Clone BO06989 Report

Search the DGRC for BO06989

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptMED4-RA
Protein status:BO06989.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO06989.5prime Sequence

806 bp (785 high quality bases) assembled on 2005-12-03

> BO06989.5prime
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCAT
GTCCACGGATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGGCAAGCTTTC
TAGACC

BO06989.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8609-PA 777 MED4-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 941 CG8609-RA 84..857 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249613..7250149 790..254 2685 100 Minus
3L 28110227 3L 7250207..7250444 254..17 1190 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:15:00 has no hits.

BO06989.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:54 Download gff for BO06989.5prime
Subject Subject Range Query Range Percent Splice Strand
MED4-PA 1..777 17..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:54 Download gff for BO06989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8609-PA 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:58 Download gff for BO06989.5prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..857 11..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:23:31 Download gff for BO06989.5prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..857 11..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:23:31 Download gff for BO06989.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7250208..7250450 11..253 98   Minus
3L 7249613..7250149 254..790 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:58 Download gff for BO06989.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7242713..7243249 254..790 100 <- Minus
arm_3L 7243308..7243550 11..253 98   Minus

BO06989.3prime Sequence

806 bp (805 high quality bases) assembled on 2005-12-03

> BO06989.3prime
ATGGTCTAGAAAGCTTGCCTGCGAATCGCTGGAACTGGAGCTTGAGCTAT
CCGTGGACATGACCTCCACATCGTCCTGGGCGCGCGTCTCCAGGGCCACT
GTGTTCCCAGAGGCGCCCATGGTCATGTGCAGCTCTCCGAGATTCCAGTT
AAACTGGTTCTGGAAGGCATTGGGCACCTCGCCGCCGGCGCCACTGCCAC
TCCCACTTCCTGCGCTACCGGACAGCGTTCGCTGCTGCTCCGAGGGCATG
CCGCTGTTCTGGTGGGTCACTGTTCCGCCGTTGATGTTCTGCTCGGATTT
ACCCAGCAGCCCGTTGCGCATCTCAATGTCCGTGGGATAGGGACGCCGCA
GGTCACCTATGCACCAGGTGAGCGGAGCACTGACCGCATTGGCGGAGCTA
ATCCGATGTGCGTATTTGATGAGCTCCTCGGATGAAACCGGTCGTTTGTT
GGCCTGATTGATGCTGGCCAGTTTCTGTCGCGCTTGGAAGATGGCCGTGG
ACAGTATGAGCTCCGCATCCTTTAGCGACTTTTGCAGCTTCTGGATCTCA
CGGTCGTGCACCTCGACCTTAGCGCGCAGTTGGTCCATCGCCTCCTCCAC
TTTCGCCTGCTCCTCCGCCAGTTCCAGCATTTTGCGAAATTCCTCATCTT
TGGCCACCAGCAAATCCAACAGGTCCACCAATTCGGTGCTGGAGATCTTC
TGGTGCGCCTGCTCGATCAACTCCTTGGCAATCATCTCAATGTCGTCGAT
CAGGAGCAGAAGGCGCTCTTTTGTGCTCAAATGAAACGACATGTCGACTG
ATAACT

BO06989.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8609-PA 777 MED4-RA 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 941 CG8609-RA 84..857 792..19 3870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249613..7250149 19..555 2685 100 Plus
3L 28110227 3L 7250207..7250444 555..792 1190 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:08:40 has no hits.

BO06989.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:52 Download gff for BO06989.3prime
Subject Subject Range Query Range Percent Splice Strand
MED4-PA 1..777 18..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:52 Download gff for BO06989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8609-PA 1..777 18..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:38 Download gff for BO06989.3prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..857 19..798 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:23 Download gff for BO06989.3prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..857 19..798 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:23 Download gff for BO06989.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7249613..7250149 19..555 100 <- Plus
3L 7250208..7250450 556..798 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:38 Download gff for BO06989.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7242713..7243249 19..555 100 <- Plus
arm_3L 7243308..7243550 556..798 98   Plus

BO06989.complete Sequence

808 bp (808 high quality bases) assembled on 2005-12-20

GenBank Submission: FJ630618

> BO06989.complete
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCAT
GTCCACGGATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGGCAAGCTTTC
TAGACCAT

BO06989.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 777 CG8609-PA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 941 CG8609-RA 84..857 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249613..7250149 790..254 2685 100 Minus
3L 28110227 3L 7250207..7250444 254..17 1190 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:49:01 has no hits.

BO06989.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:34 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:19 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 74..853 11..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:17 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 84..857 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:35 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 74..853 11..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:46 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 84..857 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:46 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7249611..7250149 254..792 99 <- Minus
3L 7250208..7250444 17..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:17 Download gff for BO06989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7242711..7243249 254..792 99 <- Minus
arm_3L 7243308..7243544 17..253 100   Minus

BO06989.pep Sequence

Translation from 16 to 808

> BO06989.pep
MSFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDE
EFRKMLELAEEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTA
IFQARQKLASINQANKRPVSSEELIKYAHRISSANAVSAPLTWCIGDLRR
PYPTDIEMRNGLLGKSEQNINGGTVTHQNSGMPSEQQRTLSGSAGSGSGS
GAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALETRAQDDVEVMSTDSS
SSSSSDSQASFLDH

BO06989.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-PA 258 CG8609-PA 1..258 1..258 1281 100 Plus