Clone Sequence Records
BO07013.5prime Sequence
782 bp (761 high quality bases) assembled on 2005-12-03
> BO07013.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAAT
TCCAGACCCTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCG
GACAAGAAAGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCA
AACGGCGGGCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAA
ATTCTATATTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAG
CAGTCTGTGTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCA
GGAGATGCTTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTA
TTTGTCCCGTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATT
CGCCAGGTCACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCAT
CCGCGATGAGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCA
GTTCCGTAGCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAG
GAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT
AGAGGAGATAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTC
GTAATGCTGAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATA
ACTTTCCTGAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCAT
AACCGCACCCAAGAAGGCAAGCTTTCTAGACC
BO07013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-PA | 753 | CG6971-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-RA | 939 | CG6971-RA | 97..846 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11892399..11892776 | 766..389 | 1890 | 100 | Minus |
| 3R | 32079331 | 3R | 11892829..11893201 | 389..17 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:31:00 has no hits.
BO07013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:35 Download gff for
BO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:47 Download gff for
BO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:03 Download gff for
BO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:23 Download gff for
BO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:23 Download gff for
BO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11892395..11892775 | 390..770 | 99 | <- | Minus |
| 3R | 11892829..11893208 | 9..389 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:03 Download gff for
BO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7718117..7718497 | 390..770 | 99 | <- | Minus |
| arm_3R | 7718551..7718930 | 9..389 | 98 | | Minus |
BO07013.3prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-03
> BO07013.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGGTGCGGTTATGCCCTCTAGCTGAG
CCTTCAGCTGAGCGTTGGTCTTCTTCAGGAAAGTTATCTCCTCCGTGAAC
TTCTTTTCTTCAGAGGCCCTCAGCTCAGCATTACGACGCTCTGCCTGTTC
CTGCTTAAGTTTCATATCTGCGATTATCTCCTCTAGTGCCTCTTTGTCTA
GTTCAAGAGTCTTGACCCGATCACGAAGCATTTCCTTTTCCTCATGCGCC
TGCAAAGCCTTGCGCATGCCAAAGGCTACGGAACTGCAGTACAATGTTTC
ATAGGCCTCCATTGACATGGCGATCTCATCGCGGATGCGAAGCAGTAGCA
GGCCACGCTCTGAACAGTTAATGGTGACCTGGCGAATGATCTCGTCAAAA
CATTGTGAGTACAGCTCGCGGCGCACGGGACAAATACCTGTCTCACGAGC
TTGGGTCTGCTGCAGCCTAGTATCAAGCATCTCCTGCAAATTGATCACAT
CCTGGCGTGTTGCTGGAGTACTGGACACAGACTGCTGCCACAACTGGCCA
TCCTCCTCCCAGCAGCGCGGTGGCAATATAGAATTTAGAATTTCCTCAGT
TTCCCTTTTGGTATCTAGCAAAGCGCCCGCCGTTTGGGGCCTTTTCATCT
CTATCTCTGTGAGCGGAGCACCCCCTTTCTTGTCCGGGTGCTTCACCACC
AGCACCGGGTTGTTGTAGCGCACCAGGGTCTGGAATTGACCCACGCTTGT
TATATCCAGCTCCTCCATGTCGACTGATAACT
BO07013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-PA | 753 | CG6971-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-RA | 939 | CG6971-RA | 97..846 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11892399..11892776 | 19..396 | 1890 | 100 | Plus |
| 3R | 32079331 | 3R | 11892829..11893201 | 396..768 | 1865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:15:23 has no hits.
BO07013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:34 Download gff for
BO07013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:46 Download gff for
BO07013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:04 Download gff for
BO07013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 15..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:24:45 Download gff for
BO07013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 15..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:24:45 Download gff for
BO07013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11892395..11892775 | 15..395 | 99 | <- | Plus |
| 3R | 11892829..11893208 | 396..776 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:04 Download gff for
BO07013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7718117..7718497 | 15..395 | 99 | <- | Plus |
| arm_3R | 7718551..7718930 | 396..776 | 98 | | Plus |
BO07013.complete Sequence
784 bp (784 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630626
> BO07013.complete
GAAGTTATCAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAAT
TCCAGACCCTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCG
GACAAGAAAGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCA
AACGGCGGGCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAA
ATTCTATATTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAG
CAGTCTGTGTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCA
GGAGATGCTTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTA
TTTGTCCCGTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATT
CGCCAGGTCACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCAT
CCGCGATGAGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCA
GTTCCGTAGCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAG
GAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT
AGAGGAGATAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTC
GTAATGCTGAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATA
ACTTTCCTGAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCAT
AACCGCACCCAAGAAGGCAAGCTTTCTAGACCAT
BO07013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-RA | 753 | CG6971-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-RA | 939 | CG6971-RA | 97..846 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11892399..11892776 | 766..389 | 1890 | 100 | Minus |
| 3R | 32079331 | 3R | 11892829..11893201 | 389..17 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:53 has no hits.
BO07013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:56 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:36 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:46 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 97..846 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:56 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:56 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 97..846 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:56 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11892397..11892775 | 390..768 | 99 | <- | Minus |
| 3R | 11892829..11893201 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:46 Download gff for
BO07013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7718119..7718497 | 390..768 | 99 | <- | Minus |
| arm_3R | 7718551..7718923 | 17..389 | 100 | | Minus |
BO07013.pep Sequence
Translation from 16 to 784
> BO07013.pep
MEELDITSVGQFQTLVRYNNPVLVVKHPDKKGGAPLTEIEMKRPQTAGAL
LDTKRETEEILNSILPPRCWEEDGQLWQQSVSSTPATRQDVINLQEMLDT
RLQQTQARETGICPVRRELYSQCFDEIIRQVTINCSERGLLLLRIRDEIA
MSMEAYETLYCSSVAFGMRKALQAHEEKEMLRDRVKTLELDKEALEEIIA
DMKLKQEQAERRNAELRASEEKKFTEEITFLKKTNAQLKAQLEGITAPKK
ASFLDH
BO07013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-PA | 250 | CG6971-PA | 1..250 | 1..250 | 1263 | 100 | Plus |
