Clone BO07004 Report

Search the DGRC for BO07004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG12123-RA
Protein status:BO07004.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO07004.3prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-03

> BO07004.3prime
ATGGTCTAGAAAGCTTGCGTTGCCACCTTTCCGCAGTCTTCGCTGCTCGT
ACTCGTAGCTAAGTCGCCGCCAAATGCCCAGACACATCCGCATCAGGCGC
ACATCCTTCTCGATGTTTCTACTCGCAAACTTATACTGCTGTCGGATCAA
ATGCTTCGCCATCCGTAGTTGACCACGCTGGATTAGCGAAATGCTGTAGT
AGAGCTTGCAGCGCGTCTGCAGGAAGGGATCACCGAGTCGCATGCCAATC
TTTAACTGCTGCAGCGAAATCTTGCCAGCCGTTTTCGCACATCGCTCGAA
CTGCTCGCCAAGGGCGGAGAATCCGCCGCCCAGTGTGGACAGCCAGGACA
TGAGGTGCTCCACCTCGATGCGCTCCCACAGCGTGTGTGCCAGCATGTCG
GCGAATTTGTAGTCAATGGTGTGCTTCTCCGGTTCCTCGAATTGCAGCCA
GACCAGCTGGACACCATGATTGTGCATAAGGCTCTGGGCAAGCACGTGCT
GGTGCAGGAACTCGCGAAGATAGTAATTACCATTGATGGCGTCCACATCG
ATGCACAGCCTCCGCAGCGGTTTGGCTTCTGGCCAGGCGTCGCCGGCTTC
ACGATTTTGACGATTGTGGTAATGACATCGCCGCCAGTAGTCGGAAACGC
AAATGATCAGCGAATCCGACATGTCGACTGATAACT

BO07004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 657 CG12123-RA 1..654 672..19 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1044 CG12123-RA 224..877 672..19 3270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442125 288..672 1925 100 Plus
X 23542271 X 8441414..8441683 19..288 1350 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:24:18 has no hits.

BO07004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:15 Download gff for BO07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:24 Download gff for BO07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 15..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:29 Download gff for BO07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 11..676 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:08 Download gff for BO07004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 11..676 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:08 Download gff for BO07004.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8441408..8441683 11..288 98 <- Plus
X 8441742..8442127 289..676 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:29 Download gff for BO07004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335441..8335716 11..288 98 <- Plus
arm_X 8335775..8336160 289..676 99   Plus

BO07004.5prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-03

> BO07004.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACGCAAGCTTTCTAGACC

BO07004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 657 CG12123-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1044 CG12123-RA 224..877 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442125 401..17 1925 100 Minus
X 23542271 X 8441414..8441683 670..401 1350 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:02:20 has no hits.

BO07004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:15 Download gff for BO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:25 Download gff for BO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:18 Download gff for BO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 13..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:08 Download gff for BO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 13..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:08 Download gff for BO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8441408..8441683 401..678 98 <- Minus
X 8441742..8442127 13..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:18 Download gff for BO07004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335441..8335716 401..678 98 <- Minus
arm_X 8335775..8336160 13..400 99   Minus

BO07004.complete Sequence

688 bp (688 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630624

> BO07004.complete
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACGCAAGCTTTCTAGACCAT

BO07004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 657 CG12123-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1044 CG12123-RA 224..877 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442125 401..17 1925 100 Minus
X 23542271 X 8441414..8441683 670..401 1350 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:59:32 has no hits.

BO07004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:54 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:31 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 215..876 13..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:40 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 224..877 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:54 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 215..876 13..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:07 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 224..877 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:07 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
X 8441412..8441683 401..672 99 <- Minus
X 8441742..8442125 17..400 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:40 Download gff for BO07004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335445..8335716 401..672 99 <- Minus
arm_X 8335775..8336158 17..400 100   Minus

BO07004.pep Sequence

Translation from 16 to 688

> BO07004.pep
MSDSLIICVSDYWRRCHYHNRQNREAGDAWPEAKPLRRLCIDVDAINGNY
YLREFLHQHVLAQSLMHNHGVQLVWLQFEEPEKHTIDYKFADMLAHTLWE
RIEVEHLMSWLSTLGGGFSALGEQFERCAKTAGKISLQQLKIGMRLGDPF
LQTRCKLYYSISLIQRGQLRMAKHLIRQQYKFASRNIEKDVRLMRMCLGI
WRRLSYEYEQRRLRKGGNASFLDH

BO07004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 218 CG12123-PA 1..218 1..218 1174 100 Plus