Clone Sequence Records
BO07004.3prime Sequence
686 bp (685 high quality bases) assembled on 2005-12-03
> BO07004.3prime
ATGGTCTAGAAAGCTTGCGTTGCCACCTTTCCGCAGTCTTCGCTGCTCGT
ACTCGTAGCTAAGTCGCCGCCAAATGCCCAGACACATCCGCATCAGGCGC
ACATCCTTCTCGATGTTTCTACTCGCAAACTTATACTGCTGTCGGATCAA
ATGCTTCGCCATCCGTAGTTGACCACGCTGGATTAGCGAAATGCTGTAGT
AGAGCTTGCAGCGCGTCTGCAGGAAGGGATCACCGAGTCGCATGCCAATC
TTTAACTGCTGCAGCGAAATCTTGCCAGCCGTTTTCGCACATCGCTCGAA
CTGCTCGCCAAGGGCGGAGAATCCGCCGCCCAGTGTGGACAGCCAGGACA
TGAGGTGCTCCACCTCGATGCGCTCCCACAGCGTGTGTGCCAGCATGTCG
GCGAATTTGTAGTCAATGGTGTGCTTCTCCGGTTCCTCGAATTGCAGCCA
GACCAGCTGGACACCATGATTGTGCATAAGGCTCTGGGCAAGCACGTGCT
GGTGCAGGAACTCGCGAAGATAGTAATTACCATTGATGGCGTCCACATCG
ATGCACAGCCTCCGCAGCGGTTTGGCTTCTGGCCAGGCGTCGCCGGCTTC
ACGATTTTGACGATTGTGGTAATGACATCGCCGCCAGTAGTCGGAAACGC
AAATGATCAGCGAATCCGACATGTCGACTGATAACT
BO07004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-PA | 657 | CG12123-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 1044 | CG12123-RA | 224..877 | 672..19 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8441741..8442125 | 288..672 | 1925 | 100 | Plus |
X | 23542271 | X | 8441414..8441683 | 19..288 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:24:18 has no hits.
BO07004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:15 Download gff for
BO07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:24 Download gff for
BO07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 15..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:29 Download gff for
BO07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 11..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:08 Download gff for
BO07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 11..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:08 Download gff for
BO07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8441408..8441683 | 11..288 | 98 | <- | Plus |
X | 8441742..8442127 | 289..676 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:29 Download gff for
BO07004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8335441..8335716 | 11..288 | 98 | <- | Plus |
arm_X | 8335775..8336160 | 289..676 | 99 | | Plus |
BO07004.5prime Sequence
686 bp (685 high quality bases) assembled on 2005-12-03
> BO07004.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACGCAAGCTTTCTAGACC
BO07004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-PA | 657 | CG12123-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 1044 | CG12123-RA | 224..877 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8441741..8442125 | 401..17 | 1925 | 100 | Minus |
X | 23542271 | X | 8441414..8441683 | 670..401 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:02:20 has no hits.
BO07004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:15 Download gff for
BO07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:25 Download gff for
BO07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:18 Download gff for
BO07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 13..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:08 Download gff for
BO07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 13..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:08 Download gff for
BO07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8441408..8441683 | 401..678 | 98 | <- | Minus |
X | 8441742..8442127 | 13..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:18 Download gff for
BO07004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8335441..8335716 | 401..678 | 98 | <- | Minus |
arm_X | 8335775..8336160 | 13..400 | 99 | | Minus |
BO07004.complete Sequence
688 bp (688 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630624
> BO07004.complete
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACGCAAGCTTTCTAGACCAT
BO07004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 657 | CG12123-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 1044 | CG12123-RA | 224..877 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8441741..8442125 | 401..17 | 1925 | 100 | Minus |
X | 23542271 | X | 8441414..8441683 | 670..401 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:32 has no hits.
BO07004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:54 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:31 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 215..876 | 13..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:40 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 224..877 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:54 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 215..876 | 13..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:07 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 224..877 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:07 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8441412..8441683 | 401..672 | 99 | <- | Minus |
X | 8441742..8442125 | 17..400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:40 Download gff for
BO07004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8335445..8335716 | 401..672 | 99 | <- | Minus |
arm_X | 8335775..8336158 | 17..400 | 100 | | Minus |
BO07004.pep Sequence
Translation from 16 to 688
> BO07004.pep
MSDSLIICVSDYWRRCHYHNRQNREAGDAWPEAKPLRRLCIDVDAINGNY
YLREFLHQHVLAQSLMHNHGVQLVWLQFEEPEKHTIDYKFADMLAHTLWE
RIEVEHLMSWLSTLGGGFSALGEQFERCAKTAGKISLQQLKIGMRLGDPF
LQTRCKLYYSISLIQRGQLRMAKHLIRQQYKFASRNIEKDVRLMRMCLGI
WRRLSYEYEQRRLRKGGNASFLDH
BO07004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-PA | 218 | CG12123-PA | 1..218 | 1..218 | 1174 | 100 | Plus |