Clone Sequence Records
BO06984.3prime Sequence
773 bp (772 high quality bases) assembled on 2005-12-03
> BO06984.3prime
ATGGTCTAGAAAGCTTGCCCAGGCCAGCGGAGTGCCGTCGTAGTTGACAA
AACCGCCGTTCTGTTTCTCGCCCAGCTTGCTGATGGTCTGCACAATTTGT
CCCGTGCTGGTGGGCACGTCCAAGGGGGCACTGGAGCCACCCATGTCGGT
TTTCACCCAGCCAGGATGCAGACTGACGCACATGATGCGTTGCGGATACA
GATCCACGCTCAACGACTTGGTGGCCGCATTCAAGGCCGACTTAGAGGTG
CGATAGGCGTACATTCCGCCGTCCGTGTTGCCCTGGATGGAGCCAAGGAT
CGAGGACATGTTAATAATGGCGGCACGGCCCACGCCCATCGGCTGGGATT
CGTTCGCTTTGGCTGCCTTCTTAAGGAGCGGCAGACACGCCTTGGCCAGC
ATGATGGGCACAACCGTGTTGGTCTGCAAGGTGTCGAGCAGCTCCTGCGA
TCGAACGGCCGTTATCCTGGCCGATTTGGGCGCTATGCCGGCATTGTTGA
AGAGCACATTGAGGCCTTGGTCCTTGGTCACGCCCTCGATGTCGGCGACT
AGCTTGTCATAGGCATCGAAATTTCTCAAATCAATCTCAAGTATGTGTAT
GTTCGAGTGGTTCTTGGCTAGATCCTCCAGCTCCTTTGCCTGCTCGCGAT
TCCGGCAGGTGGTAAATAGATGCTGCGGCGGCTGGGGAAGATTGAGCAGC
GCCTTGACCAGGCCCAGACCCAATCCTCGATTGCAGCCGGTTATCAGGAT
GGAGTTCATGTCGACTGATAACT
BO06984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10964-PA | 744 | sni-RA | 1..741 | 759..19 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 1761 | CG10964-RB | 939..1681 | 761..19 | 3715 | 100 | Minus |
sni-RA | 1105 | CG10964-RA | 283..1025 | 761..19 | 3715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8241581..8242144 | 19..582 | 2820 | 100 | Plus |
X | 23542271 | X | 8242950..8243078 | 633..761 | 645 | 100 | Plus |
X | 23542271 | X | 8242205..8242258 | 582..635 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:00:44 has no hits.
BO06984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:44 Download gff for
BO06984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-PA | 1..744 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:42 Download gff for
BO06984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10964-PA | 1..744 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:12 Download gff for
BO06984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1028 | 15..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:42 Download gff for
BO06984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1028 | 15..761 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:42 Download gff for
BO06984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8241577..8242143 | 15..581 | 99 | <- | Plus |
X | 8242205..8242256 | 582..633 | 100 | <- | Plus |
X | 8242951..8243078 | 634..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:12 Download gff for
BO06984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8135610..8136176 | 15..581 | 99 | <- | Plus |
arm_X | 8136238..8136289 | 582..633 | 100 | <- | Plus |
arm_X | 8136984..8137111 | 634..761 | 100 | | Plus |
BO06984.5prime Sequence
773 bp (752 high quality bases) assembled on 2005-12-03
> BO06984.5prime
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGGCAAGCTTTCTAGACC
BO06984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10964-PA | 744 | sni-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 1761 | CG10964-RB | 939..1681 | 15..757 | 3715 | 100 | Plus |
sni-RA | 1105 | CG10964-RA | 283..1025 | 15..757 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8241581..8242144 | 757..194 | 2820 | 100 | Minus |
X | 23542271 | X | 8242950..8243078 | 143..15 | 645 | 100 | Minus |
X | 23542271 | X | 8242205..8242258 | 194..141 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:53:56 has no hits.
BO06984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:45 Download gff for
BO06984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-PA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:43 Download gff for
BO06984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10964-PA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:29 Download gff for
BO06984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1028 | 15..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:36 Download gff for
BO06984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1028 | 15..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:36 Download gff for
BO06984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8241577..8242143 | 195..761 | 99 | <- | Minus |
X | 8242205..8242256 | 143..194 | 100 | <- | Minus |
X | 8242951..8243078 | 15..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:29 Download gff for
BO06984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8135610..8136176 | 195..761 | 99 | <- | Minus |
arm_X | 8136238..8136289 | 143..194 | 100 | <- | Minus |
arm_X | 8136984..8137111 | 15..142 | 100 | | Minus |
BO06984.complete Sequence
775 bp (775 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630617
> BO06984.complete
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGGCAAGCTTTCTAGACCAT
BO06984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 744 | CG10964-PB | 1..741 | 17..757 | 3705 | 100 | Plus |
sni-RA | 744 | CG10964-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 1761 | CG10964-RB | 939..1681 | 15..757 | 3715 | 100 | Plus |
sni-RA | 1105 | CG10964-RA | 283..1025 | 15..757 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8241581..8242144 | 757..194 | 2820 | 100 | Minus |
X | 23542271 | X | 8242950..8243078 | 143..15 | 645 | 100 | Minus |
X | 23542271 | X | 8242205..8242258 | 194..141 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:06:37 has no hits.
BO06984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:59 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:39 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 227..972 | 15..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:58 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 285..1025 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:59 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 227..972 | 15..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:10 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 285..1025 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:10 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8241579..8242143 | 195..759 | 99 | <- | Minus |
X | 8242205..8242256 | 143..194 | 100 | <- | Minus |
X | 8242951..8243076 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:58 Download gff for
BO06984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8135612..8136176 | 195..759 | 99 | <- | Minus |
arm_X | 8136238..8136289 | 143..194 | 100 | <- | Minus |
arm_X | 8136984..8137109 | 17..142 | 100 | | Minus |
BO06984.pep Sequence
Translation from 16 to 775
> BO06984.pep
MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN
HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT
AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN
MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG
WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAWASF
LDH
BO06984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-PB | 247 | CG10964-PB | 1..247 | 1..247 | 1264 | 100 | Plus |
sni-PA | 247 | CG10964-PA | 1..247 | 1..247 | 1264 | 100 | Plus |
CG7322-PC | 242 | CG7322-PC | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PB | 242 | CG7322-PB | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PA | 242 | CG7322-PA | 10..188 | 4..210 | 166 | 30.4 | Plus |