Clone BO06995 Report

Search the DGRC for BO06995

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:69
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG31988-RA
Protein status:BO06995.pep: validated full length
Sequenced Size:568

Clone Sequence Records

BO06995.3prime Sequence

566 bp (565 high quality bases) assembled on 2005-12-03

> BO06995.3prime
ATGGTCTAGAAAGCTTGCGCAATTGCAGGCGGGGCACACGGGCTTGTCCC
CGTCGATGGTGAAAGTCTGCGAGGTTATAGGATTCTCGCACTTGTTGCAC
CGGAAGCAATCGCGATGCCACTTCACGTTCATGGCGAGCACCGCTGAGTC
CGTTATAGGCTTCTCGCACTTGGCGCACCTGGCAGCAAAGAGGTCCTCGT
AATCCTTTTTGCAATAGGGCTTGCCGTCGCGCTCATAGAACGTTTGATTG
GCGAGCGGCTTTTTGCAGGCACCGCCGCAGCAAAAGCAATCTTCGTGCCA
GCTCTCCCCCATGGCGCAGATGGTTTTTTCAAGGATCGGCTTCTTGCAGC
CGGCACAGGTGTAGGTGTACCGCTCCACGAAGCACTTGTTGCACACTGGT
TCTCCGCTCTGAACATTGAAGGTGGCATCCAGGATCTGCTCATCGCAGTG
GTGGCACAGGAAGTGCTCCGGGTGCCACGTCTTGCCCAGGGCGGTGATCA
TACGCTTGGTGATGGCCTCCTGGCACTTGTGACACACAATGCTCTCAGTC
ATGTCGACTGATAACT

BO06995.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PA 537 CG31988-RA 1..534 552..19 2670 100 Minus
CG31624-PA 537 CG31624-RA 1..534 552..19 2420 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..923 552..19 2670 100 Minus
CG31988-RA 1014 CG31988-RA 297..830 552..19 2670 100 Minus
CG31624-RC 979 CG31624-RC 87..620 552..19 2520 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201719..21202252 19..552 2670 100 Plus
2L 23513712 2L 21199404..21199937 19..552 2520 98.1 Plus
2L 23513712 2L 19404347..19404402 445..500 190 89.3 Plus
Blast to na_te.dros performed on 2015-02-11 23:12:03 has no hits.

BO06995.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:04 Download gff for BO06995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 15..552 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:09 Download gff for BO06995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 15..552 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:16 Download gff for BO06995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 15..559 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:27 Download gff for BO06995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 15..559 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:27 Download gff for BO06995.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21201716..21202259 15..559 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:16 Download gff for BO06995.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201716..21202259 15..559 99   Plus

BO06995.5prime Sequence

566 bp (565 high quality bases) assembled on 2005-12-03

> BO06995.5prime
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
GCAAGCTTTCTAGACC

BO06995.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PA 537 CG31988-RA 1..534 17..550 2670 100 Plus
CG31624-PA 537 CG31624-RA 1..534 17..550 2420 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..923 17..550 2670 100 Plus
CG31988-RA 1014 CG31988-RA 297..830 17..550 2670 100 Plus
CG31624-RC 979 CG31624-RC 87..620 17..550 2520 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201719..21202252 550..17 2670 100 Minus
2L 23513712 2L 21199404..21199937 550..17 2520 98.1 Minus
2L 23513712 2L 19404347..19404402 124..69 190 89.3 Minus
Blast to na_te.dros performed on 2015-02-11 23:50:46 has no hits.

BO06995.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:05 Download gff for BO06995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 17..554 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:11 Download gff for BO06995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:25 Download gff for BO06995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 10..554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:31 Download gff for BO06995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 10..554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:31 Download gff for BO06995.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21201716..21202259 10..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:25 Download gff for BO06995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201716..21202259 10..554 99   Minus

BO06995.complete Sequence

568 bp (568 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ630620

> BO06995.complete
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
GCAAGCTTTCTAGACCAT

BO06995.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 537 CG31988-PB 1..534 17..550 2670 100 Plus
CG31988-RA 537 CG31988-PA 1..534 17..550 2670 100 Plus
CG31624-RC 537 CG31624-PC 1..534 17..550 2520 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..923 17..550 2670 100 Plus
CG31988-RA 1014 CG31988-RA 297..830 17..550 2670 100 Plus
CG31624-RC 979 CG31624-RC 87..620 17..550 2520 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201719..21202252 550..17 2670 100 Minus
2L 23513712 2L 21199404..21199937 550..17 2520 98.1 Minus
2L 23513712 2L 19404347..19404402 124..69 190 89.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:54:40 has no hits.

BO06995.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:43 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:31 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 323..866 10..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:05 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 297..830 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:43 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 323..866 10..554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:20 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 297..830 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:20 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21201717..21202252 17..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:05 Download gff for BO06995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201717..21202252 17..552 99   Minus

BO06995.pep Sequence

Translation from 16 to 568

> BO06995.pep
MTESIVCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSG
EPVCNKCFVERYTYTCAGCKKPILEKTICAMGESWHEDCFCCGGACKKPL
ANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITDSAVLAMNVKWHRDCF
RCNKCENPITSQTFTIDGDKPVCPACNCASFLDH

BO06995.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PB 178 CG31988-PB 1..178 1..178 1037 100 Plus
CG31988-PA 178 CG31988-PA 1..178 1..178 1037 100 Plus
CG31624-PC 178 CG31624-PC 1..178 1..178 1001 96.1 Plus
CG31624-PB 178 CG31624-PB 1..178 1..178 1001 96.1 Plus
CG31624-PA 178 CG31624-PA 1..178 1..178 1001 96.1 Plus