Clone BO06982 Report

Search the DGRC for BO06982

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS7-RA
Protein status:BO06982.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO06982.3prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-03

> BO06982.3prime
ATGGTCTAGAAAGCTTGCGCTCCATCGGTAATGTGCGTAGGCGCGGTTGC
TTTCGCACAGCCTGTGCAGATCGTCCTTTCGCTTGATGACCCTTCCCTGG
CCATGGGCTGCGTCGAGAATCTCCCAGGCCAACTTTTCCGGCAGGGACAC
CTTACGCTCCTTCTCGCGGGCAGCTTCCAAGAGCCACTTCATGGCCAGAA
AATATGACCGCTTCGTGGTGATGGGAACAGGGACTTGATAGGTGACACCA
CCACGTTTTATGGCGGTCACTTGAAGGAGCGGTCGGCAGTTTTCAACCGC
TTGTTTCAGAAGCGTTTCGGGATTGGTGTTTATGGTTGTCTTCTCCCCTT
TGGCCAGATTCATGTGCTCCGTCTGGGTTCGTTTTATTAGCTCCAGCGTC
TTGGACAAAAGCGTTCTGGCCAAGGCACTGTTCCCCTTTTTCGTTATATA
ATTGATCATTTTATGTTTTGTATCGTCGTGAAAGATGGTATCAGACGATT
TGTTGACCGCCGCCTTGATGGGCACATGGTAAAGCTTGGACAGATCATTC
TTTTGCTCTAGTTGTTTATATTTTTGTACAATTGGTTCGACATAGTGTGT
GGGATACACCGACATCAATCGAAGGCAGCTGAGCCTTGAAGTTTTCTCTG
CAATCCTACCTAAAAGCGACATGTCGACTGATAACT

BO06982.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5108-PA 657 mRpS7-RA 1..654 672..19 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 917 CG5108-RB 81..736 674..19 3280 100 Minus
mRpS7-RA 789 CG5108-RA 81..736 674..19 3280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10386860..10387471 630..19 3060 100 Minus
2L 23513712 2L 10386742..10386787 674..629 230 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:15:45 has no hits.

BO06982.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:40 Download gff for BO06982.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:36 Download gff for BO06982.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5108-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:44 Download gff for BO06982.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..739 15..682 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:14 Download gff for BO06982.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..739 15..682 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:14 Download gff for BO06982.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10386736..10386787 629..682 92 -> Minus
2L 10386862..10387474 15..628 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:44 Download gff for BO06982.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10386736..10386787 629..682 92 -> Minus
arm_2L 10386862..10387474 15..628 99   Minus

BO06982.5prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-03

> BO06982.5prime
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCGCAAGCTTTCTAGACC

BO06982.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5108-PA 657 mRpS7-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 917 CG5108-RB 81..736 15..670 3280 100 Plus
mRpS7-RA 789 CG5108-RA 81..736 15..670 3280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10386860..10387471 59..670 3060 100 Plus
2L 23513712 2L 10386742..10386787 15..60 230 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:11:49 has no hits.

BO06982.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:41 Download gff for BO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:37 Download gff for BO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5108-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:13 Download gff for BO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..739 7..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:26 Download gff for BO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..739 7..674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:26 Download gff for BO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10386736..10386787 7..60 92 -> Plus
2L 10386862..10387474 61..674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:13 Download gff for BO06982.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10386736..10386787 7..60 92 -> Plus
arm_2L 10386862..10387474 61..674 99   Plus

BO06982.complete Sequence

688 bp (688 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630615

> BO06982.complete
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCGCAAGCTTTCTAGACCAT

BO06982.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 657 CG5108-PB 1..654 17..670 3270 100 Plus
mRpS7-RA 657 CG5108-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 917 CG5108-RB 81..736 15..670 3280 100 Plus
mRpS7-RA 789 CG5108-RA 81..736 15..670 3280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10386860..10387471 59..670 3060 100 Plus
2L 23513712 2L 10386742..10386787 15..60 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:04:33 has no hits.

BO06982.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:02 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:03 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 73..737 7..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:17 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 83..736 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:03 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 73..737 7..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:20 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 83..736 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:20 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10386744..10386787 17..60 100 -> Plus
2L 10386862..10387471 61..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:17 Download gff for BO06982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10386744..10386787 17..60 100 -> Plus
arm_2L 10386862..10387471 61..672 99   Plus

BO06982.pep Sequence

Translation from 16 to 688

> BO06982.pep
MSLLGRIAEKTSRLSCLRLMSVYPTHYVEPIVQKYKQLEQKNDLSKLYHV
PIKAAVNKSSDTIFHDDTKHKMINYITKKGNSALARTLLSKTLELIKRTQ
TEHMNLAKGEKTTINTNPETLLKQAVENCRPLLQVTAIKRGGVTYQVPVP
ITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAAHGQGRVIKRKD
DLHRLCESNRAYAHYRWSASFLDH

BO06982.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-PB 218 CG5108-PB 1..218 1..218 1124 100 Plus
mRpS7-PA 218 CG5108-PA 1..218 1..218 1124 100 Plus