB | 571..741 | 491..661 | 420 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4553338..4553983 | 661..16 | 3230 | 100 | Minus |
2L | 23513712 | 2L | 9397180..9397350 | 661..491 | 420 | 83 | Minus |
2L | 23513712 | 2L | 9397617..9397747 | 146..16 | 325 | 83.2 | Minus |
2L | 23513712 | 2L | 9397397..9397498 | 408..307 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:24:18 has no hits.
BO06958.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:56 Download gff for
BO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:41 Download gff for
BO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:58 Download gff for
BO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..860 | 7..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:34 Download gff for
BO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..860 | 7..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:34 Download gff for
BO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4553338..4553988 | 7..661 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:58 Download gff for
BO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4447371..4448021 | 7..661 | 99 | | Minus |
BO06958.complete Sequence
679 bp (679 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630610
> BO06958.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGGCAAGCTTTCTAGACCAT
BO06958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 648 | CG11444-PB | 1..645 | 17..661 | 3225 | 100 | Plus |
CG11444-RA | 648 | CG11444-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG4438-RB | 570 | CG4438-PB | 397..567 | 491..661 | 420 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 1282 | CG11444-RB | 416..1061 | 16..661 | 3230 | 100 | Plus |
CG11444-RA | 1081 | CG11444-RA | 215..860 | 16..661 | 3230 | 100 | Plus |
CG4438-RB | 922 | CG4438-RB | 571..741 | 491..661 | 420 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4553338..4553983 | 661..16 | 3230 | 100 | Minus |
2L | 23513712 | 2L | 9397180..9397350 | 661..491 | 420 | 83 | Minus |
2L | 23513712 | 2L | 9397617..9397747 | 146..16 | 325 | 83.2 | Minus |
2L | 23513712 | 2L | 9397397..9397498 | 408..307 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:50:37 has no hits.
BO06958.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:36 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:21 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 354..1008 | 7..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:54 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 216..860 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:36 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 354..1008 | 7..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:16 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 216..860 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:16 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4553336..4553982 | 17..663 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:54 Download gff for
BO06958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4447369..4448015 | 17..663 | 99 | | Minus |
BO06958.pep Sequence
Translation from 16 to 679
> BO06958.pep
MPRGKFVNHKGRSRHFTSPEELQQESEEDSDQTSGSGSDSDDKDAAGGKA
SSSASKAKAPATRKAPVNRNQKSRSAAGAGAASSSESESGEDSDDDSEAE
ARDAKKGVASLIEIENPNRVTKKATQKLSAIKLDDGPAGAGGNPKPELSR
REREQIEKQRARQRYEKLHAAGKTTEAKADLARLALIRQQREEAAAKREA
EKKAADVGTKKPGAKASFLDH
BO06958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-PB | 215 | CG11444-PB | 1..215 | 1..215 | 1066 | 100 | Plus |
CG11444-PA | 215 | CG11444-PA | 1..215 | 1..215 | 1066 | 100 | Plus |
CG4438-PB | 189 | CG4438-PB | 1..189 | 1..215 | 573 | 62.3 | Plus |
CG4438-PA | 189 | CG4438-PA | 1..189 | 1..215 | 573 | 62.3 | Plus |