Clone Sequence Records
BO07009.3prime Sequence
855 bp (757 high quality bases) assembled on 2005-12-03
> BO07009.3prime
ATGGTCTAGAAAGCTTGCTGCCAAATCCTCTTTGAGCATCCTTATCAGAT
CTTTTTGCATGTTGAGAAGCACACGAACGCGCCCCGAGTTGGAATGTGGG
TCAAAATCCGAACCATCCTGCAAATGAAGATCGAAAAAATTCCTATATCT
TTTCAACTCCTCCTCCAAAATGTCCTTGTTATCCGGAATCGGTTCACCAC
GCAGTTCCATTCGAATAAGCTCCATCAAATCGATCATACGTTTTCGAACA
TCTTCGGGTGACTTCTGACTATCGGAATTTTGAAAAGCGTTGGGCTTCTG
GTTACTTCTGGGTGAAAATTTGGGCGGCGAGGATTGGGAACGACTGGTGG
ACGATTGCGTGGCAGAGGGAGAAGAGGAATGGTTTAAACGGAAATTCGCT
TTTTGGTTTTTGTAAAGCTGACGCACTTCGTCATCACTTGTCGTGTGTAC
GGGACGGAGGAGCCGTCGGCTCCTCTGCACTTGTGGTTTTAAAATGGATG
GGACACTTGTCCCGCCGGAAGGACGAGCACAATTCGAGAAGGTGTCCCAG
TACTCAGACGTCGACCGTTTACCGCTGCAGTCACATGACAAAGCGGAGGA
GGGCACTGCGGCTAGAGAAGATTGATTCAGATCACAGGAACGCTGCATTT
CAGTCAGGTTTGGGCATTGCTGATCCTCTGGCTTCTCCGTGAAGTCGACC
CAAGCCAACTCCGCTGGCGGAGGCTCCTCGAAAACGCCAGTCAGTCGCCG
TTGGTTTAGGGCAACACTGAAGTGACTCATGTACGCGTTGCGCATGCGCA
GATCGTAGAGAGTGTGGCAATGCATGGTGGTCAGTTTGTTGAGCCACAGC
CACGA
BO07009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-PA | 1077 | CG32295-RA | 238..1074 | 855..19 | 4135 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1175 | CG32295-RA | 284..1120 | 855..19 | 4155 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2525854..2526690 | 19..855 | 4155 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:52:56 has no hits.
BO07009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:25 Download gff for
BO07009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 239..1077 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:36 Download gff for
BO07009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 239..1077 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:08 Download gff for
BO07009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 285..1123 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:45 Download gff for
BO07009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 285..1123 | 15..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:45 Download gff for
BO07009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2525851..2526689 | 15..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:08 Download gff for
BO07009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2525851..2526689 | 15..854 | 99 | | Plus |
BO07009.5prime Sequence
852 bp (799 high quality bases) assembled on 2005-12-03
> BO07009.5prime
GAAGTTATCAGTCGACATGCCAGATTCGAAAGTAGTGGCGAGTGATAGAA
GGAAGAGTAATAGCCATGCCAGCCTGCTCCTGACCACATCCTCCACTCAT
GTGCAGCACGCGGATAGCCATCGAGGTAATGCCAGGACACCGGATGAGAA
CGATCAAAATAGCTCGCTGCTCTCCAATGACTTTGTCCTGATGCTAGACT
GCTCGCCAAGTCCACAGGATGTGTTCTGCGAAAATACGCCGGAGTTTAGG
ACTTCGTGGCTGTGGCTCAACAAACTGACCACCATGCATTGCCACACTCT
CTACGATCTGCGCATGCGCAACGCGTACATGAGTCACTTCAGTGTTTGCC
TAAACCAACGGCGACTGACTGGCGTTTTCGAGGAGCCTCCGCCAGCGGAG
TTGGCTTGGGTCGACTTCACGGAGAAGCCAGAGGATCAGCAATGCCCAAA
CCTGACTGAAATGCAGCGTTCCTGTGATCTGAATCAATCTTCTCTAGCCG
CAGTGCCCTCCTCCGCTTTGTCATGTGACTGCAGCGGTAAACGGTCGACG
TCTGAGTACTGGGACACCTTCTCGAATTGTGCTCGTCCTTCCGGCGGGAC
AAGTGTCCCATCCATTTTAAAACCACAAGTGCAGAGGAGCCGACGGCTCC
TCCGTCCCGTACACACGACAAGTGATGACGAAGTGCGTCAGCTTTACAAA
AACCAAAAAGCGAATTTCCGTTTAAACCATTCCTCTTCTCCCTCTGCCAC
GCAATCGTCCACCAGTCGTTCCCAATCCTCGCCGCCCAAATTTTCACCCA
GAAGTAACCAGAAGCCCAACGCTTTTCAAAATCCGATAGTCAAAAGTCAC
CC
BO07009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-PA | 1077 | CG32295-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1175 | CG32295-RA | 47..883 | 17..852 | 4145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2526091..2526927 | 852..17 | 4120 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:51:54 has no hits.
BO07009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:27 Download gff for
BO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 1..837 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:37 Download gff for
BO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 1..837 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:26 Download gff for
BO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..883 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:20 Download gff for
BO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..883 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:20 Download gff for
BO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2526091..2526927 | 17..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:26 Download gff for
BO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2526091..2526927 | 17..852 | 99 | | Minus |
BO07009.complete Sequence
1108 bp (1108 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630625
> BO07009.complete
GAAGTTATCAGTCGACATGCCAGATTCGAAAGTAGTGGCGAGTGATAGAA
GGAAGAGTAATAGCCATGCCAGCCTGCTCCTGACCACATCCTCCACTCAT
GTGCAGCACGCGGATAGCCATCGAGGTAATGCCAGGACACCGGATGAGAA
CGATCAAAATAGCTCGCTGCTCTCCAATGACTTTGTCCTGATGCTAGACT
GCTCGCCAAGTCCACAGGATGTGTTCTGCGAAAATACGCCGGAGTTTAGG
ACTTCGTGGCTGTGGCTCAACAAACTGACCACCATGCATTGCCACACTCT
CTACGATCTGCGCATGCGCAACGCGTACATGAGTCACTTCAGTGTTTGCC
TAAACCAACGGCGACTGACTGGCGTTTTCGAGGAGCCTCCGCCAGCGGAG
TTGGCTTGGGTCGACTTCACGGAGAAGCCAGAGGATCAGCAATGCCCAAA
CCTGACTGAAATGCAGCGTTCCTGTGATCTGAATCAATCTTCTCTAGCCG
CAGTGCCCTCCTCCGCTTTGTCATGTGACTGCAGCGGTAAACGGTCGACG
TCTGAGTACTGGGACACCTTCTCGAATTGTGCTCGTCCTTCCGGCGGGAC
AAGTGTCCCATCCATTTTAAAACCACAAGTGCAGAGGAGCCGACGGCTCC
TCCGTCCCGTACACACGACAAGTGATGACGAAGTGCGTCAGCTTTACAAA
AACCAAAAAGCGAATTTCCGTTTAAACCATTCCTCTTCTCCCTCTGCCAC
GCAATCGTCCACCAGTCGTTCCCAATCCTCGCCGCCCAAATTTTCACCCA
GAAGTAACCAGAAGCCCAACGCTTTTCAAAATTCCGATAGTCAGAAGTCA
CCCGAAGATGTTCGAAAACGTATGATCGATTTGATGGAGCTTATTCGAAT
GGAACTGCGTGGTGAACCGATTCCGGATAACAAGGACATTTTGGAGGAGG
AGTTGAAAAGATATAGGAATTTTTTCGATCTTCATTTGCAGGATGGTTCG
GATTTTGACCCACATTCCAACTCGGGGCGCGTTCGTGTGCTTCTCAACAT
GCAAAAAGATCTGATAAGGATGCTCAAAGAGGATTTGGCAGCAAGCTTTC
TAGACCAT
BO07009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1077 | CG32295-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1175 | CG32295-RA | 47..1120 | 17..1090 | 5370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2525854..2526927 | 1090..17 | 5370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:28:57 has no hits.
BO07009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:55 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 1..1077 | 17..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:33 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 46..1122 | 17..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:10 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..1120 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:55 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 46..1122 | 17..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:13 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..1120 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:13 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2525852..2526927 | 17..1092 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:10 Download gff for
BO07009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2525852..2526927 | 17..1092 | 99 | | Minus |
BO07009.pep Sequence
Translation from 16 to 1108
> BO07009.pep
MPDSKVVASDRRKSNSHASLLLTTSSTHVQHADSHRGNARTPDENDQNSS
LLSNDFVLMLDCSPSPQDVFCENTPEFRTSWLWLNKLTTMHCHTLYDLRM
RNAYMSHFSVCLNQRRLTGVFEEPPPAELAWVDFTEKPEDQQCPNLTEMQ
RSCDLNQSSLAAVPSSALSCDCSGKRSTSEYWDTFSNCARPSGGTSVPSI
LKPQVQRSRRLLRPVHTTSDDEVRQLYKNQKANFRLNHSSSPSATQSSTS
RSQSSPPKFSPRSNQKPNAFQNSDSQKSPEDVRKRMIDLMELIRMELRGE
PIPDNKDILEEELKRYRNFFDLHLQDGSDFDPHSNSGRVRVLLNMQKDLI
RMLKEDLAASFLDH
BO07009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-PA | 358 | CG32295-PA | 1..358 | 1..358 | 1889 | 100 | Plus |
