Clone Sequence Records
BO06982.3prime Sequence
686 bp (685 high quality bases) assembled on 2005-12-03
> BO06982.3prime
ATGGTCTAGAAAGCTTGCGCTCCATCGGTAATGTGCGTAGGCGCGGTTGC
TTTCGCACAGCCTGTGCAGATCGTCCTTTCGCTTGATGACCCTTCCCTGG
CCATGGGCTGCGTCGAGAATCTCCCAGGCCAACTTTTCCGGCAGGGACAC
CTTACGCTCCTTCTCGCGGGCAGCTTCCAAGAGCCACTTCATGGCCAGAA
AATATGACCGCTTCGTGGTGATGGGAACAGGGACTTGATAGGTGACACCA
CCACGTTTTATGGCGGTCACTTGAAGGAGCGGTCGGCAGTTTTCAACCGC
TTGTTTCAGAAGCGTTTCGGGATTGGTGTTTATGGTTGTCTTCTCCCCTT
TGGCCAGATTCATGTGCTCCGTCTGGGTTCGTTTTATTAGCTCCAGCGTC
TTGGACAAAAGCGTTCTGGCCAAGGCACTGTTCCCCTTTTTCGTTATATA
ATTGATCATTTTATGTTTTGTATCGTCGTGAAAGATGGTATCAGACGATT
TGTTGACCGCCGCCTTGATGGGCACATGGTAAAGCTTGGACAGATCATTC
TTTTGCTCTAGTTGTTTATATTTTTGTACAATTGGTTCGACATAGTGTGT
GGGATACACCGACATCAATCGAAGGCAGCTGAGCCTTGAAGTTTTCTCTG
CAATCCTACCTAAAAGCGACATGTCGACTGATAACT
BO06982.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5108-PA | 657 | mRpS7-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 917 | CG5108-RB | 81..736 | 674..19 | 3280 | 100 | Minus |
mRpS7-RA | 789 | CG5108-RA | 81..736 | 674..19 | 3280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10386860..10387471 | 630..19 | 3060 | 100 | Minus |
2L | 23513712 | 2L | 10386742..10386787 | 674..629 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:15:45 has no hits.
BO06982.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:40 Download gff for
BO06982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:36 Download gff for
BO06982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5108-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:44 Download gff for
BO06982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..739 | 15..682 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:14 Download gff for
BO06982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..739 | 15..682 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:14 Download gff for
BO06982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10386736..10386787 | 629..682 | 92 | -> | Minus |
2L | 10386862..10387474 | 15..628 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:44 Download gff for
BO06982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10386736..10386787 | 629..682 | 92 | -> | Minus |
arm_2L | 10386862..10387474 | 15..628 | 99 | | Minus |
BO06982.5prime Sequence
686 bp (685 high quality bases) assembled on 2005-12-03
> BO06982.5prime
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCGCAAGCTTTCTAGACC
BO06982.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5108-PA | 657 | mRpS7-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 917 | CG5108-RB | 81..736 | 15..670 | 3280 | 100 | Plus |
mRpS7-RA | 789 | CG5108-RA | 81..736 | 15..670 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10386860..10387471 | 59..670 | 3060 | 100 | Plus |
2L | 23513712 | 2L | 10386742..10386787 | 15..60 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:11:49 has no hits.
BO06982.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:41 Download gff for
BO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:37 Download gff for
BO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5108-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:13 Download gff for
BO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..739 | 7..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:26 Download gff for
BO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..739 | 7..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:26 Download gff for
BO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10386736..10386787 | 7..60 | 92 | -> | Plus |
2L | 10386862..10387474 | 61..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:13 Download gff for
BO06982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10386736..10386787 | 7..60 | 92 | -> | Plus |
arm_2L | 10386862..10387474 | 61..674 | 99 | | Plus |
BO06982.complete Sequence
688 bp (688 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630615
> BO06982.complete
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCGCAAGCTTTCTAGACCAT
BO06982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 657 | CG5108-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
mRpS7-RA | 657 | CG5108-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 917 | CG5108-RB | 81..736 | 15..670 | 3280 | 100 | Plus |
mRpS7-RA | 789 | CG5108-RA | 81..736 | 15..670 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10386860..10387471 | 59..670 | 3060 | 100 | Plus |
2L | 23513712 | 2L | 10386742..10386787 | 15..60 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:04:33 has no hits.
BO06982.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:02 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:03 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 73..737 | 7..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:17 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 83..736 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:03 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 73..737 | 7..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:20 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 83..736 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:20 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10386744..10386787 | 17..60 | 100 | -> | Plus |
2L | 10386862..10387471 | 61..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:17 Download gff for
BO06982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10386744..10386787 | 17..60 | 100 | -> | Plus |
arm_2L | 10386862..10387471 | 61..672 | 99 | | Plus |
BO06982.pep Sequence
Translation from 16 to 688
> BO06982.pep
MSLLGRIAEKTSRLSCLRLMSVYPTHYVEPIVQKYKQLEQKNDLSKLYHV
PIKAAVNKSSDTIFHDDTKHKMINYITKKGNSALARTLLSKTLELIKRTQ
TEHMNLAKGEKTTINTNPETLLKQAVENCRPLLQVTAIKRGGVTYQVPVP
ITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAAHGQGRVIKRKD
DLHRLCESNRAYAHYRWSASFLDH
BO06982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-PB | 218 | CG5108-PB | 1..218 | 1..218 | 1124 | 100 | Plus |
mRpS7-PA | 218 | CG5108-PA | 1..218 | 1..218 | 1124 | 100 | Plus |