Clone Sequence Records
BO07023.3prime Sequence
855 bp (797 high quality bases) assembled on 2005-12-03
> BO07023.3prime
ATGGTCTAGAAAGCTTGCAGCATTAGCTACAGTAATCCCCACTTTAAAGG
TACTTAGATAGGCAGTCAGTCGTGGATCATTTATATGCTGTTGCGTTTGC
AGATGCGCCACGAGATTGTGAATGCGAGCGAAGCTTTTGTTGCAGAGTTG
GCATATGTGGGGTTTTTCGCCCGTGTGCGTCTTGTAGTGCATTTTAAGGA
CACTGGCATATGTGAACTTCTTTCCGCAGGTCTTGCAGGCATAAGGACGC
TCATTTCGATGGGTTCTTTCATGCTTAACTAGGGAAGTGCGATCCGCGAA
GTTGCGTTGGCAATATTGGCAGGTATATGGTTTAGCTCCCGTGTGCTGCC
GGATGTGGCGCTTCAGCTGGTAGTTGACGTGGAAGCTCTTGTGGCAAATC
TCGCACTCGTAAGGCCGCTCATCGTTATGCCTTCGCATGTGGGTGTCCAG
CGTGCTCTTCCTGGGATATCCATTGCCACAGATAGCGCACACATGCAATT
TACCCTTGACGGCACCAGCAGGAGCAGGTGGAGGAGTAGATGCAGGCGGA
GGATAAGGAGCAGGAAGCATTTCCACCGTTAGAACTGTGGGCCTTTCCTT
TTCCGCCGGGCCATGTGGCGTTTCTTCAATGGGATCTTCCGTAGACCAAA
CTCCCTCTTCAAGCACCTCATCCTCTGGTGGTTCAAGCTGCTCAGTCTCT
ATCGGTGGCGGAGTTGAAGGTCGCGTTTGCTGCACCACCTCCTTGACTAC
CCCTTGCTCGACTGCATCCTTTATCACGTATTCCCGGAGAAATTCATTGG
AGCGCTGGCATATCTGTCGAAATTTGTGGGGCAGAGTTAGAAATGCCTTG
CATCT
BO07023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-PA | 1038 | CG4424-RA | 199..1035 | 855..19 | 4160 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1258 | CG4424-RA | 279..1115 | 855..19 | 4170 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20027246..20027701 | 400..855 | 2265 | 99.8 | Plus |
3R | 32079331 | 3R | 20026630..20026765 | 19..154 | 680 | 100 | Plus |
3R | 32079331 | 3R | 20027052..20027186 | 266..400 | 675 | 100 | Plus |
3R | 32079331 | 3R | 20026831..20026943 | 155..267 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:55:21 has no hits.
BO07023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:55 Download gff for
BO07023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 199..1038 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:13 Download gff for
BO07023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 199..1038 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:32 Download gff for
BO07023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 265..1104 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:19 Download gff for
BO07023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 279..1118 | 15..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:19 Download gff for
BO07023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20026627..20026765 | 15..154 | 98 | <- | Plus |
3R | 20026831..20026941 | 155..265 | 100 | <- | Plus |
3R | 20027052..20027186 | 266..400 | 100 | <- | Plus |
3R | 20027247..20027701 | 401..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:32 Download gff for
BO07023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15852349..15852487 | 15..154 | 98 | <- | Plus |
arm_3R | 15852553..15852663 | 155..265 | 100 | <- | Plus |
arm_3R | 15852774..15852908 | 266..400 | 100 | <- | Plus |
arm_3R | 15852969..15853423 | 401..855 | 99 | | Plus |
BO07023.5prime Sequence
832 bp (783 high quality bases) assembled on 2005-12-03
> BO07023.5prime
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCAATATTGCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCC
BO07023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-PA | 1038 | CG4424-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1258 | CG4424-RA | 81..896 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20027246..20027751 | 670..165 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 20027811..20027960 | 166..17 | 750 | 100 | Minus |
3R | 32079331 | 3R | 20027052..20027186 | 804..670 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:27:27 has no hits.
BO07023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:56 Download gff for
BO07023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:15 Download gff for
BO07023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:33 Download gff for
BO07023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 63..882 | 12..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:35 Download gff for
BO07023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 77..896 | 12..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:35 Download gff for
BO07023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20026914..20026941 | 805..832 | 100 | <- | Minus |
3R | 20027052..20027186 | 670..804 | 100 | <- | Minus |
3R | 20027247..20027749 | 167..669 | 100 | <- | Minus |
3R | 20027811..20027964 | 12..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:33 Download gff for
BO07023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15852636..15852663 | 805..832 | 100 | <- | Minus |
arm_3R | 15852774..15852908 | 670..804 | 100 | <- | Minus |
arm_3R | 15853533..15853686 | 12..166 | 98 | | Minus |
arm_3R | 15852969..15853471 | 167..669 | 100 | <- | Minus |
BO07023.complete Sequence
1069 bp (1069 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630630
> BO07023.complete
GAAGTTATCAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCA
GGACTTGCCTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACA
GCGGACGATAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAG
TTTGAGTGGAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCA
CCAGAATCTGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTT
CGACAGATATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAA
GGATGCAGTCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGAC
CTTCAACTCCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGAT
GAGGTGCTTGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAAC
GCCACATGGCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAA
TGCTTCCTGCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCT
GCTGGTGCCGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGG
ATATCCCAGGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATG
AGCGGCCTTACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTAC
CAGCTGAAGCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTG
CCAATATTGCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATG
AAAGAACCCATCGAAATGAGCGTCCTTATGCCTGCAAGACCTGCGGAAAG
AAGTTCACATATGCCAGTGTCCTTAAAATGCACTACAAGACGCACACGGG
CGAAAAACCCCACATATGCCAACTCTGCAACAAAAGCTTCGCTCGCATTC
ACAATCTCGTGGCGCATCTGCAAACGCAACAGCATATAAATGATCCACGA
CTGACTGCCTATCTAAGTACCTTTAAAGTGGGGATTACTGTAGCTAATGC
TGCAAGCTTTCTAGACCAT
BO07023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1038 | CG4424-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-RA | 1258 | CG4424-RA | 81..1115 | 17..1051 | 5175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20027246..20027751 | 670..165 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 20027811..20027960 | 166..17 | 750 | 100 | Minus |
3R | 32079331 | 3R | 20026630..20026765 | 1051..916 | 680 | 100 | Minus |
3R | 32079331 | 3R | 20027052..20027186 | 804..670 | 675 | 100 | Minus |
3R | 32079331 | 3R | 20026831..20026943 | 915..803 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:10 has no hits.
BO07023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:28 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 1..1038 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:01 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 63..1104 | 12..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:03 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 67..1101 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:29 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 63..1104 | 12..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:55 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4424-RA | 81..1115 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:55 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20026628..20026765 | 916..1053 | 98 | <- | Minus |
3R | 20026831..20026941 | 805..915 | 100 | <- | Minus |
3R | 20027052..20027186 | 670..804 | 100 | <- | Minus |
3R | 20027247..20027749 | 167..669 | 100 | <- | Minus |
3R | 20027811..20027960 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:03 Download gff for
BO07023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15852350..15852487 | 916..1053 | 98 | <- | Minus |
arm_3R | 15852553..15852663 | 805..915 | 100 | <- | Minus |
arm_3R | 15852774..15852908 | 670..804 | 100 | <- | Minus |
arm_3R | 15852969..15853471 | 167..669 | 100 | <- | Minus |
arm_3R | 15853533..15853682 | 17..166 | 100 | | Minus |
BO07023.pep Sequence
Translation from 16 to 1069
> BO07023.pep
MEIRLNMMTLCRTCLQDGEAHMVSIFQTADDRLPGGVSLCDKIESLSGIQ
IRATAKEEVLPTRICLRCKAFLTLAHKFRQICQRSNEFLREYVIKDAVEQ
GVVKEVVQQTRPSTPPPIETEQLEPPEDEVLEEGVWSTEDPIEETPHGPA
EKERPTVLTVEMLPAPYPPPASTPPPAPAGAVKGKLHVCAICGNGYPRKS
TLDTHMRRHNDERPYECEICHKSFHVNYQLKRHIRQHTGAKPYTCQYCQR
NFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKTHTGEKPHI
CQLCNKSFARIHNLVAHLQTQQHINDPRLTAYLSTFKVGITVANAASFLD
H
BO07023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4424-PA | 345 | CG4424-PA | 1..345 | 1..345 | 1871 | 100 | Plus |
CG14711-PA | 377 | CG14711-PA | 6..362 | 10..323 | 538 | 35.7 | Plus |
CG4854-PA | 319 | CG4854-PA | 12..317 | 11..326 | 460 | 32.7 | Plus |
trem-PA | 439 | CG4413-PA | 195..405 | 107..320 | 426 | 40.2 | Plus |
CG14710-PB | 415 | CG14710-PB | 263..400 | 188..325 | 414 | 49.3 | Plus |
CG14711-PA | 377 | CG14711-PA | 280..373 | 185..269 | 166 | 34 | Plus |