Clone BO07002 Report

Search the DGRC for BO07002

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptobst-E-RA
Protein status:BO07002.pep: validated full length
Sequenced Size:760

Clone Sequence Records

BO07002.3prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO07002.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCCTGGCGTGAAGACGAGCAGCCTTGA
TTTGGGCACCCTTTTCACGGATGGCACTGCTGCAGTTGGGCACGTTCTCG
ATGTCGTCGCACTGGTTCAGCTCCTGGTTGAAAGCCTGGTCCTCGCCGCA
GCCAATGCGACGCGGACGTCCCTCGATACAGATGAAGTACACCTGGCAAT
TGTCCTGCGACGGGTGGAAGGTGTAGTCAGCCTCCTGCTCGCCGAGCAGC
TCAGATCTGGGTGCCGGCGCTGGGCAGCGGAAGCCCAGGAAGGCCTCGGC
GTCACAGTCCTCCACCTGATCGGGCCAATCGCACTTGTAGGTGGCCGGAT
TCCAGGCCAGACCCTCGGGGCAGTCGAACACGAAGCCACGGCCCGCGGCG
CAGTTCATGAACTGTCCACAATGGCTGGCATCACCCATGCGATAGTATCC
GAACTGGTGGGGGCACTCATCCGTTGGCTGAGCGGCCTGCAGGCGGGCCT
GGCCCTGGGTGCACTCCACGTCGATCGGATAGCCGCAGGGGTAACCCGTG
GACTTTTCGTTGTACAGCAGACCGTCGGGGCAGAGCTTCTCCTCGGCCAC
TCCGTTCTTGCACTCAATGTAGGCATCGCAGGATCCGGACACGGGAGCAG
TTCCATTCGCCTCCTTGCATGCACCGGCGGCGGCGGCAGCCATTGAGCCA
AACATGGCAACGCACAATAGAGCACTGATTAAGATTTTAGCCATGTCGAC
TGATAACT

BO07002.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11142-PA 729 CG11142-RA 1..726 744..19 3630 100 Minus
CG11142-PB 750 CG11142-RB 1..57 744..688 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 994 CG11142-RA 128..853 744..19 3630 100 Minus
obst-E-RB 998 CG11142-RB 128..184 744..688 285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763601..5764272 19..690 3360 100 Plus
2L 23513712 2L 5765961..5766015 690..744 275 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:07:21 has no hits.

BO07002.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:11 Download gff for BO07002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 15..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:18 Download gff for BO07002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 15..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:35 Download gff for BO07002.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..857 14..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:04 Download gff for BO07002.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..857 14..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:04 Download gff for BO07002.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5763598..5764271 14..689 99 <- Plus
2L 5765961..5766015 690..744 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:35 Download gff for BO07002.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763598..5764271 14..689 99 <- Plus
arm_2L 5765961..5766015 690..744 100   Plus

BO07002.5prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO07002.5prime
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACGCAAGCTT
TCTAGACC

BO07002.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11142-PA 729 CG11142-RA 1..726 17..742 3630 100 Plus
CG11142-PB 750 CG11142-RB 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 994 CG11142-RA 128..853 17..742 3630 100 Plus
obst-E-RB 998 CG11142-RB 128..184 17..73 285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763601..5764272 742..71 3360 100 Minus
2L 23513712 2L 5765961..5766015 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:55:34 has no hits.

BO07002.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:11 Download gff for BO07002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 17..746 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:19 Download gff for BO07002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:35 Download gff for BO07002.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..857 17..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:02 Download gff for BO07002.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..857 17..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:02 Download gff for BO07002.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5763598..5764271 72..747 99 <- Minus
2L 5765961..5766015 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:35 Download gff for BO07002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763598..5764271 72..747 99 <- Minus
arm_2L 5765961..5766015 17..71 100   Minus

BO07002.complete Sequence

760 bp (760 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630622

> BO07002.complete
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACGCAAGCTT
TCTAGACCAT

BO07002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 729 CG11142-PA 1..726 17..742 3630 100 Plus
obst-E-RB 750 CG11142-PB 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 994 CG11142-RA 128..853 17..742 3630 100 Plus
obst-E-RB 998 CG11142-RB 128..184 17..73 285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763601..5764272 742..71 3360 100 Minus
2L 23513712 2L 5765961..5766015 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:46:43 has no hits.

BO07002.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:51 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:28 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 127..856 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:26 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..853 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:52 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 127..856 17..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:41 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..853 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:41 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5763599..5764271 72..744 99 <- Minus
2L 5765961..5766015 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:26 Download gff for BO07002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763599..5764271 72..744 99 <- Minus
arm_2L 5765961..5766015 17..71 100   Minus

BO07002.pep Sequence

Translation from 16 to 760

> BO07002.pep
MAKILISALLCVAMFGSMAAAAAGACKEANGTAPVSGSCDAYIECKNGVA
EEKLCPDGLLYNEKSTGYPCGYPIDVECTQGQARLQAAQPTDECPHQFGY
YRMGDASHCGQFMNCAAGRGFVFDCPEGLAWNPATYKCDWPDQVEDCDAE
AFLGFRCPAPAPRSELLGEQEADYTFHPSQDNCQVYFICIEGRPRRIGCG
EDQAFNQELNQCDDIENVPNCSSAIREKGAQIKAARLHARKNASFLDH

BO07002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-PA 242 CG11142-PA 1..242 1..242 1342 100 Plus
obst-E-PB 249 CG11142-PB 1..232 1..228 564 48.9 Plus
obst-B-PA 337 CG4778-PA 86..285 26..228 339 34.3 Plus
obst-A-PB 237 CG17052-PB 8..225 6..221 317 32.3 Plus
obst-A-PA 237 CG17052-PA 8..225 6..221 317 32.3 Plus