Clone Sequence Records
BO07003.3prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-03
> BO07003.3prime
ATGGTCTAGAAAGCTTGCAAAGCCCTCACCAACCGGCTTGATTATGAGCT
CCTTTATCTGGACAGTTGGGGGCGTCTGGATGCAGTAGGTCACCGCATCG
GCTATATCCTCCGATCGCAGCATGGGCATGCCTGTGGGTTGCTCCCAGGA
TCCGGCTTCGAAAATTTCAGTGGCCACTACACCAGGACTGATGCTCGTGA
TCTTTGTTTGAGTGCCCTTCTTGATGAACTCCTGACGCAGGATTTCGGTC
AAGGCGGTGATCGCGTGTTTGGAGGGCGCGTACATGTTCAGGCTGAAGCC
CTCCACGGCCGGAACGGAGTGGCCTACCACACTATTGATGACTACCACAT
GACCGTCGTTTACCTTGCGGCGCTGCAGCGATAGGAACCACTGGCGGGTG
CACCAGGTCACTCCCAACACATTCACGTCCAGAATGGCACGCACATCAGC
GGAATTTTCCGGGTCCGTGATGTTCATTTGACGTATGATCCCGGCGTTAT
TGACAAGCACGTCGGCACCACCCAGGGTGCGATCGATCCAGGCGAAGGTA
TCGATGACCTGCTGTTCATTGCTGACATCACAGGGGCGGGTGTGGAAGCG
AGCAGCCTGATCGGCGGGCAGGGAGGATTTGATGTCCTGGAGGACCTTCT
CTCTCCTGGCCAGGCCCACCACTACCATTCCCTTGGCCACCAGATCGCGG
CAGCAGGCTGCTCCGATTCCGGCGCTGGCACCAGTGACTACGGCAACGCG
ATTCAACCAGCGGTTCATGTCGACTGATAACT
BO07003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-PA | 753 | CG3301-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
CG3301-PB | 753 | CG3301-RB | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 814 | CG3301-RC | 38..788 | 769..19 | 3755 | 100 | Minus |
CG3301-RB | 1101 | CG3301-RB | 38..788 | 769..19 | 3755 | 100 | Minus |
CG3301-RA | 1006 | CG3301-RA | 38..788 | 769..19 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21275639..21276212 | 196..769 | 2870 | 100 | Plus |
3R | 32079331 | 3R | 21275404..21275581 | 19..196 | 890 | 100 | Plus |
X | 23542271 | X | 11764207..11764466 | 494..753 | 265 | 73.5 | Plus |
3R | 32079331 | 3R | 5849343..5849434 | 126..35 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:55:48 has no hits.
BO07003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:12 Download gff for
BO07003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 16..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:21 Download gff for
BO07003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 16..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:37 Download gff for
BO07003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..793 | 14..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:29 Download gff for
BO07003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..793 | 14..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:29 Download gff for
BO07003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21275399..21275580 | 14..195 | 98 | <- | Plus |
3R | 21275639..21276212 | 196..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:37 Download gff for
BO07003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17101121..17101302 | 14..195 | 98 | <- | Plus |
arm_3R | 17101361..17101934 | 196..769 | 100 | | Plus |
BO07003.5prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-03
> BO07003.5prime
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTGCAAGCTTTCTAGACC
BO07003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-PA | 753 | CG3301-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG3301-PB | 753 | CG3301-RB | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 814 | CG3301-RC | 38..788 | 16..766 | 3755 | 100 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..788 | 16..766 | 3755 | 100 | Plus |
CG3301-RA | 1006 | CG3301-RA | 38..788 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21275639..21276212 | 589..16 | 2870 | 100 | Minus |
3R | 32079331 | 3R | 21275404..21275581 | 766..589 | 890 | 100 | Minus |
X | 23542271 | X | 11764207..11764466 | 291..32 | 265 | 73.5 | Minus |
3R | 32079331 | 3R | 5849343..5849434 | 659..750 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:24:29 has no hits.
BO07003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:14 Download gff for
BO07003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:23 Download gff for
BO07003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:02 Download gff for
BO07003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..793 | 16..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:50 Download gff for
BO07003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..793 | 16..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:50 Download gff for
BO07003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21275399..21275580 | 590..771 | 98 | <- | Minus |
3R | 21275639..21276212 | 16..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:02 Download gff for
BO07003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17101121..17101302 | 590..771 | 98 | <- | Minus |
arm_3R | 17101361..17101934 | 16..589 | 100 | | Minus |
BO07003.complete Sequence
784 bp (784 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630623
> BO07003.complete
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTGCAAGCTTTCTAGACCAT
BO07003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 753 | CG3301-PC | 1..750 | 17..766 | 3750 | 100 | Plus |
CG3301-RB | 753 | CG3301-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG3301-RA | 753 | CG3301-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 814 | CG3301-RC | 38..788 | 16..766 | 3755 | 100 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..788 | 16..766 | 3755 | 100 | Plus |
CG3301-RA | 1006 | CG3301-RA | 38..788 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21275639..21276212 | 589..16 | 2870 | 100 | Minus |
3R | 32079331 | 3R | 21275404..21275581 | 766..589 | 890 | 100 | Minus |
X | 23542271 | X | 11764207..11764466 | 291..32 | 265 | 73.5 | Minus |
3R | 32079331 | 3R | 5849343..5849434 | 659..750 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:37 has no hits.
BO07003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:53 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:30 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RB | 40..795 | 16..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:15 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 39..788 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:53 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RB | 40..795 | 16..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:59 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 39..788 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:59 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21275639..21276211 | 17..589 | 100 | | Minus |
3R | 21275401..21275580 | 590..768 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:15 Download gff for
BO07003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17101361..17101933 | 17..589 | 100 | | Minus |
arm_3R | 17101123..17101302 | 590..768 | 98 | <- | Minus |
BO07003.pep Sequence
Translation from 16 to 784
> BO07003.pep
MNRWLNRVAVVTGASAGIGAACCRDLVAKGMVVVGLARREKVLQDIKSSL
PADQAARFHTRPCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGIIRQMNI
TDPENSADVRAILDVNVLGVTWCTRQWFLSLQRRKVNDGHVVVINSVVGH
SVPAVEGFSLNMYAPSKHAITALTEILRQEFIKKGTQTKITSISPGVVAT
EIFEAGSWEQPTGMPMLRSEDIADAVTYCIQTPPTVQIKELIIKPVGEGF
ASFLDH
BO07003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-PC | 250 | CG3301-PC | 1..250 | 1..250 | 1285 | 100 | Plus |
CG3301-PB | 250 | CG3301-PB | 1..250 | 1..250 | 1285 | 100 | Plus |
CG3301-PA | 250 | CG3301-PA | 1..250 | 1..250 | 1285 | 100 | Plus |
CG9360-PA | 251 | CG9360-PA | 1..249 | 1..248 | 888 | 69.5 | Plus |
CG9150-PB | 251 | CG9150-PB | 1..251 | 1..250 | 595 | 48.4 | Plus |