Clone Sequence Records
BO07024.5prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-03
> BO07024.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGA
GGGGCCACAGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACT
TCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAG
AAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGA
AATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCG
AAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCC
TCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGA
CGAAGACAGCGACAATGAGACGCACGCAAGCTTTCTAGACC
BO07024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PA | 762 | Prosalpha7-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG1519-PB | 708 | Prosalpha7-RB | 1..421 | 17..437 | 2105 | 100 | Plus |
CG1519-PB | 708 | Prosalpha7-RB | 416..705 | 486..775 | 1450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..878 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847073..9847638 | 603..38 | 2830 | 100 | Minus |
2R | 25286936 | 2R | 9846734..9846905 | 775..604 | 860 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 00:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 526..575 | 136 | 80 | Plus |
BO07024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:59 Download gff for
BO07024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:18 Download gff for
BO07024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:28 Download gff for
BO07024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..883 | 8..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:48 Download gff for
BO07024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..883 | 8..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:48 Download gff for
BO07024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9847073..9847638 | 38..603 | 100 | <- | Minus |
2R | 9846729..9846905 | 604..783 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:28 Download gff for
BO07024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734234..5734410 | 604..783 | 97 | <- | Minus |
arm_2R | 5734578..5735143 | 38..603 | 100 | <- | Minus |
BO07024.3prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-03
> BO07024.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCTCATTGTCGCTGTCTTCGTCCTTGT
TGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATTT
ATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGCG
GAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCAG
CGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCATC
TCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAACC
GAAGGAGGAGCCGGACGGCTCGATCTTGTAGAGCTGTGGCCCCTCTACTT
CGTCCCAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACTG
TACAGAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTTT
AAGCGGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGAC
GCGCAATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGCC
ATTCCGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTTC
GTACAGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCCT
TGCCCCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGCG
TAGTCGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACAA
GTCGTATCCAGTGCCAATAGTACTCATGTCGACTGATAACT
BO07024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PA | 762 | Prosalpha7-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
CG1519-PB | 708 | Prosalpha7-RB | 1..421 | 777..357 | 2105 | 100 | Minus |
CG1519-PB | 708 | Prosalpha7-RB | 416..705 | 308..19 | 1450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..878 | 777..19 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847073..9847638 | 191..756 | 2830 | 100 | Plus |
2R | 25286936 | 2R | 9846734..9846905 | 19..190 | 860 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 268..219 | 136 | 80 | Minus |
BO07024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:06:57 Download gff for
BO07024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 18..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:16 Download gff for
BO07024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 18..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:43 Download gff for
BO07024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..883 | 11..786 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:31 Download gff for
BO07024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..883 | 11..786 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:31 Download gff for
BO07024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846729..9846905 | 11..190 | 97 | <- | Plus |
2R | 9847073..9847638 | 191..756 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:43 Download gff for
BO07024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734234..5734410 | 11..190 | 97 | <- | Plus |
arm_2R | 5734578..5735143 | 191..756 | 100 | <- | Plus |
BO07024.complete Sequence
793 bp (793 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630631
> BO07024.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGA
GGGGCCACAGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACT
TCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAG
AAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGA
AATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCG
AAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCC
TCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGA
CGAAGACAGCGACAATGAGACGCACGCAAGCTTTCTAGACCAT
BO07024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 762 | CG1519-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..878 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847073..9847638 | 603..38 | 2830 | 100 | Minus |
2R | 25286936 | 2R | 9846734..9846905 | 775..604 | 860 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 526..575 | 136 | 80 | Plus |
BO07024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:41 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:30 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 110..881 | 8..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:10 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 120..878 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:41 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 110..881 | 8..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:36 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 120..878 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:36 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846732..9846905 | 604..777 | 98 | <- | Minus |
2R | 9847073..9847638 | 38..603 | 100 | <- | Minus |
2R | 9847697..9847717 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:10 Download gff for
BO07024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734237..5734410 | 604..777 | 98 | <- | Minus |
arm_2R | 5734578..5735143 | 38..603 | 100 | <- | Minus |
arm_2R | 5735202..5735222 | 17..37 | 100 | | Minus |
BO07024.pep Sequence
Translation from 16 to 793
> BO07024.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLY
KIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKV
HDELKDKDFRFEMGLVGRVTGGLHLINPSELTEKARKAGDAANKDEDSDN
ETHASFLDH
BO07024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-PA | 253 | CG1519-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
Prosalpha1-PB | 244 | CG18495-PB | 8..242 | 7..240 | 317 | 30.5 | Plus |
Prosalpha1-PA | 244 | CG18495-PA | 8..242 | 7..240 | 317 | 30.5 | Plus |
CG30382-PB | 244 | CG30382-PB | 8..242 | 7..240 | 317 | 30.5 | Plus |
CG30382-PA | 244 | CG30382-PA | 8..242 | 7..240 | 317 | 30.5 | Plus |