Clone BO07023 Report

Search the DGRC for BO07023

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG4424-RA
Protein status:BO07023.pep: full length peptide match
Sequenced Size:1069

Clone Sequence Records

BO07023.3prime Sequence

855 bp (797 high quality bases) assembled on 2005-12-03

> BO07023.3prime
ATGGTCTAGAAAGCTTGCAGCATTAGCTACAGTAATCCCCACTTTAAAGG
TACTTAGATAGGCAGTCAGTCGTGGATCATTTATATGCTGTTGCGTTTGC
AGATGCGCCACGAGATTGTGAATGCGAGCGAAGCTTTTGTTGCAGAGTTG
GCATATGTGGGGTTTTTCGCCCGTGTGCGTCTTGTAGTGCATTTTAAGGA
CACTGGCATATGTGAACTTCTTTCCGCAGGTCTTGCAGGCATAAGGACGC
TCATTTCGATGGGTTCTTTCATGCTTAACTAGGGAAGTGCGATCCGCGAA
GTTGCGTTGGCAATATTGGCAGGTATATGGTTTAGCTCCCGTGTGCTGCC
GGATGTGGCGCTTCAGCTGGTAGTTGACGTGGAAGCTCTTGTGGCAAATC
TCGCACTCGTAAGGCCGCTCATCGTTATGCCTTCGCATGTGGGTGTCCAG
CGTGCTCTTCCTGGGATATCCATTGCCACAGATAGCGCACACATGCAATT
TACCCTTGACGGCACCAGCAGGAGCAGGTGGAGGAGTAGATGCAGGCGGA
GGATAAGGAGCAGGAAGCATTTCCACCGTTAGAACTGTGGGCCTTTCCTT
TTCCGCCGGGCCATGTGGCGTTTCTTCAATGGGATCTTCCGTAGACCAAA
CTCCCTCTTCAAGCACCTCATCCTCTGGTGGTTCAAGCTGCTCAGTCTCT
ATCGGTGGCGGAGTTGAAGGTCGCGTTTGCTGCACCACCTCCTTGACTAC
CCCTTGCTCGACTGCATCCTTTATCACGTATTCCCGGAGAAATTCATTGG
AGCGCTGGCATATCTGTCGAAATTTGTGGGGCAGAGTTAGAAATGCCTTG
CATCT

BO07023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-PA 1038 CG4424-RA 199..1035 855..19 4160 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1258 CG4424-RA 279..1115 855..19 4170 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20027246..20027701 400..855 2265 99.8 Plus
3R 32079331 3R 20026630..20026765 19..154 680 100 Plus
3R 32079331 3R 20027052..20027186 266..400 675 100 Plus
3R 32079331 3R 20026831..20026943 155..267 565 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:55:21 has no hits.

BO07023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:55 Download gff for BO07023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 199..1038 15..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:13 Download gff for BO07023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 199..1038 15..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:32 Download gff for BO07023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 265..1104 15..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:19 Download gff for BO07023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 279..1118 15..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:19 Download gff for BO07023.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20026627..20026765 15..154 98 <- Plus
3R 20026831..20026941 155..265 100 <- Plus
3R 20027052..20027186 266..400 100 <- Plus
3R 20027247..20027701 401..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:32 Download gff for BO07023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15852349..15852487 15..154 98 <- Plus
arm_3R 15852553..15852663 155..265 100 <- Plus
arm_3R 15852774..15852908 266..400 100 <- Plus
arm_3R 15852969..15853423 401..855 99   Plus

BO07023.5prime Sequence

832 bp (783 high quality bases) assembled on 2005-12-03

> BO07023.5prime
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCAATATTGCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCC

BO07023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-PA 1038 CG4424-RA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1258 CG4424-RA 81..896 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20027246..20027751 670..165 2530 100 Minus
3R 32079331 3R 20027811..20027960 166..17 750 100 Minus
3R 32079331 3R 20027052..20027186 804..670 675 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:27:27 has no hits.

BO07023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:56 Download gff for BO07023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:15 Download gff for BO07023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:33 Download gff for BO07023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 63..882 12..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:35 Download gff for BO07023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 77..896 12..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:35 Download gff for BO07023.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20026914..20026941 805..832 100 <- Minus
3R 20027052..20027186 670..804 100 <- Minus
3R 20027247..20027749 167..669 100 <- Minus
3R 20027811..20027964 12..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:33 Download gff for BO07023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15852636..15852663 805..832 100 <- Minus
arm_3R 15852774..15852908 670..804 100 <- Minus
arm_3R 15852969..15853471 167..669 100 <- Minus
arm_3R 15853533..15853686 12..166 98   Minus

BO07023.complete Sequence

1069 bp (1069 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630630

> BO07023.complete
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCAATATTGCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCCTGCAAGACCTGCGGAAAG
AAGTTCACATATGCCAGTGTCCTTAAAATGCACTACAAGACGCACACGGG
CGAAAAACCCCACATATGCCAACTCTGCAACAAAAGCTTCGCTCGCATTC
ACAATCTCGTGGCGCATCTGCAAACGCAACAGCATATAAATGATCCACGA
CTGACTGCCTATCTAAGTACCTTTAAAGTGGGGATTACTGTAGCTAATGC
TGCAAGCTTTCTAGACCAT

BO07023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1038 CG4424-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-RA 1258 CG4424-RA 81..1115 17..1051 5175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20027246..20027751 670..165 2530 100 Minus
3R 32079331 3R 20027811..20027960 166..17 750 100 Minus
3R 32079331 3R 20026630..20026765 1051..916 680 100 Minus
3R 32079331 3R 20027052..20027186 804..670 675 100 Minus
3R 32079331 3R 20026831..20026943 915..803 565 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:40:10 has no hits.

BO07023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:28 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 1..1038 17..1055 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:01 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 63..1104 12..1055 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:03 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 67..1101 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:29 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 63..1104 12..1055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:55 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
CG4424-RA 81..1115 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:55 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20026628..20026765 916..1053 98 <- Minus
3R 20026831..20026941 805..915 100 <- Minus
3R 20027052..20027186 670..804 100 <- Minus
3R 20027247..20027749 167..669 100 <- Minus
3R 20027811..20027960 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:03 Download gff for BO07023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15852350..15852487 916..1053 98 <- Minus
arm_3R 15852553..15852663 805..915 100 <- Minus
arm_3R 15852774..15852908 670..804 100 <- Minus
arm_3R 15852969..15853471 167..669 100 <- Minus
arm_3R 15853533..15853682 17..166 100   Minus

BO07023.pep Sequence

Translation from 16 to 1069

> BO07023.pep
MEIRLNMMTLCRTCLQDGEAHMVSIFQTADDRLPGGVSLCDKIESLSGIQ
IRATAKEEVLPTRICLRCKAFLTLAHKFRQICQRSNEFLREYVIKDAVEQ
GVVKEVVQQTRPSTPPPIETEQLEPPEDEVLEEGVWSTEDPIEETPHGPA
EKERPTVLTVEMLPAPYPPPASTPPPAPAGAVKGKLHVCAICGNGYPRKS
TLDTHMRRHNDERPYECEICHKSFHVNYQLKRHIRQHTGAKPYTCQYCQR
NFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKTHTGEKPHI
CQLCNKSFARIHNLVAHLQTQQHINDPRLTAYLSTFKVGITVANAASFLD
H

BO07023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4424-PA 345 CG4424-PA 1..345 1..345 1871 100 Plus
CG14711-PA 377 CG14711-PA 6..362 10..323 538 35.7 Plus
CG4854-PA 319 CG4854-PA 12..317 11..326 460 32.7 Plus
trem-PA 439 CG4413-PA 195..405 107..320 426 40.2 Plus
CG14710-PB 415 CG14710-PB 263..400 188..325 414 49.3 Plus
CG14711-PA 377 CG14711-PA 280..373 185..269 166 34 Plus