Clone BO06958 Report

Search the DGRC for BO06958

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG11444-RA
Protein status:BO06958.pep: validated full length
Sequenced Size:679

Clone Sequence Records

BO06958.3prime Sequence

677 bp (676 high quality bases) assembled on 2005-12-03

> BO06958.3prime
ATGGTCTAGAAAGCTTGCCTTGGCACCCGGCTTTTTGGTGCCCACATCGG
CTGCCTTCTTTTCCGCCTCCCGCTTGGCGGCCGCCTCCTCGCGCTGCTGC
CGGATCAAAGCCAATCTGGCCAGATCGGCCTTAGCCTCGGTGGTTTTACC
AGCAGCATGGAGTTTCTCGTAACGCTGGCGCGCTCTCTGCTTTTCGATCT
GTTCGCGTTCGCGGCGAGAAAGCTCCGGCTTGGGATTACCGCCGGCACCG
GCTGGCCCGTCGTCCAGCTTGATGGCCGATAGCTTTTGTGTGGCCTTCTT
GGTCACCCGGTTGGGATTCTCGATTTCGATGAGTGAGGCCACGCCCTTCT
TGGCATCGCGCGCTTCCGCTTCGGAGTCATCGTCGGAATCCTCGCCAGAC
TCCGATTCCGAGGAACTTGCCGCACCGGCGCCCGCCGCTGATCGAGACTT
TTGATTGCGATTCACGGGCGCTTTACGTGTGGCGGGTGCCTTGGCTTTGG
ACGCAGAGGAACTGGCTTTGCCGCCGGCAGCGTCTTTATCGTCGCTATCT
GATCCCGAGCCGCTGGTCTGGTCGCTATCCTCCTCCGATTCCTGTTGCAG
TTCCTCGGGAGATGTGAAATGGCGACTGCGACCTTTGTGGTTGACGAACT
TTCCTCGTGGCATGTCGACTGATAACT

BO06958.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-PA 648 CG11444-RA 1..645 663..19 3225 100 Minus
CG4438-PA 570 CG4438-RA 410..497 176..89 190 88.6 Minus
CG4438-PA 570 CG4438-RA 274..328 348..294 175 92.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1061 664..19 3230 100 Minus
CG11444-RA 1081 CG11444-RA 215..860 664..19 3230 100 Minus
CG4438-RB 922 CG4438-RB 571..741 189..19 420 83 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553338..4553983 19..664 3230 100 Plus
2L 23513712 2L 9397180..9397350 19..189 420 83 Plus
2L 23513712 2L 9397617..9397747 534..664 325 83.2 Plus
2L 23513712 2L 9397397..9397498 272..373 255 83.3 Plus
Blast to na_te.dros performed on 2015-02-12 23:53:23 has no hits.

BO06958.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:55 Download gff for BO06958.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 18..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:39 Download gff for BO06958.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 18..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:47 Download gff for BO06958.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..860 19..673 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:04 Download gff for BO06958.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..860 19..673 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:04 Download gff for BO06958.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4553338..4553988 19..673 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:47 Download gff for BO06958.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447371..4448021 19..673 99   Plus

BO06958.5prime Sequence

677 bp (676 high quality bases) assembled on 2005-12-03

> BO06958.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGGCAAGCTTTCTAGACC

BO06958.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-PA 648 CG11444-RA 1..645 17..661 3225 100 Plus
CG4438-PA 570 CG4438-RA 410..497 504..591 190 88.6 Plus
CG4438-PA 570 CG4438-RA 274..328 332..386 175 92.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1061 16..661 3230 100 Plus
CG11444-RA 1081 CG11444-RA 215..860 16..661 3230 100 Plus
CG4438-RB 922 CG4438-RB 571..741 491..661 420 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553338..4553983 661..16 3230 100 Minus
2L 23513712 2L 9397180..9397350 661..491 420 83 Minus
2L 23513712 2L 9397617..9397747 146..16 325 83.2 Minus
2L 23513712 2L 9397397..9397498 408..307 255 83.3 Minus
Blast to na_te.dros performed on 2015-02-13 05:24:18 has no hits.

BO06958.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:04:56 Download gff for BO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 17..662 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:41 Download gff for BO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:58 Download gff for BO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..860 7..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:34 Download gff for BO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..860 7..661 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:34 Download gff for BO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4553338..4553988 7..661 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:58 Download gff for BO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447371..4448021 7..661 99   Minus

BO06958.complete Sequence

679 bp (679 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630610

> BO06958.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGGCAAGCTTTCTAGACCAT

BO06958.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 648 CG11444-PB 1..645 17..661 3225 100 Plus
CG11444-RA 648 CG11444-PA 1..645 17..661 3225 100 Plus
CG4438-RB 570 CG4438-PB 397..567 491..661 420 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1061 16..661 3230 100 Plus
CG11444-RA 1081 CG11444-RA 215..860 16..661 3230 100 Plus
CG4438-RB 922 CG4438-RB 571..741 491..661 420 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553338..4553983 661..16 3230 100 Minus
2L 23513712 2L 9397180..9397350 661..491 420 83 Minus
2L 23513712 2L 9397617..9397747 146..16 325 83.2 Minus
2L 23513712 2L 9397397..9397498 408..307 255 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 00:50:37 has no hits.

BO06958.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:36 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 1..648 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:21 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 354..1008 7..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:54 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 216..860 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:36 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 354..1008 7..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:16 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 216..860 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:16 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
X 4553336..4553982 17..663 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:54 Download gff for BO06958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447369..4448015 17..663 99   Minus

BO06958.pep Sequence

Translation from 16 to 679

> BO06958.pep
MPRGKFVNHKGRSRHFTSPEELQQESEEDSDQTSGSGSDSDDKDAAGGKA
SSSASKAKAPATRKAPVNRNQKSRSAAGAGAASSSESESGEDSDDDSEAE
ARDAKKGVASLIEIENPNRVTKKATQKLSAIKLDDGPAGAGGNPKPELSR
REREQIEKQRARQRYEKLHAAGKTTEAKADLARLALIRQQREEAAAKREA
EKKAADVGTKKPGAKASFLDH

BO06958.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-PB 215 CG11444-PB 1..215 1..215 1066 100 Plus
CG11444-PA 215 CG11444-PA 1..215 1..215 1066 100 Plus
CG4438-PB 189 CG4438-PB 1..189 1..215 573 62.3 Plus
CG4438-PA 189 CG4438-PA 1..189 1..215 573 62.3 Plus