Clone Sequence Records
BO06967.3prime Sequence
935 bp (802 high quality bases) assembled on 2005-12-03
> BO06967.3prime
ATGGTCTAGAAAGCTTGCTTCGGCATCGGTCGTACTATTATCGGTTTCTT
CTGATCCTTCGGCGGTGGCTCCTTTGCAGGCTCCGTTCAATGGCACATAT
GTGGACAGGTCGTCGTCGGACTTGCATCCCTGACGTGACTCATCGAAGAA
TGTATCGGCCGGGCAGGTGTTCAAAGTGGCCTCGCCCTGGCTGTTGCAAT
AGTAGTAGGTGGAGCAGTTATTCGAATCGACGGCGTTTACAAACGTCGAC
GTAGCATACTGGCATCGATTGCATCCCGCCACCGGAGTGGCGACCTGGCG
GGACACACAGTACCCTAAACTGTCGTCGTAGTAGTCGCCAGTGGGGCAGT
AGGTGGCCACATTTTTGCCGTTCGTGCACACATAATAGGTGCCACACACC
TTGGGATCGGCTGACTTGGCACCGTTCGTGGAGCAGGAAACTGCGGCATC
GCTCAGCGGAATGTTGGTCACACGGCTGCAGACGGAGGCACTTTCGTAGG
TACATTGATTGGCGAGCACGTTGTATGCAGTTTGATTGTTTGCAGAGCAT
TTACCCGACTGCAAAACGAGTCCGGTGGAGGTGGACTCGCAGTAGTGCCA
GGTGGAGCAGCTCTCAGTATCGCCGAAATATTGGCCAGGTGGCACGACAT
CGCATAGTGATTCTAGCACGGTTTCATTAGTACCTTGAGTGTTGGAGCAG
GTTCCATAAACGCAGGCGAGTGTGGTGGTATCGAATTTCTGGTTCACCGG
GCAGTTTCCGGAGCCCGCCGACTTGCCCTCAAGGCAGTAGAACCATCCAC
CACAAACGGCAGTGTTTGGCACCCAGGTGTTATTCTTGCCAGCACAGGGA
TTCTCAACGCCCCAATAGCAGTCCACCTCGCTGCTTGGATAGCAGGAGGA
TCTCTTGTAGTCGTACGAGTAGCCTGATTGGCACG
BO06967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-PA | 1110 | CG7298-RA | 191..1107 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-RA | 1323 | CG7298-RA | 276..1192 | 935..19 | 4585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20202201..20202710 | 19..528 | 2550 | 100 | Plus |
| 3L | 28110227 | 3L | 20202913..20203320 | 528..935 | 2040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:46:01 has no hits.
BO06967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:11 Download gff for
BO06967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-PA | 191..1110 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:42:59 Download gff for
BO06967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-PA | 191..1110 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:14 Download gff for
BO06967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 276..1197 | 13..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:41 Download gff for
BO06967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 276..1197 | 13..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:41 Download gff for
BO06967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20202196..20202710 | 13..528 | 99 | <- | Plus |
| 3L | 20202914..20203320 | 529..935 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:14 Download gff for
BO06967.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20195296..20195810 | 13..528 | 99 | <- | Plus |
| arm_3L | 20196014..20196420 | 529..935 | 100 | | Plus |
BO06967.5prime Sequence
981 bp (812 high quality bases) assembled on 2005-12-03
> BO06967.5prime
GAAGTTATCAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGT
GCCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTAC
AACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAG
CATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGC
AGTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGC
TATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGC
TGGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGT
TCTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAAC
CAGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAA
CACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGC
CACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTAC
TGCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGC
AAACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAA
GTGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCA
GTTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGG
CACCTATTATGTGTGCACGAACGGCAAANATGTGGCCACCTACTGCCCCA
CTGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTC
GCCACTCCGGTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTT
TGTAAACGCCGTCGATTCGAATAACTGCTCCACCTACTACTATTGCAACA
GCCAAGGCGAGGCCACTTTGACACCCTGCCC
BO06967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-PA | 1110 | CG7298-RA | 1..955 | 17..971 | 4731 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-RA | 1323 | CG7298-RA | 86..1050 | 17..981 | 4754 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20202913..20203506 | 614..21 | 2970 | 100 | Minus |
| 3L | 28110227 | 3L | 20202343..20202710 | 981..614 | 1769 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:53:01 has no hits.
BO06967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:12 Download gff for
BO06967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-PA | 1..965 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:00 Download gff for
BO06967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-PA | 1..965 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:24 Download gff for
BO06967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1050 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:49 Download gff for
BO06967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1050 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:49 Download gff for
BO06967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20202343..20202710 | 614..981 | 98 | <- | Minus |
| 3L | 20202914..20203508 | 18..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:24 Download gff for
BO06967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20195443..20195810 | 614..981 | 98 | <- | Minus |
| arm_3L | 20196014..20196608 | 18..613 | 99 | | Minus |
BO06967.complete Sequence
1141 bp (1141 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630611
> BO06967.complete
GAAGTTATCAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGT
GCCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTAC
AACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAG
CATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGC
AGTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGC
TATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGC
TGGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGT
TCTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAAC
CAGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAA
CACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGC
CACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTAC
TGCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGC
AAACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAA
GTGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCA
GTTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGG
CACCTATTATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCA
CTGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTC
GCCACTCCGGTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTT
TGTAAACGCCGTCGATTCGAATAACTGCTCCACCTACTACTATTGCAACA
GCCAGGGCGAGGCCACTTTGAACACCTGCCCGGCCGATACATTCTTCGAT
GAGTCACGTCAGGGATGCAAGTCCGACGACGACCTGTCCACATATGTGCC
ATTGAACGGAGCCTGCAAAGGAGCCACCGCCGAAGGATCAGAAGAAACCG
ATAATAGTACGACCGATGCCGAAGCAAGCTTTCTAGACCAT
BO06967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-RA | 1110 | CG7298-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-RA | 1323 | CG7298-RA | 86..1192 | 17..1123 | 5535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20202913..20203506 | 614..21 | 2970 | 100 | Minus |
| 3L | 28110227 | 3L | 20202201..20202710 | 1123..614 | 2550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:28:52 has no hits.
BO06967.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:38 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 1..1110 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:24 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 85..1196 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:33 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1192 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:38 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 85..1196 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:26 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1192 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:26 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20202199..20202710 | 614..1125 | 99 | <- | Minus |
| 3L | 20202914..20203508 | 17..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:33 Download gff for
BO06967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20195299..20195810 | 614..1125 | 99 | <- | Minus |
| arm_3L | 20196014..20196608 | 17..613 | 99 | | Minus |
BO06967.pep Sequence
Translation from 16 to 1141
> BO06967.pep
MTGKLLLATILCLMGGQALGDAILEGNYNVTAVCTAVKVGTQLGSIESCQ
TYYVCQSTGPVQSSCQSGYSYDYKRSSCYPSSEVDCYWGVENPCAGKNNT
WVPNTAVCGGWFYCLEGKSAGSGNCPVNQKFDTTTLACVYGTCSNTQGTN
ETVLESLCDVVPPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSANNQTA
YNVLANQCTYESASVCSRVTNIPLSDAAVSCSTNGAKSADPKVCGTYYVC
TNGKNVATYCPTGDYYDDSLGYCVSRQVATPVAGCNRCQYATSTFVNAVD
SNNCSTYYYCNSQGEATLNTCPADTFFDESRQGCKSDDDLSTYVPLNGAC
KGATAEGSEETDNSTTDAEASFLDH
BO06967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-PA | 369 | CG7298-PA | 1..369 | 1..369 | 2036 | 100 | Plus |
| CG7290-PB | 419 | CG7290-PB | 6..359 | 8..368 | 526 | 33.8 | Plus |
| CG7290-PA | 419 | CG7290-PA | 6..359 | 8..368 | 526 | 33.8 | Plus |
| CG6996-PC | 364 | CG6996-PC | 23..353 | 28..366 | 309 | 27.6 | Plus |
| CG17147-PB | 337 | CG17147-PB | 14..325 | 5..336 | 308 | 27.4 | Plus |
