Clone BO07020 Report

Search the DGRC for BO07020

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptFnta-RA
Protein status:BO07020.pep: validated full length
Sequenced Size:1027

Clone Sequence Records

BO07020.3prime Sequence

919 bp (853 high quality bases) assembled on 2005-12-03

> BO07020.3prime
ATGGTCTAGAAAGCTTGCCTTCTGTTCGACCGTGCTTAGCTGGTTCTTCA
GATGGTTGGCCACATACTGCCAGTACTTGCGACGAATCACATCGTGTTTG
GTGGCCATGTCCTCGCACAGACCGTACACCTTGCGGGCGAGTTGATCGCT
ATCGCTGGCCTTTAGTTGGAGCGCCTGCTCCTGGTAGAGATCGATGAGGA
AGGCCAGCAGGTAGGGCGATCGATTGCCAGCCTGGTAGAGCTCCTCCACA
AAGTCCACGACATCCGGGTAGCTGCTCAGCAGGGCATTTCCACTGTCGCC
CTGCCGCATCACGCCCACCAAATAGTTCCAGGCACTCTCGTTGTTTTTGA
TGATGCGAATGCGATTCATCGTGTACGACAGTTCGCGCTGGATCAGCTCC
GGCGTGAATCCAAAATGCTTGATCACAAAGAAGCGCTGGTTCCAGGCCGA
ATTGTTGCGCTGATCCTCGCTAATGAGACGATCCACAAAGCTAAGTTCAT
CGTCATAGAGATTAAAGCTGCGAATGGCCCACTGGCGATGTTGCCAGGCG
TGGTAGTTCTTGGCATCGCCATCGTTGACCAGGGCGTTCTCAGTAAGCTC
CAGCTCGTTGCTGGGATCGTTCAGCATCTCGACGATGACGCGACGGTGGT
GCCAAACCTGGTAGTTTTTCGAGTTCTGGCCAATCACCTCGGTCAGATAG
TCCAGTTCCGCATACAGATCAGCCTTTAGTTCGCGCAGAACGTCGCGTCT
GTATTGCCAGACCGTGTAGTTAGCCGGATTCAGACGCAGTGCGTCCGTGG
TTAGGTCCAAGGCACGTTGGCTCTTCTCCCCCCGCGCAATTATGGCCCTC
ATGTAGTCGAAGACCTCGCGAAACTTTTGACTGTAAGCAATGGACACCAC
CGGATTGGGACCGTCGTCC

BO07020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2976-PA 996 CG2976-RA 93..993 919..19 4505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 1352 CG2976-RB 179..1079 919..19 4505 100 Minus
Fnta-RA 1185 CG2976-RA 179..1079 919..19 4505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4829487..4829984 19..516 2475 99.8 Plus
2L 23513712 2L 4830040..4830400 512..872 1805 100 Plus
2L 23513712 2L 4830469..4830515 873..919 235 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:24:40 has no hits.

BO07020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:49 Download gff for BO07020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 93..996 18..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:06 Download gff for BO07020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 93..996 18..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:08 Download gff for BO07020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 179..1083 13..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:11 Download gff for BO07020.3prime
Subject Subject Range Query Range Percent Splice Strand
Fnta-RA 179..1083 13..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:11 Download gff for BO07020.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4829480..4829979 13..511 99 <- Plus
2L 4830040..4830400 512..872 100 <- Plus
2L 4830469..4830515 873..919 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:08 Download gff for BO07020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4829480..4829979 13..511 99 <- Plus
arm_2L 4830040..4830400 512..872 100 <- Plus
arm_2L 4830469..4830515 873..919 100   Plus

BO07020.5prime Sequence

924 bp (768 high quality bases) assembled on 2005-12-03

> BO07020.5prime
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCAACTAAAGGCCAGCGATAGCGATCAACTCGCCCCGCAGGG
GTACGGTCTGTGCGAGGACATGGC

BO07020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2976-PA 996 CG2976-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 1352 CG2976-RB 87..994 17..924 4480 99.7 Plus
Fnta-RA 1185 CG2976-RA 87..994 17..924 4480 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4829572..4829984 924..512 1990 98.8 Minus
2L 23513712 2L 4830040..4830400 516..156 1805 100 Minus
2L 23513712 2L 4830469..4830607 155..17 695 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:26:54 has no hits.

BO07020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:50 Download gff for BO07020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:07 Download gff for BO07020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:29 Download gff for BO07020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 83..994 13..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:43 Download gff for BO07020.5prime
Subject Subject Range Query Range Percent Splice Strand
Fnta-RA 83..994 13..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:43 Download gff for BO07020.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4829572..4829979 517..924 99 <- Minus
2L 4830040..4830400 156..516 100 <- Minus
2L 4830469..4830609 13..155 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:29 Download gff for BO07020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4829572..4829979 517..924 99 <- Minus
arm_2L 4830040..4830400 156..516 100 <- Minus
arm_2L 4830469..4830609 13..155 98   Minus

BO07020.complete Sequence

1027 bp (1027 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630629

> BO07020.complete
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCAACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGT
GTACGGTCTGTGCGAGGACATGGCCACCAAACACGATGTGATTCGTCGCA
AGTACTGGCAGTATGTGGCCAACCATCTGAAGAACCAGCTAAGCACGGTC
GAACAGAAGGCAAGCTTTCTAGACCAT

BO07020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 996 CG2976-PB 1..993 17..1009 4965 100 Plus
Fnta-RA 996 CG2976-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 1352 CG2976-RB 87..1079 17..1009 4965 100 Plus
Fnta-RA 1185 CG2976-RA 87..1079 17..1009 4965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4829487..4829984 1009..512 2475 99.8 Minus
2L 23513712 2L 4830040..4830400 516..156 1805 100 Minus
2L 23513712 2L 4830469..4830607 155..17 695 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:58:29 has no hits.

BO07020.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:46 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 1..996 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:21 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 60..1060 13..1015 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:18 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 87..1079 17..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:46 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 60..1060 13..1015 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:03 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
Fnta-RA 87..1079 17..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:03 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4830469..4830607 17..155 100   Minus
2L 4829483..4829979 517..1011 99 <- Minus
2L 4830040..4830400 156..516 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:18 Download gff for BO07020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4829483..4829979 517..1011 99 <- Minus
arm_2L 4830040..4830400 156..516 100 <- Minus
arm_2L 4830469..4830607 17..155 100   Minus

BO07020.pep Sequence

Translation from 16 to 1027

> BO07020.pep
MGDSSDEEYLGTDWLAYSERSDWEDVQPLAQDDGPNPVVSIAYSQKFREV
FDYMRAIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLY
AELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNELELTENALVNDGDA
KNYHAWQHRQWAIRSFNLYDDELSFVDRLISEDQRNNSAWNQRFFVIKHF
GFTPELIQRELSYTMNRIRIIKNNESAWNYLVGVMRQGDSGNALLSSYPD
VVDFVEELYQAGNRSPYLLAFLIDLYQEQALQLKASDSDQLARKVYGLCE
DMATKHDVIRRKYWQYVANHLKNQLSTVEQKASFLDH

BO07020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-PB 331 CG2976-PB 1..331 1..331 1745 100 Plus
Fnta-PA 331 CG2976-PA 1..331 1..331 1745 100 Plus