Clone BO07003 Report

Search the DGRC for BO07003

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG3301-RA
Protein status:BO07003.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO07003.3prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-03

> BO07003.3prime
ATGGTCTAGAAAGCTTGCAAAGCCCTCACCAACCGGCTTGATTATGAGCT
CCTTTATCTGGACAGTTGGGGGCGTCTGGATGCAGTAGGTCACCGCATCG
GCTATATCCTCCGATCGCAGCATGGGCATGCCTGTGGGTTGCTCCCAGGA
TCCGGCTTCGAAAATTTCAGTGGCCACTACACCAGGACTGATGCTCGTGA
TCTTTGTTTGAGTGCCCTTCTTGATGAACTCCTGACGCAGGATTTCGGTC
AAGGCGGTGATCGCGTGTTTGGAGGGCGCGTACATGTTCAGGCTGAAGCC
CTCCACGGCCGGAACGGAGTGGCCTACCACACTATTGATGACTACCACAT
GACCGTCGTTTACCTTGCGGCGCTGCAGCGATAGGAACCACTGGCGGGTG
CACCAGGTCACTCCCAACACATTCACGTCCAGAATGGCACGCACATCAGC
GGAATTTTCCGGGTCCGTGATGTTCATTTGACGTATGATCCCGGCGTTAT
TGACAAGCACGTCGGCACCACCCAGGGTGCGATCGATCCAGGCGAAGGTA
TCGATGACCTGCTGTTCATTGCTGACATCACAGGGGCGGGTGTGGAAGCG
AGCAGCCTGATCGGCGGGCAGGGAGGATTTGATGTCCTGGAGGACCTTCT
CTCTCCTGGCCAGGCCCACCACTACCATTCCCTTGGCCACCAGATCGCGG
CAGCAGGCTGCTCCGATTCCGGCGCTGGCACCAGTGACTACGGCAACGCG
ATTCAACCAGCGGTTCATGTCGACTGATAACT

BO07003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PA 753 CG3301-RA 1..750 768..19 3750 100 Minus
CG3301-PB 753 CG3301-RB 1..750 768..19 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 814 CG3301-RC 38..788 769..19 3755 100 Minus
CG3301-RB 1101 CG3301-RB 38..788 769..19 3755 100 Minus
CG3301-RA 1006 CG3301-RA 38..788 769..19 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276212 196..769 2870 100 Plus
3R 32079331 3R 21275404..21275581 19..196 890 100 Plus
X 23542271 X 11764207..11764466 494..753 265 73.5 Plus
3R 32079331 3R 5849343..5849434 126..35 190 80.4 Minus
Blast to na_te.dros performed on 2015-02-11 16:55:48 has no hits.

BO07003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:12 Download gff for BO07003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 16..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:21 Download gff for BO07003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 16..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:37 Download gff for BO07003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..793 14..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:29 Download gff for BO07003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..793 14..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:29 Download gff for BO07003.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21275399..21275580 14..195 98 <- Plus
3R 21275639..21276212 196..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:37 Download gff for BO07003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17101121..17101302 14..195 98 <- Plus
arm_3R 17101361..17101934 196..769 100   Plus

BO07003.5prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-03

> BO07003.5prime
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTGCAAGCTTTCTAGACC

BO07003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PA 753 CG3301-RA 1..750 17..766 3750 100 Plus
CG3301-PB 753 CG3301-RB 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 814 CG3301-RC 38..788 16..766 3755 100 Plus
CG3301-RB 1101 CG3301-RB 38..788 16..766 3755 100 Plus
CG3301-RA 1006 CG3301-RA 38..788 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276212 589..16 2870 100 Minus
3R 32079331 3R 21275404..21275581 766..589 890 100 Minus
X 23542271 X 11764207..11764466 291..32 265 73.5 Minus
3R 32079331 3R 5849343..5849434 659..750 190 80.4 Plus
Blast to na_te.dros performed on 2015-02-13 05:24:29 has no hits.

BO07003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:14 Download gff for BO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 17..769 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:23 Download gff for BO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:02 Download gff for BO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..793 16..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:50 Download gff for BO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..793 16..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:50 Download gff for BO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21275399..21275580 590..771 98 <- Minus
3R 21275639..21276212 16..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:02 Download gff for BO07003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17101121..17101302 590..771 98 <- Minus
arm_3R 17101361..17101934 16..589 100   Minus

BO07003.complete Sequence

784 bp (784 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630623

> BO07003.complete
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTGCAAGCTTTCTAGACCAT

BO07003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 753 CG3301-PC 1..750 17..766 3750 100 Plus
CG3301-RB 753 CG3301-PB 1..750 17..766 3750 100 Plus
CG3301-RA 753 CG3301-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 814 CG3301-RC 38..788 16..766 3755 100 Plus
CG3301-RB 1101 CG3301-RB 38..788 16..766 3755 100 Plus
CG3301-RA 1006 CG3301-RA 38..788 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276212 589..16 2870 100 Minus
3R 32079331 3R 21275404..21275581 766..589 890 100 Minus
X 23542271 X 11764207..11764466 291..32 265 73.5 Minus
3R 32079331 3R 5849343..5849434 659..750 190 80.4 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:37 has no hits.

BO07003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:53 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:30 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 40..795 16..771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:15 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 39..788 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:53 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 40..795 16..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:59 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 39..788 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:59 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21275639..21276211 17..589 100   Minus
3R 21275401..21275580 590..768 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:15 Download gff for BO07003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17101361..17101933 17..589 100   Minus
arm_3R 17101123..17101302 590..768 98 <- Minus

BO07003.pep Sequence

Translation from 16 to 784

> BO07003.pep
MNRWLNRVAVVTGASAGIGAACCRDLVAKGMVVVGLARREKVLQDIKSSL
PADQAARFHTRPCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGIIRQMNI
TDPENSADVRAILDVNVLGVTWCTRQWFLSLQRRKVNDGHVVVINSVVGH
SVPAVEGFSLNMYAPSKHAITALTEILRQEFIKKGTQTKITSISPGVVAT
EIFEAGSWEQPTGMPMLRSEDIADAVTYCIQTPPTVQIKELIIKPVGEGF
ASFLDH

BO07003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PC 250 CG3301-PC 1..250 1..250 1285 100 Plus
CG3301-PB 250 CG3301-PB 1..250 1..250 1285 100 Plus
CG3301-PA 250 CG3301-PA 1..250 1..250 1285 100 Plus
CG9360-PA 251 CG9360-PA 1..249 1..248 888 69.5 Plus
CG9150-PB 251 CG9150-PB 1..251 1..250 595 48.4 Plus