Clone Sequence Records
BO07019.3prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-03
> BO07019.3prime
ATGGTCTAGAAAGCTTGCGGCAGACTTGACGCGCAGTGCCAGAGCGCTCA
GATCGGCGATGCACTTGTTGAGAGTCTCCTTCTCCTGCTGGGGAGAGATG
CTGGCCAACACATTGGTGGTGATCCAGTTGACCATGTGCTTCTGGCTAAG
GCGACGCTCGACGTGGCGGCACTCCACCTGGTAGTCGAGACGACGCTTCA
CCTCCGAGTACACATTCATGGCGCGCTCACGGAACGCGGCCTCCAGCTGC
AATGCAATGTTCTCCTTCTTGGCTTCCATCAGCAGCAGGGCACCGTCGGC
GCGCCACTGCTCCTTCTTCTCGGCCTCGATGGCGTCGGAGAGGACCTTCA
GCTCAGCCTCGCGTCCCTCCTTCCACTCAGATTCGATTTTATCGATCTCG
CCATCAGCCCACTTGGCGATGACCGGGCCGAGCTTCTTGACAGCAATGAT
GGCCATGATACCGAGCGACAGACCGCTGTAGTACTCGTGCTCCATGTCGA
CTGATAACT
BO07019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8189-PA | 732 | ATPsyn-b-RA | 252..729 | 496..19 | 2390 | 100 | Minus |
| CG8189-PB | 480 | ATPsyn-b-RB | 1..477 | 495..19 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-b-RA | 918 | CG8189-RA | 321..798 | 496..19 | 2390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9730733..9731104 | 390..19 | 1860 | 100 | Minus |
| 3L | 28110227 | 3L | 9730535..9730640 | 496..391 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:07:43 has no hits.
BO07019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:47 Download gff for
BO07019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8189-PA | 244..732 | 15..505 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:03 Download gff for
BO07019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8189-PA | 244..732 | 15..505 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:42 Download gff for
BO07019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 313..801 | 15..505 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:28 Download gff for
BO07019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 313..801 | 15..505 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:28 Download gff for
BO07019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9730527..9730640 | 391..505 | 96 | -> | Minus |
| 3L | 9730733..9731107 | 15..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:42 Download gff for
BO07019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9723627..9723740 | 391..505 | 96 | -> | Minus |
| arm_3L | 9723833..9724207 | 15..390 | 99 | | Minus |
BO07019.5prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-03
> BO07019.5prime
GAAGTTATCAGTCGACATGGAGCACGAGTACTACAGCGGTCTGTCGCTCG
GTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCAAG
TGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGACG
CGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAAGG
AGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGGAG
AACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAATGT
GTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCACG
TCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCAAT
GTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAGTG
CATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCGCAAGCT
TTCTAGACC
BO07019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8189-PA | 732 | ATPsyn-b-RA | 252..729 | 16..493 | 2390 | 100 | Plus |
| CG8189-PB | 480 | ATPsyn-b-RB | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-b-RA | 918 | CG8189-RA | 321..798 | 16..493 | 2390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9730733..9731104 | 122..493 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 9730535..9730640 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:10:17 has no hits.
BO07019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:48 Download gff for
BO07019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8189-PA | 244..732 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:04 Download gff for
BO07019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8189-PA | 244..732 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:45 Download gff for
BO07019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 313..801 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:21 Download gff for
BO07019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 313..801 | 7..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:21 Download gff for
BO07019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9730527..9730640 | 7..121 | 96 | -> | Plus |
| 3L | 9730733..9731107 | 122..497 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:45 Download gff for
BO07019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9723627..9723740 | 7..121 | 96 | -> | Plus |
| arm_3L | 9723833..9724207 | 122..497 | 99 | | Plus |
BO07019.complete Sequence
511 bp (511 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630628
> BO07019.complete
GAAGTTATCAGTCGACATGGAGCACGAGTACTACAGCGGTCTGTCGCTCG
GTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCAAG
TGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGACG
CGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAAGG
AGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGGAG
AACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAATGT
GTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCACG
TCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCAAT
GTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAGTG
CATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCGCAAGCT
TTCTAGACCAT
BO07019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-b-RA | 732 | CG8189-PA | 252..729 | 16..493 | 2390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-b-RA | 918 | CG8189-RA | 321..798 | 16..493 | 2390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9730733..9731104 | 122..493 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 9730535..9730640 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:53 has no hits.
BO07019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:45 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 244..732 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:19 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RB | 551..1039 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:00 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 322..798 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:45 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RB | 551..1039 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:30 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-b-RA | 322..798 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:30 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9730536..9730640 | 17..121 | 100 | -> | Plus |
| 3L | 9730733..9731104 | 122..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:00 Download gff for
BO07019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9723636..9723740 | 17..121 | 100 | -> | Plus |
| arm_3L | 9723833..9724204 | 122..495 | 99 | | Plus |
BO07019.pep Sequence
Translation from 16 to 511
> BO07019.pep
MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELK
VLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVK
RRLDYQVECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLS
ALALRVKSAASFLDH
BO07019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-b-PA | 243 | CG8189-PA | 85..243 | 1..159 | 799 | 100 | Plus |
| CG17300-PA | 152 | CG17300-PA | 80..133 | 1..53 | 142 | 55.6 | Plus |
