Clone Sequence Records
BO06995.3prime Sequence
566 bp (565 high quality bases) assembled on 2005-12-03
> BO06995.3prime
ATGGTCTAGAAAGCTTGCGCAATTGCAGGCGGGGCACACGGGCTTGTCCC
CGTCGATGGTGAAAGTCTGCGAGGTTATAGGATTCTCGCACTTGTTGCAC
CGGAAGCAATCGCGATGCCACTTCACGTTCATGGCGAGCACCGCTGAGTC
CGTTATAGGCTTCTCGCACTTGGCGCACCTGGCAGCAAAGAGGTCCTCGT
AATCCTTTTTGCAATAGGGCTTGCCGTCGCGCTCATAGAACGTTTGATTG
GCGAGCGGCTTTTTGCAGGCACCGCCGCAGCAAAAGCAATCTTCGTGCCA
GCTCTCCCCCATGGCGCAGATGGTTTTTTCAAGGATCGGCTTCTTGCAGC
CGGCACAGGTGTAGGTGTACCGCTCCACGAAGCACTTGTTGCACACTGGT
TCTCCGCTCTGAACATTGAAGGTGGCATCCAGGATCTGCTCATCGCAGTG
GTGGCACAGGAAGTGCTCCGGGTGCCACGTCTTGCCCAGGGCGGTGATCA
TACGCTTGGTGATGGCCTCCTGGCACTTGTGACACACAATGCTCTCAGTC
ATGTCGACTGATAACT
BO06995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-PA | 537 | CG31988-RA | 1..534 | 552..19 | 2670 | 100 | Minus |
CG31624-PA | 537 | CG31624-RA | 1..534 | 552..19 | 2420 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 1149 | CG31988-RB | 390..923 | 552..19 | 2670 | 100 | Minus |
CG31988-RA | 1014 | CG31988-RA | 297..830 | 552..19 | 2670 | 100 | Minus |
CG31624-RC | 979 | CG31624-RC | 87..620 | 552..19 | 2520 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21201719..21202252 | 19..552 | 2670 | 100 | Plus |
2L | 23513712 | 2L | 21199404..21199937 | 19..552 | 2520 | 98.1 | Plus |
2L | 23513712 | 2L | 19404347..19404402 | 445..500 | 190 | 89.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:12:03 has no hits.
BO06995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:04 Download gff for
BO06995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:09 Download gff for
BO06995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:16 Download gff for
BO06995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 15..559 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:27 Download gff for
BO06995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 15..559 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:27 Download gff for
BO06995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21201716..21202259 | 15..559 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:16 Download gff for
BO06995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21201716..21202259 | 15..559 | 99 | | Plus |
BO06995.5prime Sequence
566 bp (565 high quality bases) assembled on 2005-12-03
> BO06995.5prime
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
GCAAGCTTTCTAGACC
BO06995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-PA | 537 | CG31988-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
CG31624-PA | 537 | CG31624-RA | 1..534 | 17..550 | 2420 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 1149 | CG31988-RB | 390..923 | 17..550 | 2670 | 100 | Plus |
CG31988-RA | 1014 | CG31988-RA | 297..830 | 17..550 | 2670 | 100 | Plus |
CG31624-RC | 979 | CG31624-RC | 87..620 | 17..550 | 2520 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21201719..21202252 | 550..17 | 2670 | 100 | Minus |
2L | 23513712 | 2L | 21199404..21199937 | 550..17 | 2520 | 98.1 | Minus |
2L | 23513712 | 2L | 19404347..19404402 | 124..69 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:50:46 has no hits.
BO06995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:05 Download gff for
BO06995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:11 Download gff for
BO06995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:25 Download gff for
BO06995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 10..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:31 Download gff for
BO06995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 10..554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:31 Download gff for
BO06995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21201716..21202259 | 10..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:25 Download gff for
BO06995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21201716..21202259 | 10..554 | 99 | | Minus |
BO06995.complete Sequence
568 bp (568 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ630620
> BO06995.complete
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
GCAAGCTTTCTAGACCAT
BO06995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 537 | CG31988-PB | 1..534 | 17..550 | 2670 | 100 | Plus |
CG31988-RA | 537 | CG31988-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
CG31624-RC | 537 | CG31624-PC | 1..534 | 17..550 | 2520 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 1149 | CG31988-RB | 390..923 | 17..550 | 2670 | 100 | Plus |
CG31988-RA | 1014 | CG31988-RA | 297..830 | 17..550 | 2670 | 100 | Plus |
CG31624-RC | 979 | CG31624-RC | 87..620 | 17..550 | 2520 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21201719..21202252 | 550..17 | 2670 | 100 | Minus |
2L | 23513712 | 2L | 21199404..21199937 | 550..17 | 2520 | 98.1 | Minus |
2L | 23513712 | 2L | 19404347..19404402 | 124..69 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:54:40 has no hits.
BO06995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:43 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:31 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 323..866 | 10..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:05 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 297..830 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:43 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 323..866 | 10..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:20 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 297..830 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:20 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21201717..21202252 | 17..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:05 Download gff for
BO06995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21201717..21202252 | 17..552 | 99 | | Minus |
BO06995.pep Sequence
Translation from 16 to 568
> BO06995.pep
MTESIVCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSG
EPVCNKCFVERYTYTCAGCKKPILEKTICAMGESWHEDCFCCGGACKKPL
ANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITDSAVLAMNVKWHRDCF
RCNKCENPITSQTFTIDGDKPVCPACNCASFLDH
BO06995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-PB | 178 | CG31988-PB | 1..178 | 1..178 | 1037 | 100 | Plus |
CG31988-PA | 178 | CG31988-PA | 1..178 | 1..178 | 1037 | 100 | Plus |
CG31624-PC | 178 | CG31624-PC | 1..178 | 1..178 | 1001 | 96.1 | Plus |
CG31624-PB | 178 | CG31624-PB | 1..178 | 1..178 | 1001 | 96.1 | Plus |
CG31624-PA | 178 | CG31624-PA | 1..178 | 1..178 | 1001 | 96.1 | Plus |