Clone BO07001 Report

Search the DGRC for BO07001

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptSbp2-RA
Protein status:BO07001.pep: validated full length
Sequenced Size:973

Clone Sequence Records

BO07001.3prime Sequence

868 bp (827 high quality bases) assembled on 2005-12-03

> BO07001.3prime
ATGGTCTAGAAAGCTTGCCGAAGCAGTTCTGCGTTTGTACTCCGCACGGG
CATCCTCTATTTCATTAAGAAGATCTGCGTAGGTTGCATTCGCTCCGTCA
AAGTCAAGGATAGCAACGCAACAAATTTGCGCTCGCTTTTGGAGGGCATA
AGAAAGCTCCCTTCTCAGCAGAGGAAAGCAATAGGGCACTTGTTGCTGCT
GGCATTGGAATTTCAAGCCTTCTATAGTCGCATCTAGACCACTTTCGCCG
GGGCAGATTTCGCAGTCAGTGGCCAGGAACAACAATTTCACCTTGTTTAT
CCTTAGCCTCGCCAGAGCTTCTCGAACACCCAAAACCAGGCGGGGATGTG
CACGCGCTTTAATCTCGTTTTTGGCAAAGGCGCGCTTCTGAAATCGATCC
AGGTCCCTTAACAACTGAGTGGACAACTCCTTGAGGCGAGGACGGGTGCA
GTTGTCACAATAGCTTCTAAATCGCCGTGAGTGAATGGCATGTACTGTTT
TTGCTTGTGAAGGGTTGTTGGGTGCAGGGGTTTTACTAAGTGATAGGTTT
TGAACTTGTTGCTCCAGCGGAATAGCATTCGGATTGATATCTTGACCAAC
TACTGGGACTCCTTCAAGATCATTCTCTGCGACTTCTCTCTCCGCCTTCT
TTGAAGTGCGATATACACGTACGGACTTCTTCAACCTGGTGATCTTCTTC
TTGGGATCAAGGCGGGTTTTGCCCTTGGGTTTGTAAACTATGTAGCTACC
TCTTGTTATGGCTAAATGTGTCTTTTGAAGTTTATGTGCCTTTGTTTGCC
TTTGTGTTTTTGGTCTCGGCTTGATGACAAAGTCCAGAAGAGAGGTTTGC
TGCTCCCGTTTTCTGTGC

BO07001.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7066-PA 942 CG7066-RA 90..939 868..19 4225 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1055 CG7066-RA 126..975 868..19 4235 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304282..8304686 868..464 2010 99.8 Minus
3L 28110227 3L 8304746..8304971 465..240 1130 100 Minus
3L 28110227 3L 8305022..8305245 242..19 1120 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:30:30 has no hits.

BO07001.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:09 Download gff for BO07001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 90..942 16..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:16 Download gff for BO07001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 90..942 16..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:00 Download gff for BO07001.3prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 126..984 10..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:13 Download gff for BO07001.3prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 126..984 10..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:13 Download gff for BO07001.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8304282..8304686 464..868 99 -> Minus
3L 8304748..8304968 243..463 100 -> Minus
3L 8305022..8305254 10..242 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:00 Download gff for BO07001.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297382..8297786 464..868 99 -> Minus
arm_3L 8297848..8298068 243..463 100 -> Minus
arm_3L 8298122..8298354 10..242 98   Minus

BO07001.5prime Sequence

907 bp (808 high quality bases) assembled on 2005-12-03

> BO07001.5prime
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTT
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTTGCGTGCTATCCTTGACTTTGACGGAGCGAATGCAACCTACGCAGA
TCTTCTT

BO07001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7066-PA 942 CG7066-RA 1..838 17..854 4165 99.8 Plus
CG7066-PA 942 CG7066-RA 843..891 859..907 245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1055 CG7066-RA 37..927 17..907 4395 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304193..8304686 17..510 2470 100 Plus
3L 28110227 3L 8304746..8304971 509..734 1130 100 Plus
3L 28110227 3L 8305022..8305197 732..907 805 97.2 Plus
Blast to na_te.dros performed on 2015-02-12 07:07:13 has no hits.

BO07001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:10 Download gff for BO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:17 Download gff for BO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:34 Download gff for BO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 31..927 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:34 Download gff for BO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 31..927 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:34 Download gff for BO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8304187..8304686 9..510 99 -> Plus
3L 8304748..8304968 511..731 100 -> Plus
3L 8305022..8305197 732..907 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:34 Download gff for BO07001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297287..8297786 9..510 99 -> Plus
arm_3L 8297848..8298068 511..731 100 -> Plus
arm_3L 8298122..8298297 732..907 98   Plus

BO07001.complete Sequence

973 bp (973 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630621

> BO07001.complete
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTC
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGCAACCTACGCAGA
TCTTCTTAATGAAATAGAGGATGCCCGTGCGGAGTACAAACGCAGAACTG
CTTCGGCAAGCTTTCTAGACCAT

BO07001.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 942 CG7066-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1055 CG7066-RA 37..975 17..955 4695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304193..8304686 17..510 2470 100 Plus
3L 28110227 3L 8304746..8304971 509..734 1130 100 Plus
3L 28110227 3L 8305022..8305245 732..955 1120 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:15:24 has no hits.

BO07001.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:50 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:26 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 28..981 9..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:34 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 37..975 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:50 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 28..981 9..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:30 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 37..975 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:30 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8305022..8305245 732..957 99   Plus
3L 8304193..8304686 17..510 100 -> Plus
3L 8304748..8304968 511..731 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:34 Download gff for BO07001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297293..8297786 17..510 100 -> Plus
arm_3L 8297848..8298068 511..731 100 -> Plus
arm_3L 8298122..8298345 732..957 99   Plus

BO07001.pep Sequence

Translation from 16 to 973

> BO07001.pep
MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK
TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR
TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS
QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK
ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI
EDARAEYKRRTASASFLDH

BO07001.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-PA 313 CG7066-PA 1..313 1..313 1604 100 Plus