Clone BO06984 Report

Search the DGRC for BO06984

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptsni-RA
Protein status:BO06984.pep: validated full length
Sequenced Size:775

Clone Sequence Records

BO06984.3prime Sequence

773 bp (772 high quality bases) assembled on 2005-12-03

> BO06984.3prime
ATGGTCTAGAAAGCTTGCCCAGGCCAGCGGAGTGCCGTCGTAGTTGACAA
AACCGCCGTTCTGTTTCTCGCCCAGCTTGCTGATGGTCTGCACAATTTGT
CCCGTGCTGGTGGGCACGTCCAAGGGGGCACTGGAGCCACCCATGTCGGT
TTTCACCCAGCCAGGATGCAGACTGACGCACATGATGCGTTGCGGATACA
GATCCACGCTCAACGACTTGGTGGCCGCATTCAAGGCCGACTTAGAGGTG
CGATAGGCGTACATTCCGCCGTCCGTGTTGCCCTGGATGGAGCCAAGGAT
CGAGGACATGTTAATAATGGCGGCACGGCCCACGCCCATCGGCTGGGATT
CGTTCGCTTTGGCTGCCTTCTTAAGGAGCGGCAGACACGCCTTGGCCAGC
ATGATGGGCACAACCGTGTTGGTCTGCAAGGTGTCGAGCAGCTCCTGCGA
TCGAACGGCCGTTATCCTGGCCGATTTGGGCGCTATGCCGGCATTGTTGA
AGAGCACATTGAGGCCTTGGTCCTTGGTCACGCCCTCGATGTCGGCGACT
AGCTTGTCATAGGCATCGAAATTTCTCAAATCAATCTCAAGTATGTGTAT
GTTCGAGTGGTTCTTGGCTAGATCCTCCAGCTCCTTTGCCTGCTCGCGAT
TCCGGCAGGTGGTAAATAGATGCTGCGGCGGCTGGGGAAGATTGAGCAGC
GCCTTGACCAGGCCCAGACCCAATCCTCGATTGCAGCCGGTTATCAGGAT
GGAGTTCATGTCGACTGATAACT

BO06984.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10964-PA 744 sni-RA 1..741 759..19 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 1761 CG10964-RB 939..1681 761..19 3715 100 Minus
sni-RA 1105 CG10964-RA 283..1025 761..19 3715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241581..8242144 19..582 2820 100 Plus
X 23542271 X 8242950..8243078 633..761 645 100 Plus
X 23542271 X 8242205..8242258 582..635 270 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:00:44 has no hits.

BO06984.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:44 Download gff for BO06984.3prime
Subject Subject Range Query Range Percent Splice Strand
sni-PA 1..744 15..759 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:42 Download gff for BO06984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10964-PA 1..744 15..759 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:12 Download gff for BO06984.3prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1028 15..761 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:42 Download gff for BO06984.3prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1028 15..761 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:42 Download gff for BO06984.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8241577..8242143 15..581 99 <- Plus
X 8242205..8242256 582..633 100 <- Plus
X 8242951..8243078 634..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:12 Download gff for BO06984.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135610..8136176 15..581 99 <- Plus
arm_X 8136238..8136289 582..633 100 <- Plus
arm_X 8136984..8137111 634..761 100   Plus

BO06984.5prime Sequence

773 bp (752 high quality bases) assembled on 2005-12-03

> BO06984.5prime
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGGCAAGCTTTCTAGACC

BO06984.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10964-PA 744 sni-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 1761 CG10964-RB 939..1681 15..757 3715 100 Plus
sni-RA 1105 CG10964-RA 283..1025 15..757 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241581..8242144 757..194 2820 100 Minus
X 23542271 X 8242950..8243078 143..15 645 100 Minus
X 23542271 X 8242205..8242258 194..141 270 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:53:56 has no hits.

BO06984.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:45 Download gff for BO06984.5prime
Subject Subject Range Query Range Percent Splice Strand
sni-PA 1..744 17..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:43 Download gff for BO06984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10964-PA 1..744 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:29 Download gff for BO06984.5prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1028 15..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:36 Download gff for BO06984.5prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1028 15..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:36 Download gff for BO06984.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8241577..8242143 195..761 99 <- Minus
X 8242205..8242256 143..194 100 <- Minus
X 8242951..8243078 15..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:29 Download gff for BO06984.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135610..8136176 195..761 99 <- Minus
arm_X 8136238..8136289 143..194 100 <- Minus
arm_X 8136984..8137111 15..142 100   Minus

BO06984.complete Sequence

775 bp (775 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630617

> BO06984.complete
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGGCAAGCTTTCTAGACCAT

BO06984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 744 CG10964-PB 1..741 17..757 3705 100 Plus
sni-RA 744 CG10964-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 1761 CG10964-RB 939..1681 15..757 3715 100 Plus
sni-RA 1105 CG10964-RA 283..1025 15..757 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241581..8242144 757..194 2820 100 Minus
X 23542271 X 8242950..8243078 143..15 645 100 Minus
X 23542271 X 8242205..8242258 194..141 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:06:37 has no hits.

BO06984.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:59 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:39 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 227..972 15..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:58 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 285..1025 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:59 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 227..972 15..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:10 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 285..1025 17..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:10 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
X 8241579..8242143 195..759 99 <- Minus
X 8242205..8242256 143..194 100 <- Minus
X 8242951..8243076 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:58 Download gff for BO06984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135612..8136176 195..759 99 <- Minus
arm_X 8136238..8136289 143..194 100 <- Minus
arm_X 8136984..8137109 17..142 100   Minus

BO06984.pep Sequence

Translation from 16 to 775

> BO06984.pep
MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN
HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT
AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN
MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG
WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAWASF
LDH

BO06984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
sni-PB 247 CG10964-PB 1..247 1..247 1264 100 Plus
sni-PA 247 CG10964-PA 1..247 1..247 1264 100 Plus
CG7322-PC 242 CG7322-PC 10..188 4..210 166 30.4 Plus
CG7322-PB 242 CG7322-PB 10..188 4..210 166 30.4 Plus
CG7322-PA 242 CG7322-PA 10..188 4..210 166 30.4 Plus