Clone Sequence Records
BO07001.3prime Sequence
868 bp (827 high quality bases) assembled on 2005-12-03
> BO07001.3prime
ATGGTCTAGAAAGCTTGCCGAAGCAGTTCTGCGTTTGTACTCCGCACGGG
CATCCTCTATTTCATTAAGAAGATCTGCGTAGGTTGCATTCGCTCCGTCA
AAGTCAAGGATAGCAACGCAACAAATTTGCGCTCGCTTTTGGAGGGCATA
AGAAAGCTCCCTTCTCAGCAGAGGAAAGCAATAGGGCACTTGTTGCTGCT
GGCATTGGAATTTCAAGCCTTCTATAGTCGCATCTAGACCACTTTCGCCG
GGGCAGATTTCGCAGTCAGTGGCCAGGAACAACAATTTCACCTTGTTTAT
CCTTAGCCTCGCCAGAGCTTCTCGAACACCCAAAACCAGGCGGGGATGTG
CACGCGCTTTAATCTCGTTTTTGGCAAAGGCGCGCTTCTGAAATCGATCC
AGGTCCCTTAACAACTGAGTGGACAACTCCTTGAGGCGAGGACGGGTGCA
GTTGTCACAATAGCTTCTAAATCGCCGTGAGTGAATGGCATGTACTGTTT
TTGCTTGTGAAGGGTTGTTGGGTGCAGGGGTTTTACTAAGTGATAGGTTT
TGAACTTGTTGCTCCAGCGGAATAGCATTCGGATTGATATCTTGACCAAC
TACTGGGACTCCTTCAAGATCATTCTCTGCGACTTCTCTCTCCGCCTTCT
TTGAAGTGCGATATACACGTACGGACTTCTTCAACCTGGTGATCTTCTTC
TTGGGATCAAGGCGGGTTTTGCCCTTGGGTTTGTAAACTATGTAGCTACC
TCTTGTTATGGCTAAATGTGTCTTTTGAAGTTTATGTGCCTTTGTTTGCC
TTTGTGTTTTTGGTCTCGGCTTGATGACAAAGTCCAGAAGAGAGGTTTGC
TGCTCCCGTTTTCTGTGC
BO07001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7066-PA | 942 | CG7066-RA | 90..939 | 868..19 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 1055 | CG7066-RA | 126..975 | 868..19 | 4235 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8304282..8304686 | 868..464 | 2010 | 99.8 | Minus |
3L | 28110227 | 3L | 8304746..8304971 | 465..240 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 8305022..8305245 | 242..19 | 1120 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:30:30 has no hits.
BO07001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:09 Download gff for
BO07001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 90..942 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:16 Download gff for
BO07001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 90..942 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:00 Download gff for
BO07001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 126..984 | 10..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:13 Download gff for
BO07001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 126..984 | 10..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:13 Download gff for
BO07001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8304282..8304686 | 464..868 | 99 | -> | Minus |
3L | 8304748..8304968 | 243..463 | 100 | -> | Minus |
3L | 8305022..8305254 | 10..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:00 Download gff for
BO07001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8297382..8297786 | 464..868 | 99 | -> | Minus |
arm_3L | 8297848..8298068 | 243..463 | 100 | -> | Minus |
arm_3L | 8298122..8298354 | 10..242 | 98 | | Minus |
BO07001.5prime Sequence
907 bp (808 high quality bases) assembled on 2005-12-03
> BO07001.5prime
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTT
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTTGCGTGCTATCCTTGACTTTGACGGAGCGAATGCAACCTACGCAGA
TCTTCTT
BO07001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7066-PA | 942 | CG7066-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
CG7066-PA | 942 | CG7066-RA | 843..891 | 859..907 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 1055 | CG7066-RA | 37..927 | 17..907 | 4395 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8304193..8304686 | 17..510 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 8304746..8304971 | 509..734 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 8305022..8305197 | 732..907 | 805 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:07:13 has no hits.
BO07001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:10 Download gff for
BO07001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:17 Download gff for
BO07001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:34 Download gff for
BO07001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 31..927 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:34 Download gff for
BO07001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 31..927 | 9..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:34 Download gff for
BO07001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8304187..8304686 | 9..510 | 99 | -> | Plus |
3L | 8304748..8304968 | 511..731 | 100 | -> | Plus |
3L | 8305022..8305197 | 732..907 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:34 Download gff for
BO07001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8297287..8297786 | 9..510 | 99 | -> | Plus |
arm_3L | 8297848..8298068 | 511..731 | 100 | -> | Plus |
arm_3L | 8298122..8298297 | 732..907 | 98 | | Plus |
BO07001.complete Sequence
973 bp (973 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630621
> BO07001.complete
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTC
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGCAACCTACGCAGA
TCTTCTTAATGAAATAGAGGATGCCCGTGCGGAGTACAAACGCAGAACTG
CTTCGGCAAGCTTTCTAGACCAT
BO07001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 942 | CG7066-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 1055 | CG7066-RA | 37..975 | 17..955 | 4695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8304193..8304686 | 17..510 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 8304746..8304971 | 509..734 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 8305022..8305245 | 732..955 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:15:24 has no hits.
BO07001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:50 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 1..942 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:26 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 28..981 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:34 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 37..975 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:50 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 28..981 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:30 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 37..975 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:30 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8305022..8305245 | 732..957 | 99 | | Plus |
3L | 8304193..8304686 | 17..510 | 100 | -> | Plus |
3L | 8304748..8304968 | 511..731 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:34 Download gff for
BO07001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8297293..8297786 | 17..510 | 100 | -> | Plus |
arm_3L | 8297848..8298068 | 511..731 | 100 | -> | Plus |
arm_3L | 8298122..8298345 | 732..957 | 99 | | Plus |
BO07001.pep Sequence
Translation from 16 to 973
> BO07001.pep
MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK
TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR
TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS
QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK
ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI
EDARAEYKRRTASASFLDH
BO07001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-PA | 313 | CG7066-PA | 1..313 | 1..313 | 1604 | 100 | Plus |