Clone Sequence Records
BO07002.3prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO07002.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCCTGGCGTGAAGACGAGCAGCCTTGA
TTTGGGCACCCTTTTCACGGATGGCACTGCTGCAGTTGGGCACGTTCTCG
ATGTCGTCGCACTGGTTCAGCTCCTGGTTGAAAGCCTGGTCCTCGCCGCA
GCCAATGCGACGCGGACGTCCCTCGATACAGATGAAGTACACCTGGCAAT
TGTCCTGCGACGGGTGGAAGGTGTAGTCAGCCTCCTGCTCGCCGAGCAGC
TCAGATCTGGGTGCCGGCGCTGGGCAGCGGAAGCCCAGGAAGGCCTCGGC
GTCACAGTCCTCCACCTGATCGGGCCAATCGCACTTGTAGGTGGCCGGAT
TCCAGGCCAGACCCTCGGGGCAGTCGAACACGAAGCCACGGCCCGCGGCG
CAGTTCATGAACTGTCCACAATGGCTGGCATCACCCATGCGATAGTATCC
GAACTGGTGGGGGCACTCATCCGTTGGCTGAGCGGCCTGCAGGCGGGCCT
GGCCCTGGGTGCACTCCACGTCGATCGGATAGCCGCAGGGGTAACCCGTG
GACTTTTCGTTGTACAGCAGACCGTCGGGGCAGAGCTTCTCCTCGGCCAC
TCCGTTCTTGCACTCAATGTAGGCATCGCAGGATCCGGACACGGGAGCAG
TTCCATTCGCCTCCTTGCATGCACCGGCGGCGGCGGCAGCCATTGAGCCA
AACATGGCAACGCACAATAGAGCACTGATTAAGATTTTAGCCATGTCGAC
TGATAACT
BO07002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11142-PA | 729 | CG11142-RA | 1..726 | 744..19 | 3630 | 100 | Minus |
CG11142-PB | 750 | CG11142-RB | 1..57 | 744..688 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 994 | CG11142-RA | 128..853 | 744..19 | 3630 | 100 | Minus |
obst-E-RB | 998 | CG11142-RB | 128..184 | 744..688 | 285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5763601..5764272 | 19..690 | 3360 | 100 | Plus |
2L | 23513712 | 2L | 5765961..5766015 | 690..744 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:07:21 has no hits.
BO07002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:11 Download gff for
BO07002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:18 Download gff for
BO07002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:35 Download gff for
BO07002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..857 | 14..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:04 Download gff for
BO07002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..857 | 14..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:04 Download gff for
BO07002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5763598..5764271 | 14..689 | 99 | <- | Plus |
2L | 5765961..5766015 | 690..744 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:35 Download gff for
BO07002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5763598..5764271 | 14..689 | 99 | <- | Plus |
arm_2L | 5765961..5766015 | 690..744 | 100 | | Plus |
BO07002.5prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO07002.5prime
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACGCAAGCTT
TCTAGACC
BO07002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11142-PA | 729 | CG11142-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
CG11142-PB | 750 | CG11142-RB | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 994 | CG11142-RA | 128..853 | 17..742 | 3630 | 100 | Plus |
obst-E-RB | 998 | CG11142-RB | 128..184 | 17..73 | 285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5763601..5764272 | 742..71 | 3360 | 100 | Minus |
2L | 23513712 | 2L | 5765961..5766015 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:55:34 has no hits.
BO07002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:11 Download gff for
BO07002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:19 Download gff for
BO07002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:35 Download gff for
BO07002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..857 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:02 Download gff for
BO07002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..857 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:02 Download gff for
BO07002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5763598..5764271 | 72..747 | 99 | <- | Minus |
2L | 5765961..5766015 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:35 Download gff for
BO07002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5763598..5764271 | 72..747 | 99 | <- | Minus |
arm_2L | 5765961..5766015 | 17..71 | 100 | | Minus |
BO07002.complete Sequence
760 bp (760 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630622
> BO07002.complete
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACGCAAGCTT
TCTAGACCAT
BO07002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 729 | CG11142-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
obst-E-RB | 750 | CG11142-PB | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 994 | CG11142-RA | 128..853 | 17..742 | 3630 | 100 | Plus |
obst-E-RB | 998 | CG11142-RB | 128..184 | 17..73 | 285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5763601..5764272 | 742..71 | 3360 | 100 | Minus |
2L | 23513712 | 2L | 5765961..5766015 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:46:43 has no hits.
BO07002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:51 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:28 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 127..856 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:26 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..853 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:52 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 127..856 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:41 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..853 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:41 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5763599..5764271 | 72..744 | 99 | <- | Minus |
2L | 5765961..5766015 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:26 Download gff for
BO07002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5763599..5764271 | 72..744 | 99 | <- | Minus |
arm_2L | 5765961..5766015 | 17..71 | 100 | | Minus |
BO07002.pep Sequence
Translation from 16 to 760
> BO07002.pep
MAKILISALLCVAMFGSMAAAAAGACKEANGTAPVSGSCDAYIECKNGVA
EEKLCPDGLLYNEKSTGYPCGYPIDVECTQGQARLQAAQPTDECPHQFGY
YRMGDASHCGQFMNCAAGRGFVFDCPEGLAWNPATYKCDWPDQVEDCDAE
AFLGFRCPAPAPRSELLGEQEADYTFHPSQDNCQVYFICIEGRPRRIGCG
EDQAFNQELNQCDDIENVPNCSSAIREKGAQIKAARLHARKNASFLDH
BO07002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-PA | 242 | CG11142-PA | 1..242 | 1..242 | 1342 | 100 | Plus |
obst-E-PB | 249 | CG11142-PB | 1..232 | 1..228 | 564 | 48.9 | Plus |
obst-B-PA | 337 | CG4778-PA | 86..285 | 26..228 | 339 | 34.3 | Plus |
obst-A-PB | 237 | CG17052-PB | 8..225 | 6..221 | 317 | 32.3 | Plus |
obst-A-PA | 237 | CG17052-PA | 8..225 | 6..221 | 317 | 32.3 | Plus |