Clone Sequence Records
BO06989.5prime Sequence
806 bp (785 high quality bases) assembled on 2005-12-03
> BO06989.5prime
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCAT
GTCCACGGATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGGCAAGCTTTC
TAGACC
BO06989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8609-PA | 777 | MED4-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 941 | CG8609-RA | 84..857 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7249613..7250149 | 790..254 | 2685 | 100 | Minus |
3L | 28110227 | 3L | 7250207..7250444 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:00 has no hits.
BO06989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:54 Download gff for
BO06989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-PA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:54 Download gff for
BO06989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8609-PA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:58 Download gff for
BO06989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..857 | 11..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:23:31 Download gff for
BO06989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..857 | 11..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:23:31 Download gff for
BO06989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7250208..7250450 | 11..253 | 98 | | Minus |
3L | 7249613..7250149 | 254..790 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:58 Download gff for
BO06989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7242713..7243249 | 254..790 | 100 | <- | Minus |
arm_3L | 7243308..7243550 | 11..253 | 98 | | Minus |
BO06989.3prime Sequence
806 bp (805 high quality bases) assembled on 2005-12-03
> BO06989.3prime
ATGGTCTAGAAAGCTTGCCTGCGAATCGCTGGAACTGGAGCTTGAGCTAT
CCGTGGACATGACCTCCACATCGTCCTGGGCGCGCGTCTCCAGGGCCACT
GTGTTCCCAGAGGCGCCCATGGTCATGTGCAGCTCTCCGAGATTCCAGTT
AAACTGGTTCTGGAAGGCATTGGGCACCTCGCCGCCGGCGCCACTGCCAC
TCCCACTTCCTGCGCTACCGGACAGCGTTCGCTGCTGCTCCGAGGGCATG
CCGCTGTTCTGGTGGGTCACTGTTCCGCCGTTGATGTTCTGCTCGGATTT
ACCCAGCAGCCCGTTGCGCATCTCAATGTCCGTGGGATAGGGACGCCGCA
GGTCACCTATGCACCAGGTGAGCGGAGCACTGACCGCATTGGCGGAGCTA
ATCCGATGTGCGTATTTGATGAGCTCCTCGGATGAAACCGGTCGTTTGTT
GGCCTGATTGATGCTGGCCAGTTTCTGTCGCGCTTGGAAGATGGCCGTGG
ACAGTATGAGCTCCGCATCCTTTAGCGACTTTTGCAGCTTCTGGATCTCA
CGGTCGTGCACCTCGACCTTAGCGCGCAGTTGGTCCATCGCCTCCTCCAC
TTTCGCCTGCTCCTCCGCCAGTTCCAGCATTTTGCGAAATTCCTCATCTT
TGGCCACCAGCAAATCCAACAGGTCCACCAATTCGGTGCTGGAGATCTTC
TGGTGCGCCTGCTCGATCAACTCCTTGGCAATCATCTCAATGTCGTCGAT
CAGGAGCAGAAGGCGCTCTTTTGTGCTCAAATGAAACGACATGTCGACTG
ATAACT
BO06989.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8609-PA | 777 | MED4-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 941 | CG8609-RA | 84..857 | 792..19 | 3870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7249613..7250149 | 19..555 | 2685 | 100 | Plus |
3L | 28110227 | 3L | 7250207..7250444 | 555..792 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:08:40 has no hits.
BO06989.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:05:52 Download gff for
BO06989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-PA | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:52 Download gff for
BO06989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8609-PA | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:38 Download gff for
BO06989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..857 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:23 Download gff for
BO06989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..857 | 19..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:23 Download gff for
BO06989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7249613..7250149 | 19..555 | 100 | <- | Plus |
3L | 7250208..7250450 | 556..798 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:38 Download gff for
BO06989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7242713..7243249 | 19..555 | 100 | <- | Plus |
arm_3L | 7243308..7243550 | 556..798 | 98 | | Plus |
BO06989.complete Sequence
808 bp (808 high quality bases) assembled on 2005-12-20
GenBank Submission: FJ630618
> BO06989.complete
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCAT
GTCCACGGATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGGCAAGCTTTC
TAGACCAT
BO06989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 777 | CG8609-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 941 | CG8609-RA | 84..857 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7249613..7250149 | 790..254 | 2685 | 100 | Minus |
3L | 28110227 | 3L | 7250207..7250444 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:01 has no hits.
BO06989.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:34 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:19 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 74..853 | 11..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:17 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 84..857 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:35 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 74..853 | 11..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:46 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 84..857 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:46 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7249611..7250149 | 254..792 | 99 | <- | Minus |
3L | 7250208..7250444 | 17..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:17 Download gff for
BO06989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7242711..7243249 | 254..792 | 99 | <- | Minus |
arm_3L | 7243308..7243544 | 17..253 | 100 | | Minus |
BO06989.pep Sequence
Translation from 16 to 808
> BO06989.pep
MSFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDE
EFRKMLELAEEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTA
IFQARQKLASINQANKRPVSSEELIKYAHRISSANAVSAPLTWCIGDLRR
PYPTDIEMRNGLLGKSEQNINGGTVTHQNSGMPSEQQRTLSGSAGSGSGS
GAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALETRAQDDVEVMSTDSS
SSSSSDSQASFLDH
BO06989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-PA | 258 | CG8609-PA | 1..258 | 1..258 | 1281 | 100 | Plus |