Clone Sequence Records
BO07015.3prime Sequence
902 bp (765 high quality bases) assembled on 2005-12-03
> BO07015.3prime
ATGGTCTAGAAAGCTTGCTTTATGATTTTGTTTGGTGCTGGTAGCCGTTG
CTTTTGCCACGCTTTTTGGTTTACCCCGAAAAATGTTCGGATCAATGATA
TTGTACGGATGCTCGCAAGCGGGATTCAGTACTCGTCCACGTCGTGGCTC
GTGCTCCTCGAGAAGATGAGGTGCTAGCAAAAGAAACAGCTGCTCTGTCC
AAGAGGGCAGGCCACAGGTGGAGAAGCACAGCTCCCAGTACGGCAGTCCC
AAGTGCGCGATGGCCATCCGAAGGTATTCACTAAAGGTGTCCGCCAAAAA
CTGCCAGCTCAGGGTGCTCAGCTCTAGCAGATAGAACTTGGGATTGTTGG
AACTGGTAGATTCGTACAGCATACACACCTTGGCCACCTCGTTTACGTTG
TTGATCTCAAATATTTTCGATTTGGCCGTTATAATAGGCGTGGCATTGCC
CCACTTGTCTTTTCCGGTGGCAATAGGTGCTGGAAGGGATTGAGAGCTCC
CGGCTGCTCCCACAACATCCGAGTTGCTATTGGGCACAGCCGTCGAATTG
CTGGAGTGGCTCGATGTGGTTTCTATGTTCTCCCGCAAAAGGGTCACTTG
CAGCAAGTGCGGAAAGTGAATGTGACCCACGCGCCTAATATCGTTGGGAG
CATATTGGTAGCTCCAGTTTAAGATAAAGCCATCAGAAGATAGGTAGAAC
TTCTTCATATCTTCCGGGAGGTAGACGCAGTGCCTCTGCTCCCAATTCAC
CAACTGGCAGGCATTCAGAGGTTGTCGTCGCTCCAACGTCACATTACATA
CCCTTGGCACATTGGATAGCGTCCTTATCAGACCGAGGGTCAAATTTTCA
TAAAATGCATCCTCTGGCGAGAGCTTCTTGTTCATCATGTCGACTGATAA
CT
BO07015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-PA | 873 | CG6931-RA | 1..870 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-RA | 1075 | CG6931-RA | 48..917 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11991481..11991842 | 380..19 | 1810 | 100 | Minus |
| 3L | 28110227 | 3L | 11991142..11991417 | 647..372 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 11990917..11991084 | 815..648 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 11990783..11990855 | 888..816 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:24:59 has no hits.
BO07015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:39 Download gff for
BO07015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-PA | 1..873 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:52 Download gff for
BO07015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-PA | 1..873 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:36 Download gff for
BO07015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:13 Download gff for
BO07015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 19..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:13 Download gff for
BO07015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11990783..11990855 | 816..888 | 100 | -> | Minus |
| 3L | 11990917..11991084 | 648..815 | 100 | -> | Minus |
| 3L | 11991142..11991410 | 379..647 | 100 | -> | Minus |
| 3L | 11991483..11991842 | 19..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:36 Download gff for
BO07015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11983883..11983955 | 816..888 | 100 | -> | Minus |
| arm_3L | 11984017..11984184 | 648..815 | 100 | -> | Minus |
| arm_3L | 11984242..11984510 | 379..647 | 100 | -> | Minus |
| arm_3L | 11984583..11984942 | 19..378 | 100 | | Minus |
BO07015.5prime Sequence
898 bp (768 high quality bases) assembled on 2005-12-03
> BO07015.5prime
GAAGTTATCAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCAT
TTTATGAAAATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCA
AGGGTATGTAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCA
GTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGA
AGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAA
TATGCTCCCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTT
GCTGCAAGTGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACT
CCAGCAATTCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCA
GCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAA
GTGGGGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGA
TCAACAACGTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACC
AGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTG
GCAGTTTTTGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGC
ACTTGGGACTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCC
TCTTGGACAGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGA
GCACGAGCCACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGT
ACAATATCATTGATCCGAACATTTTTCGGGGTAAACCAAAAAGCGTGGCA
AAAGCAACGGCTACCAGCACCAAACAAATCATAAAGCAAGCTTTCTAG
BO07015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-PA | 873 | CG6931-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-RA | 1075 | CG6931-RA | 48..917 | 17..885 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11991481..11991834 | 525..878 | 1770 | 100 | Plus |
| 3L | 28110227 | 3L | 11991142..11991417 | 258..533 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 11990917..11991084 | 90..257 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 11990783..11990855 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:25:14 has no hits.
BO07015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:40 Download gff for
BO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-PA | 1..873 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:53 Download gff for
BO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-PA | 1..873 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:38 Download gff for
BO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:14 Download gff for
BO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:14 Download gff for
BO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11990783..11990855 | 17..89 | 100 | -> | Plus |
| 3L | 11990917..11991084 | 90..257 | 100 | -> | Plus |
| 3L | 11991142..11991410 | 258..526 | 100 | -> | Plus |
| 3L | 11991483..11991842 | 527..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:38 Download gff for
BO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11983883..11983955 | 17..89 | 100 | -> | Plus |
| arm_3L | 11984017..11984184 | 90..257 | 100 | -> | Plus |
| arm_3L | 11984242..11984510 | 258..526 | 100 | -> | Plus |
| arm_3L | 11984583..11984942 | 527..885 | 99 | | Plus |
BO07015.complete Sequence
904 bp (904 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630627
> BO07015.complete
GAAGTTATCAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCAT
TTTATGAAAATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCA
AGGGTATGTAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCA
GTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGA
AGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAA
TATGCTCCCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTT
GCTGCAAGTGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACT
CCAGCAATTCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCA
GCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAA
GTGGGGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGA
TCAACAACGTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACC
AGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTG
GCAGTTTTTGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGC
ACTTGGGACTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCC
TCTTGGACAGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGA
GCACGAGCCACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGT
ACAATATCATTGATCCGAACATTTTTCGGGGTAAACCAAAAAGCGTGGCA
AAAGCAACGGCTACCAGCACCAAACAAAATCATAAAGCAAGCTTTCTAGA
CCAT
BO07015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-RA | 873 | CG6931-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-RA | 1075 | CG6931-RA | 48..917 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11991481..11991842 | 525..886 | 1810 | 100 | Plus |
| 3L | 28110227 | 3L | 11991142..11991417 | 258..533 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 11990917..11991084 | 90..257 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 11990783..11990855 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:03:49 has no hits.
BO07015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:57 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:38 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 40..909 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:33 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:58 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 40..909 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:23 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:23 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11990783..11990855 | 17..89 | 100 | -> | Plus |
| 3L | 11990917..11991084 | 90..257 | 100 | -> | Plus |
| 3L | 11991142..11991410 | 258..526 | 100 | -> | Plus |
| 3L | 11991483..11991842 | 527..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:33 Download gff for
BO07015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11983883..11983955 | 17..89 | 100 | -> | Plus |
| arm_3L | 11984017..11984184 | 90..257 | 100 | -> | Plus |
| arm_3L | 11984242..11984510 | 258..526 | 100 | -> | Plus |
| arm_3L | 11984583..11984942 | 527..888 | 99 | | Plus |
BO07015.pep Sequence
Translation from 16 to 904
> BO07015.pep
MMNKKLSPEDAFYENLTLGLIRTLSNVPRVCNVTLERRQPLNACQLVNWE
QRHCVYLPEDMKKFYLSSDGFILNWSYQYAPNDIRRVGHIHFPHLLQVTL
LRENIETTSSHSSNSTAVPNSNSDVVGAAGSSQSLPAPIATGKDKWGNAT
PIITAKSKIFEINNVNEVAKVCMLYESTSSNNPKFYLLELSTLSWQFLAD
TFSEYLRMAIAHLGLPYWELCFSTCGLPSWTEQLFLLLAPHLLEEHEPRR
GRVLNPACEHPYNIIDPNIFRGKPKSVAKATATSTKQNHKASFLDH
BO07015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-PA | 290 | CG6931-PA | 1..290 | 1..290 | 1546 | 100 | Plus |
