Clone Sequence Records
BO06974.3prime Sequence
886 bp (818 high quality bases) assembled on 2005-12-03
> BO06974.3prime
ATGGTCTAGAAAGCTTGCCTCGGTCACTTTCCAAATTTTAATGGTGCCAT
CATCGCTGCATGATATCAGTTGCCCGGCCACCACAGGATTCCACTGCACC
GAGTTTACGTCCTGATCGTGAGCGCCTTCCTCCGCGGTTATCTGCTCGAA
CGTGGGTTCGTCTGGCTTGGAGTCGCTGCTCTCCTTAAAGATACGAATGC
CGTCGTCGCCACAGGCAGTCGCTATCAGACCTGTAAGCTTGCACCAGGAC
ACGTCGTAGATAGCCCGCGAGTGCTGCCCGGACACTGTGCACACGCACTT
CCACACGGTTTGCTGGTCGGGCGTAGCCACTCCGGCTGTATTTCCGGGAT
GGTAGGCCCTCCAAATCTTTATTGTGGTGTCATCGCTACAGGAAACCAGG
CGCTCGCCATCAGCATCGAAGTCAATGCCCCAAACCGTGCTTGTGTGTGA
AGTAAGAGTGGCTGTGCAATCCCAGTCGTTGTCTATGGGCTCCTCTGCGA
ACATTTTTATGGTATTGTCGTACGAGGCGGAGGCCAAAATGTCCTTGGTT
GGATGCCACACCACTCTCTTCACGTCCTGTGTGTGCGGGTTCAAAACGGC
GGCGCACTCGAACTCATCATCGCCGGCAACCTCCCAGATCCACACGGACT
TGTCCCGCGAACAGGTGGCCAGTAGTCCGCCGGATCGCGACCAGCTAACG
CTCTTCACCTCGTTTTCGTGACCCTCCAATGTTGCGTTGCATTCGAATTC
TCCCGAGGATTTCGACCAGATCGCCGTGGTGGCATCAAAGCTGGCCGAGG
CCAAGTACTGACCGCATGGAGACCATCGGATCTCGCGAATAGTGCGCTTG
TGGCCATCGGATAGGATGGTCTTTGTGCTCCAAGTG
BO06974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12797-PA | 1008 | CG12797-RA | 138..1005 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 227..1094 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14853955..14854822 | 19..886 | 4340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:26:31 has no hits.
BO06974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:26 Download gff for
BO06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 138..1008 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:17 Download gff for
BO06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 138..1008 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:26 Download gff for
BO06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 227..1097 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:34 Download gff for
BO06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 227..1097 | 15..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:34 Download gff for
BO06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14853952..14854822 | 15..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:26 Download gff for
BO06974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741457..10742327 | 15..886 | 99 | | Plus |
BO06974.5prime Sequence
944 bp (694 high quality bases) assembled on 2005-12-03
> BO06974.5prime
GAAGTTATCAGTCGACATGGGACGTTTAATTCTGGAACACACGCTGCAGG
GCCACAAGGGGCGCATCTGGGGAGTGGCATGGCATCCTAAGGGCAACGTA
TTCGCCTCGTGCGGCGAGGACAAAGCCATCCGCATTTGGTCGCTGACCGG
GAACACTTGGAGCACAAAGACCATCCTATCCGATGGCCACAAGCGCACTA
TTCGCGAGATCCGATGGTCTCCATGCGGTCAGTACTTGGCCTCGGCCAGC
TTTGATGCCACCACGGCGATCTGGTCGAAATCCTCGGGAGAATTCGAATG
CAACGCAACATTGGAGGGTCACGAAAACGAGGTGAAGAGCGTTAGCTGGT
CGCGATCCGGCGGACTACTGGCCACCTGTTCGCGGGACAAGTCCGTGTGG
ATCTGGGAGGTTGCCGGCGATGATGAGTTCGAGTGCGCCGCCGTTTTGAA
CCCGCACACACAGGACGTGAAGAGAGTGGTGTGGCATCCAACCAAGGACA
TTTTGGCCTCCGCCTCGTACGACAATACCATAAAAATGTTCGCAGAGGAG
CCCATAGACAACGACTGGGATTGCACAGCCACTCTTACTTCACACACAAG
CACGGTTTGGGGCATTGACTTCGATGCTGATGGCGAGCGCCTGGTTTCCT
GTAGCGATGACACCACAATAAAGATTTGGAGGGCCTACCATCCCGGAAAT
ACAGCCGGAGTGGCTACGCCCGACCAGCAAACCGTGTGGAAGTGCGTGTG
CACAGTGTCCGGGCAGCACTCGCGGGCTATCTACGACGTGTCCTGGTGCA
AGCTTACAGGTCTGATAGCGACTGCCTGTGGCGACGACGGCATTCGTATC
TTTAAGGAGAGCAGCGACTCCAAGCCAGACGAACCCACGTTCGAGCAGAT
AACCGCGGAGGAAGGCGCTCACGATCAGGACGTAAACTCGGTGC
BO06974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12797-PA | 1008 | CG12797-RA | 1..928 | 17..944 | 4640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 90..1017 | 17..944 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14854032..14854959 | 944..17 | 4640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:06:49 has no hits.
BO06974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:27 Download gff for
BO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 1..928 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:19 Download gff for
BO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 1..928 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:28 Download gff for
BO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 85..1017 | 9..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:05 Download gff for
BO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 85..1017 | 9..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:05 Download gff for
BO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14854032..14854964 | 9..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:28 Download gff for
BO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741537..10742469 | 9..944 | 99 | | Minus |
BO06974.complete Sequence
1039 bp (1039 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630614
> BO06974.complete
GAAGTTATCAGTCGACATGGGACGTTTAATTCTGGAACACACGCTGCAGG
GCCACAAGGGGCGCATCTGGGGAGTGGCATGGCATCCTAAGGGCAACGTA
TTCGCCTCGTGCGGCGAGGACAAAGCCATCCGCATTTGGTCGCTGACCGG
GAACACTTGGAGCACAAAGACCATCCTATCCGATGGCCACAAGCGCACTA
TTCGCGAGATCCGATGGTCTCCATGCGGTCAGTACTTGGCCTCGGCCAGC
TTTGATGCCACCACGGCGATCTGGTCGAAATCCTCGGGAGAATTCGAATG
CAACGCAACATTGGAGGGTCACGAAAACGAGGTGAAGAGCGTTAGCTGGT
CGCGATCCGGCGGACTACTGGCCACCTGTTCGCGGGACAAGTCCGTGTGG
ATCTGGGAGGTTGCCGGCGATGATGAGTTCGAGTGCGCCGCCGTTTTGAA
CCCGCACACACAGGACGTGAAGAGAGTGGTGTGGCATCCAACCAAGGACA
TTTTGGCCTCCGCCTCGTACGACAATACCATAAAAATGTTCGCAGAGGAG
CCCATAGACAACGACTGGGATTGCACAGCCACTCTTACTTCACACACAAG
CACGGTTTGGGGCATTGACTTCGATGCTGATGGCGAGCGCCTGGTTTCCT
GTAGCGATGACACCACAATAAAGATTTGGAGGGCCTACCATCCCGGAAAT
ACAGCCGGAGTGGCTACGCCCGACCAGCAAACCGTGTGGAAGTGCGTGTG
CACAGTGTCCGGGCAGCACTCGCGGGCTATCTACGACGTGTCCTGGTGCA
AGCTTACAGGTCTGATAGCGACTGCCTGTGGCGACGACGGCATTCGTATC
TTTAAGGAGAGCAGCGACTCCAAGCCAGACGAACCCACGTTCGAGCAGAT
AACCGCGGAGGAAGGCGCTCACGATCAGGACGTAAACTCGGTGCAGTGGA
ATCCTGTGGTGGCCGGGCAACTGATATCATGCAGCGATGATGGCACCATT
AAAATTTGGAAAGTGACCGAGGCAAGCTTTCTAGACCAT
BO06974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1008 | CG12797-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 90..1094 | 17..1021 | 5025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14853955..14854959 | 1021..17 | 5025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:21:53 has no hits.
BO06974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:41 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 1..1008 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:28 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 105..1117 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:09 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 90..1094 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:41 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 105..1117 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:34 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 90..1094 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:34 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14853953..14854959 | 17..1023 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:09 Download gff for
BO06974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741458..10742464 | 17..1023 | 99 | | Minus |
BO06974.pep Sequence
Translation from 16 to 1039
> BO06974.pep
MGRLILEHTLQGHKGRIWGVAWHPKGNVFASCGEDKAIRIWSLTGNTWST
KTILSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLE
GHENEVKSVSWSRSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQD
VKRVVWHPTKDILASASYDNTIKMFAEEPIDNDWDCTATLTSHTSTVWGI
DFDADGERLVSCSDDTTIKIWRAYHPGNTAGVATPDQQTVWKCVCTVSGQ
HSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKPDEPTFEQITAEEG
AHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVTEASFLDH
BO06974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-PA | 335 | CG12797-PA | 1..335 | 1..335 | 1838 | 100 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PA | 411 | CG8440-PA | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 103..409 | 9..332 | 247 | 25.6 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 103..409 | 9..332 | 247 | 25.6 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 103..409 | 9..332 | 247 | 25.6 | Plus |
