Clone Sequence Records
BO06973.3prime Sequence
407 bp (406 high quality bases) assembled on 2005-12-03
> BO06973.3prime
ATGGTCTAGAAAGCTTGCTTTGGCGGCCGGAGCAGATCCTTCGCTCTGCT
GAGAGTCATTAAACTGTTTGTGCCACTCGAGATTCATCTTTGTGACGGAT
TCTCCTTTCTTGGCGGCCTGCTTGCCACTGTACACCATAATGGCGCATCC
CACGGCGGTGAGTGCGATCATTATGTTGGCCAGGCGGATGCGCATTTTGT
TGCGGCAGCGCTCCATGACATCCTGACTAACGAAATTGGGAATCTCGGAC
TGCGACTTGTATTTGCCGGTCCAAACCAACATACGGCGCTCCAGATTGTT
TGGCTCGTGGTTCTTGATCGTCTCTCGCAACATCTGACTGGTGCCGAAGG
ATCTACGCACCAAGGCGCCAATTAACCCCGTTTTGCTTAGCATGTCGACT
GATAACT
BO06973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-PA | 378 | CG9231-RA | 1..375 | 393..19 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..463 | 393..19 | 1875 | 100 | Minus |
| CG9231-RA | 814 | CG9231-RA | 56..430 | 393..19 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585477..19585686 | 19..228 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 19585749..19585915 | 227..393 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:11:23 has no hits.
BO06973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:24 Download gff for
BO06973.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 18..393 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:15 Download gff for
BO06973.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 18..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:11 Download gff for
BO06973.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..430 | 19..400 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:22 Download gff for
BO06973.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..430 | 19..400 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:22 Download gff for
BO06973.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585477..19585684 | 19..226 | 100 | <- | Plus |
| 3L | 19585749..19585922 | 227..400 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:11 Download gff for
BO06973.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578577..19578784 | 19..226 | 100 | <- | Plus |
| arm_3L | 19578849..19579022 | 227..400 | 98 | | Plus |
BO06973.5prime Sequence
407 bp (406 high quality bases) assembled on 2005-12-03
> BO06973.5prime
GAAGTTATCAGTCGACATGCTAAGCAAAACGGGGTTAATTGGCGCCTTGG
TGCGTAGATCCTTCGGCACCAGTCAGATGTTGCGAGAGACGATCAAGAAC
CACGAGCCAAACAATCTGGAGCGCCGTATGTTGGTTTGGACCGGCAAATA
CAAGTCGCAGTCCGAGATTCCCAATTTCGTTAGTCAGGATGTCATGGAGC
GCTGCCGCAACAAAATGCGCATCCGCCTGGCCAACATAATGATCGCACTC
ACCGCCGTGGGATGCGCCATTATGGTGTACAGTGGCAAGCAGGCCGCCAA
GAAAGGAGAATCCGTCACAAAGATGAATCTCGAGTGGCACAAACAGTTTA
ATGACTCTCAGCAGAGCGAAGGATCTGCTCCGGCCGCCAAAGCAAGCTTT
CTAGACC
BO06973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-PA | 378 | CG9231-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..463 | 17..391 | 1875 | 100 | Plus |
| CG9231-RA | 814 | CG9231-RA | 56..430 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585477..19585686 | 391..182 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 19585749..19585915 | 183..17 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:52:23 has no hits.
BO06973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:25 Download gff for
BO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:16 Download gff for
BO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:54 Download gff for
BO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..430 | 10..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:02 Download gff for
BO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..430 | 10..391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:02 Download gff for
BO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585477..19585684 | 184..391 | 100 | <- | Minus |
| 3L | 19585749..19585922 | 10..183 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:54 Download gff for
BO06973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578577..19578784 | 184..391 | 100 | <- | Minus |
| arm_3L | 19578849..19579022 | 10..183 | 98 | | Minus |
BO06973.complete Sequence
409 bp (409 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630613
> BO06973.complete
GAAGTTATCAGTCGACATGCTAAGCAAAACGGGGTTAATTGGCGCCTTGG
TGCGTAGATCCTTCGGCACCAGTCAGATGTTGCGAGAGACGATCAAGAAC
CACGAGCCAAACAATCTGGAGCGCCGTATGTTGGTTTGGACCGGCAAATA
CAAGTCGCAGTCCGAGATTCCCAATTTCGTTAGTCAGGATGTCATGGAGC
GCTGCCGCAACAAAATGCGCATCCGCCTGGCCAACATAATGATCGCACTC
ACCGCCGTGGGATGCGCCATTATGGTGTACAGTGGCAAGCAGGCCGCCAA
GAAAGGAGAATCCGTCACAAAGATGAATCTCGAGTGGCACAAACAGTTTA
ATGACTCTCAGCAGAGCGAAGGATCTGCTCCGGCCGCCAAAGCAAGCTTT
CTAGACCAT
BO06973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 378 | CG9231-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
| CG9231-RA | 378 | CG9231-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..463 | 17..391 | 1875 | 100 | Plus |
| CG9231-RA | 814 | CG9231-RA | 56..430 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585477..19585686 | 391..182 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 19585749..19585915 | 183..17 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:45 has no hits.
BO06973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:29 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 1..378 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:00 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 307..688 | 10..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:13 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 56..430 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:30 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 307..688 | 10..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:22 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 56..430 | 17..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:22 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585475..19585684 | 184..393 | 99 | <- | Minus |
| 3L | 19585749..19585915 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:13 Download gff for
BO06973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578575..19578784 | 184..393 | 99 | <- | Minus |
| arm_3L | 19578849..19579015 | 17..183 | 100 | | Minus |
BO06973.pep Sequence
Translation from 16 to 409
> BO06973.pep
MLSKTGLIGALVRRSFGTSQMLRETIKNHEPNNLERRMLVWTGKYKSQSE
IPNFVSQDVMERCRNKMRIRLANIMIALTAVGCAIMVYSGKQAAKKGESV
TKMNLEWHKQFNDSQQSEGSAPAAKASFLDH
BO06973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-PB | 125 | CG9231-PB | 1..125 | 1..125 | 638 | 100 | Plus |
| CG9231-PA | 125 | CG9231-PA | 1..125 | 1..125 | 638 | 100 | Plus |
