Clone Sequence Records
BO07020.3prime Sequence
919 bp (853 high quality bases) assembled on 2005-12-03
> BO07020.3prime
ATGGTCTAGAAAGCTTGCCTTCTGTTCGACCGTGCTTAGCTGGTTCTTCA
GATGGTTGGCCACATACTGCCAGTACTTGCGACGAATCACATCGTGTTTG
GTGGCCATGTCCTCGCACAGACCGTACACCTTGCGGGCGAGTTGATCGCT
ATCGCTGGCCTTTAGTTGGAGCGCCTGCTCCTGGTAGAGATCGATGAGGA
AGGCCAGCAGGTAGGGCGATCGATTGCCAGCCTGGTAGAGCTCCTCCACA
AAGTCCACGACATCCGGGTAGCTGCTCAGCAGGGCATTTCCACTGTCGCC
CTGCCGCATCACGCCCACCAAATAGTTCCAGGCACTCTCGTTGTTTTTGA
TGATGCGAATGCGATTCATCGTGTACGACAGTTCGCGCTGGATCAGCTCC
GGCGTGAATCCAAAATGCTTGATCACAAAGAAGCGCTGGTTCCAGGCCGA
ATTGTTGCGCTGATCCTCGCTAATGAGACGATCCACAAAGCTAAGTTCAT
CGTCATAGAGATTAAAGCTGCGAATGGCCCACTGGCGATGTTGCCAGGCG
TGGTAGTTCTTGGCATCGCCATCGTTGACCAGGGCGTTCTCAGTAAGCTC
CAGCTCGTTGCTGGGATCGTTCAGCATCTCGACGATGACGCGACGGTGGT
GCCAAACCTGGTAGTTTTTCGAGTTCTGGCCAATCACCTCGGTCAGATAG
TCCAGTTCCGCATACAGATCAGCCTTTAGTTCGCGCAGAACGTCGCGTCT
GTATTGCCAGACCGTGTAGTTAGCCGGATTCAGACGCAGTGCGTCCGTGG
TTAGGTCCAAGGCACGTTGGCTCTTCTCCCCCCGCGCAATTATGGCCCTC
ATGTAGTCGAAGACCTCGCGAAACTTTTGACTGTAAGCAATGGACACCAC
CGGATTGGGACCGTCGTCC
BO07020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2976-PA | 996 | CG2976-RA | 93..993 | 919..19 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 1352 | CG2976-RB | 179..1079 | 919..19 | 4505 | 100 | Minus |
Fnta-RA | 1185 | CG2976-RA | 179..1079 | 919..19 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4829487..4829984 | 19..516 | 2475 | 99.8 | Plus |
2L | 23513712 | 2L | 4830040..4830400 | 512..872 | 1805 | 100 | Plus |
2L | 23513712 | 2L | 4830469..4830515 | 873..919 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:24:40 has no hits.
BO07020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:49 Download gff for
BO07020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 93..996 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:06 Download gff for
BO07020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 93..996 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:08 Download gff for
BO07020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 179..1083 | 13..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:11 Download gff for
BO07020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fnta-RA | 179..1083 | 13..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:11 Download gff for
BO07020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4829480..4829979 | 13..511 | 99 | <- | Plus |
2L | 4830040..4830400 | 512..872 | 100 | <- | Plus |
2L | 4830469..4830515 | 873..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:08 Download gff for
BO07020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4829480..4829979 | 13..511 | 99 | <- | Plus |
arm_2L | 4830040..4830400 | 512..872 | 100 | <- | Plus |
arm_2L | 4830469..4830515 | 873..919 | 100 | | Plus |
BO07020.5prime Sequence
924 bp (768 high quality bases) assembled on 2005-12-03
> BO07020.5prime
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCAACTAAAGGCCAGCGATAGCGATCAACTCGCCCCGCAGGG
GTACGGTCTGTGCGAGGACATGGC
BO07020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2976-PA | 996 | CG2976-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 1352 | CG2976-RB | 87..994 | 17..924 | 4480 | 99.7 | Plus |
Fnta-RA | 1185 | CG2976-RA | 87..994 | 17..924 | 4480 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4829572..4829984 | 924..512 | 1990 | 98.8 | Minus |
2L | 23513712 | 2L | 4830040..4830400 | 516..156 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 4830469..4830607 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:26:54 has no hits.
BO07020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:50 Download gff for
BO07020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:07 Download gff for
BO07020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:29 Download gff for
BO07020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 83..994 | 13..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:43 Download gff for
BO07020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fnta-RA | 83..994 | 13..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:43 Download gff for
BO07020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4829572..4829979 | 517..924 | 99 | <- | Minus |
2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
2L | 4830469..4830609 | 13..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:29 Download gff for
BO07020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4829572..4829979 | 517..924 | 99 | <- | Minus |
arm_2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
arm_2L | 4830469..4830609 | 13..155 | 98 | | Minus |
BO07020.complete Sequence
1027 bp (1027 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630629
> BO07020.complete
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCAACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGT
GTACGGTCTGTGCGAGGACATGGCCACCAAACACGATGTGATTCGTCGCA
AGTACTGGCAGTATGTGGCCAACCATCTGAAGAACCAGCTAAGCACGGTC
GAACAGAAGGCAAGCTTTCTAGACCAT
BO07020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 996 | CG2976-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
Fnta-RA | 996 | CG2976-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 1352 | CG2976-RB | 87..1079 | 17..1009 | 4965 | 100 | Plus |
Fnta-RA | 1185 | CG2976-RA | 87..1079 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4829487..4829984 | 1009..512 | 2475 | 99.8 | Minus |
2L | 23513712 | 2L | 4830040..4830400 | 516..156 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 4830469..4830607 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:58:29 has no hits.
BO07020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:46 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 1..996 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:21 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 60..1060 | 13..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:18 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 87..1079 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:46 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 60..1060 | 13..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:03 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fnta-RA | 87..1079 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:03 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4830469..4830607 | 17..155 | 100 | | Minus |
2L | 4829483..4829979 | 517..1011 | 99 | <- | Minus |
2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:18 Download gff for
BO07020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4829483..4829979 | 517..1011 | 99 | <- | Minus |
arm_2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
arm_2L | 4830469..4830607 | 17..155 | 100 | | Minus |
BO07020.pep Sequence
Translation from 16 to 1027
> BO07020.pep
MGDSSDEEYLGTDWLAYSERSDWEDVQPLAQDDGPNPVVSIAYSQKFREV
FDYMRAIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLY
AELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNELELTENALVNDGDA
KNYHAWQHRQWAIRSFNLYDDELSFVDRLISEDQRNNSAWNQRFFVIKHF
GFTPELIQRELSYTMNRIRIIKNNESAWNYLVGVMRQGDSGNALLSSYPD
VVDFVEELYQAGNRSPYLLAFLIDLYQEQALQLKASDSDQLARKVYGLCE
DMATKHDVIRRKYWQYVANHLKNQLSTVEQKASFLDH
BO07020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-PB | 331 | CG2976-PB | 1..331 | 1..331 | 1745 | 100 | Plus |
Fnta-PA | 331 | CG2976-PA | 1..331 | 1..331 | 1745 | 100 | Plus |